LmxM.25.0190 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.25.0190OTHER0.9989200.0002620.000817
No Results

  • Fasta :-

    >LmxM.25.0190 MWFPLESNPQVMNRYISTLGLTDAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATE KRLAEQQAAQTEEVAALRKVHPFFFTHQLVSNACGTIAIAHALMNNRDKLGEIAAGSILD GPWVKAAEMSQDPKIIGKLIAEDTSLASAHAAAAQEGTTANQHIDADINLHFVCFIPVGG RCVELDGRKANPTLHGHCTDNKSFLTAAAAAIQKRIELNPNSYEFGITALVNK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/789 Sequence name : 789 Sequence length : 233 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.844 ChDiff : -8 ZoneTo : 22 KR : 1 DE : 1 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.176 1.300 0.052 0.551 MesoH : -0.540 0.346 -0.407 0.230 MuHd_075 : 21.669 17.222 5.243 5.590 MuHd_095 : 26.373 17.887 7.345 6.593 MuHd_100 : 24.006 16.366 6.164 6.145 MuHd_105 : 20.703 15.039 4.843 6.427 Hmax_075 : 15.900 14.933 2.582 4.790 Hmax_095 : 6.913 8.000 -0.374 3.780 Hmax_100 : 8.100 8.000 -0.472 4.060 Hmax_105 : 7.438 12.950 1.769 4.069 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7904 0.2096 DFMC : 0.8632 0.1368
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 233 LmxM.25.0190 MWFPLESNPQVMNRYISTLGLTDAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATEKRLAEQQAAQTEEVAALRKV 80 HPFFFTHQLVSNACGTIAIAHALMNNRDKLGEIAAGSILDGPWVKAAEMSQDPKIIGKLIAEDTSLASAHAAAAQEGTTA 160 NQHIDADINLHFVCFIPVGGRCVELDGRKANPTLHGHCTDNKSFLTAAAAAIQKRIELNPNSYEFGITALVNK 240 ................................................................................ 80 ................................................................................ 160 ......................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.25.0190 14 NPQVMNR|YI 0.187 . LmxM.25.0190 25 LGLTDAK|VQ 0.057 . LmxM.25.0190 61 MCEATEK|RL 0.062 . LmxM.25.0190 62 CEATEKR|LA 0.362 . LmxM.25.0190 78 EEVAALR|KV 0.118 . LmxM.25.0190 79 EVAALRK|VH 0.063 . LmxM.25.0190 107 HALMNNR|DK 0.092 . LmxM.25.0190 109 LMNNRDK|LG 0.072 . LmxM.25.0190 125 LDGPWVK|AA 0.078 . LmxM.25.0190 134 EMSQDPK|II 0.082 . LmxM.25.0190 138 DPKIIGK|LI 0.061 . LmxM.25.0190 181 FIPVGGR|CV 0.089 . LmxM.25.0190 188 CVELDGR|KA 0.090 . LmxM.25.0190 189 VELDGRK|AN 0.064 . LmxM.25.0190 202 GHCTDNK|SF 0.073 . LmxM.25.0190 214 AAAAIQK|RI 0.063 . LmxM.25.0190 215 AAAIQKR|IE 0.125 . LmxM.25.0190 233 ITALVNK|-- 0.068 . ____________________________^_________________

  • Fasta :-

    >LmxM.25.0190 ATGTGGTTCCCGCTGGAGAGCAATCCGCAGGTGATGAACCGCTACATAAGCACCTTGGGT CTCACAGATGCCAAGGTGCAGTTTGTGGATGTGTACGGTGTGTCGGACGATCTACTTGAA ATGGTGCCTTCCCCGGTGCACGCCGTGCTCCTCGTGTACCCAATGTGCGAGGCCACGGAG AAACGCCTAGCTGAGCAGCAGGCTGCGCAGACAGAGGAAGTTGCTGCACTTCGAAAAGTG CACCCTTTCTTCTTTACACACCAGCTCGTTTCGAACGCGTGCGGAACTATTGCCATCGCG CATGCTCTCATGAACAACCGCGATAAGCTCGGTGAGATCGCCGCCGGCAGTATCCTCGAC GGCCCATGGGTGAAGGCGGCAGAGATGTCGCAAGATCCCAAGATCATCGGGAAACTTATT GCCGAAGACACGAGTCTCGCCAGCGCTCACGCCGCTGCTGCGCAGGAGGGCACGACCGCC AACCAGCATATCGACGCGGACATCAACCTTCACTTTGTCTGCTTCATCCCCGTGGGCGGA CGCTGCGTCGAGCTGGATGGGCGCAAAGCCAACCCAACCTTGCACGGTCACTGCACCGAC AACAAGTCTTTCCTCACGGCGGCAGCCGCTGCTATACAGAAACGCATCGAGCTCAACCCG AACTCCTACGAGTTCGGCATCACCGCACTCGTGAACAAGTGA
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  • Fasta :-

    MWFPLESNPQVMNRYISTLGLTDAKVQFVDVYGVSDDLLEMVPSPVHAVLLVYPMCEATE KRLAEQQAAQTEEVAALRKVHPFFFTHQLVSNACGTIAIAHALMNNRDKLGEIAAGSILD GPWVKAAEMSQDPKIIGKLIAEDTSLASAHAAAAQEGTTANQHIDADINLHFVCFIPVGG RCVELDGRKANPTLHGHCTDNKSFLTAAAAAIQKRIELNPNSYEFGITALVNK

  • title: catalytic site
  • coordinates: Q88,C94,H171,D186
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India