LmxM.25.2320 | Microsomal signal peptidase 12 kDa subunit (SPC12), putative

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  • Fasta :-

    >LmxM.25.2320 MEVAATPKAHPVAPPLRKVHPAARWVAGLLSPMSLRDQGYCTDMFQCILWGSLAVSFPIA YWMGCVLVTVIGVCAATLVCLVLFVPNWYQHPDPALKYADDMEVYGYYQQYEAAKKAARE ASAPSKKAAAASPDLPKAMPHVTTA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/400 Sequence name : 400 Sequence length : 145 VALUES OF COMPUTED PARAMETERS Coef20 : 3.394 CoefTot : -0.601 ChDiff : 2 ZoneTo : 36 KR : 5 DE : 1 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.282 2.818 0.729 0.810 MesoH : 0.863 1.181 0.080 0.466 MuHd_075 : 24.153 14.944 5.085 3.956 MuHd_095 : 31.926 25.275 9.084 7.125 MuHd_100 : 36.605 31.314 11.244 9.211 MuHd_105 : 41.078 34.459 11.860 10.431 Hmax_075 : 3.733 9.700 -0.601 2.110 Hmax_095 : 16.400 18.900 2.972 5.490 Hmax_100 : 17.400 21.500 2.869 6.280 Hmax_105 : 13.600 18.400 2.869 5.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9078 0.0922 DFMC : 0.9350 0.0650
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 145 LmxM.25.2320 MEVAATPKAHPVAPPLRKVHPAARWVAGLLSPMSLRDQGYCTDMFQCILWGSLAVSFPIAYWMGCVLVTVIGVCAATLVC 80 LVLFVPNWYQHPDPALKYADDMEVYGYYQQYEAAKKAAREASAPSKKAAAASPDLPKAMPHVTTA 160 ................................................................................ 80 ................................................................. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.25.2320 8 EVAATPK|AH 0.062 . LmxM.25.2320 17 PVAPPLR|KV 0.143 . LmxM.25.2320 18 VAPPLRK|VH 0.072 . LmxM.25.2320 24 KVHPAAR|WV 0.155 . LmxM.25.2320 36 LSPMSLR|DQ 0.132 . LmxM.25.2320 97 HPDPALK|YA 0.087 . LmxM.25.2320 115 QQYEAAK|KA 0.068 . LmxM.25.2320 116 QYEAAKK|AA 0.091 . LmxM.25.2320 119 AAKKAAR|EA 0.110 . LmxM.25.2320 126 EASAPSK|KA 0.082 . LmxM.25.2320 127 ASAPSKK|AA 0.171 . LmxM.25.2320 137 ASPDLPK|AM 0.064 . ____________________________^_________________

  • Fasta :-

    >LmxM.25.2320 ATGGAGGTCGCCGCCACGCCCAAAGCGCATCCCGTTGCGCCGCCGCTGCGCAAGGTGCAC CCCGCCGCACGCTGGGTAGCTGGTCTCCTCTCACCCATGTCGCTTCGGGATCAGGGGTAC TGCACAGACATGTTCCAGTGCATTCTGTGGGGATCACTGGCCGTCTCCTTTCCAATCGCC TACTGGATGGGCTGCGTGCTCGTCACTGTCATCGGTGTGTGTGCGGCGACGCTGGTGTGC CTCGTGCTCTTTGTCCCGAACTGGTATCAGCACCCGGACCCAGCTCTCAAGTACGCGGAT GACATGGAGGTGTACGGCTACTACCAGCAGTACGAGGCGGCAAAGAAGGCGGCACGTGAA GCGTCAGCGCCGTCCAAGAAGGCGGCCGCCGCTTCTCCAGACTTGCCAAAGGCCATGCCG CATGTTACGACTGCATGA
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  • Fasta :-

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IDSitePeptideScoreMethod
LmxM.25.232034 SLSPMSLRDQ0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India