LmxM.26.1570 | thimet oligopeptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.26.1570OTHER0.9914720.0024350.006093
No Results

  • Fasta :-

    >LmxM.26.1570 MAATSIFADISTVGKCAALFPKTVAACEDLVKAAKHRAEQSLGKIYGIAPPNRTFQNTAK SIDMASIELEVSASLLSVIASVSPSKEVRDEATNRVVELETFSIDNFESNRQLYSALKEV CATPAYEAVYASGKAPREYTYWMEEQLADYRRKGMELPEEEFQKVVQLQKELASLCTVFQ QNISEDKTEVHFTVDALKGVPESVLSALQRTEAGECTVKMDYPTYFAVMKNCEVASTRQA VAQAFTNRAYPVNDNVLKDIIEKRHQLAVLLGYPSFAHLYISDKMAKKPEMAQAFVENLI PKVQKKWATEAELLKKHLHPSCSLSPAGEIQAYDIPFMINQIKKTLLNVSETEIQEYFPM DATVKALFDIYQSFFDITFLQVDNGSELWHSEVKTLEVKDKKSGCMLGYIILDLFPREGK YSHACCHSVVPPVLLKEDGNDFSPALAVVIANFPGATADRPALFLHDDVETFFHEFGHAI HSLMGRTRMATFAGTRVKRDFVELPSQMLEEWLWEPEILQTITSHYKTKEPLPRALIDAK VASKNAFSGRDTLRQLQFATYSLQIFGLPFSTQPRDSLNTTQLFYDLEPRVMPGVQYEHN THFESAFGHLTGYGAGYYGYMWSKVFALDLFEYIRSHNGLLDPKMGCRYVDCIIGVGGSQ DPNDMLVKFLGREPNNEAFLRSIGV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/103 Sequence name : 103 Sequence length : 685 VALUES OF COMPUTED PARAMETERS Coef20 : 4.626 CoefTot : 0.366 ChDiff : -17 ZoneTo : 27 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.524 0.135 0.583 MesoH : -0.454 0.366 -0.342 0.250 MuHd_075 : 18.979 12.234 5.252 3.479 MuHd_095 : 20.296 14.650 7.531 5.148 MuHd_100 : 25.490 20.128 9.797 6.292 MuHd_105 : 30.047 21.891 10.278 7.573 Hmax_075 : 15.050 13.500 3.536 4.730 Hmax_095 : 15.700 17.700 5.665 6.090 Hmax_100 : 17.600 22.500 6.719 6.020 Hmax_105 : 18.500 24.033 5.915 7.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9132 0.0868 DFMC : 0.8549 0.1451
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 685 LmxM.26.1570 MAATSIFADISTVGKCAALFPKTVAACEDLVKAAKHRAEQSLGKIYGIAPPNRTFQNTAKSIDMASIELEVSASLLSVIA 80 SVSPSKEVRDEATNRVVELETFSIDNFESNRQLYSALKEVCATPAYEAVYASGKAPREYTYWMEEQLADYRRKGMELPEE 160 EFQKVVQLQKELASLCTVFQQNISEDKTEVHFTVDALKGVPESVLSALQRTEAGECTVKMDYPTYFAVMKNCEVASTRQA 240 VAQAFTNRAYPVNDNVLKDIIEKRHQLAVLLGYPSFAHLYISDKMAKKPEMAQAFVENLIPKVQKKWATEAELLKKHLHP 320 SCSLSPAGEIQAYDIPFMINQIKKTLLNVSETEIQEYFPMDATVKALFDIYQSFFDITFLQVDNGSELWHSEVKTLEVKD 400 KKSGCMLGYIILDLFPREGKYSHACCHSVVPPVLLKEDGNDFSPALAVVIANFPGATADRPALFLHDDVETFFHEFGHAI 480 HSLMGRTRMATFAGTRVKRDFVELPSQMLEEWLWEPEILQTITSHYKTKEPLPRALIDAKVASKNAFSGRDTLRQLQFAT 560 YSLQIFGLPFSTQPRDSLNTTQLFYDLEPRVMPGVQYEHNTHFESAFGHLTGYGAGYYGYMWSKVFALDLFEYIRSHNGL 640 LDPKMGCRYVDCIIGVGGSQDPNDMLVKFLGREPNNEAFLRSIGV 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..................P............................................................. 560 ................................................................................ 640 ............................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.26.1570 15 DISTVGK|CA 0.072 . LmxM.26.1570 22 CAALFPK|TV 0.096 . LmxM.26.1570 32 ACEDLVK|AA 0.063 . LmxM.26.1570 35 DLVKAAK|HR 0.061 . LmxM.26.1570 37 VKAAKHR|AE 0.099 . LmxM.26.1570 44 AEQSLGK|IY 0.076 . LmxM.26.1570 53 GIAPPNR|TF 0.088 . LmxM.26.1570 60 TFQNTAK|SI 0.105 . LmxM.26.1570 86 ASVSPSK|EV 0.075 . LmxM.26.1570 89 SPSKEVR|DE 0.168 . LmxM.26.1570 95 RDEATNR|VV 0.126 . LmxM.26.1570 111 DNFESNR|QL 0.094 . LmxM.26.1570 118 QLYSALK|EV 0.069 . LmxM.26.1570 134 AVYASGK|AP 0.063 . LmxM.26.1570 137 ASGKAPR|EY 0.103 . LmxM.26.1570 151 EQLADYR|RK 0.083 . LmxM.26.1570 152 QLADYRR|KG 0.119 . LmxM.26.1570 153 LADYRRK|GM 0.094 . LmxM.26.1570 164 PEEEFQK|VV 0.068 . LmxM.26.1570 170 KVVQLQK|EL 0.056 . LmxM.26.1570 187 QNISEDK|TE 0.055 . LmxM.26.1570 198 FTVDALK|GV 0.070 . LmxM.26.1570 210 VLSALQR|TE 0.093 . LmxM.26.1570 219 AGECTVK|MD 0.058 . LmxM.26.1570 230 TYFAVMK|NC 0.067 . LmxM.26.1570 238 CEVASTR|QA 0.113 . LmxM.26.1570 248 AQAFTNR|AY 0.090 . LmxM.26.1570 258 VNDNVLK|DI 0.090 . LmxM.26.1570 263 LKDIIEK|RH 0.055 . LmxM.26.1570 264 KDIIEKR|HQ 0.190 . LmxM.26.1570 284 HLYISDK|MA 0.076 . LmxM.26.1570 287 ISDKMAK|KP 0.068 . LmxM.26.1570 288 SDKMAKK|PE 0.099 . LmxM.26.1570 302 VENLIPK|VQ 0.059 . LmxM.26.1570 305 LIPKVQK|KW 0.067 . LmxM.26.1570 306 IPKVQKK|WA 0.222 . LmxM.26.1570 315 TEAELLK|KH 0.053 . LmxM.26.1570 316 EAELLKK|HL 0.096 . LmxM.26.1570 343 FMINQIK|KT 0.059 . LmxM.26.1570 344 MINQIKK|TL 0.109 . LmxM.26.1570 365 PMDATVK|AL 0.069 . LmxM.26.1570 394 LWHSEVK|TL 0.069 . LmxM.26.1570 399 VKTLEVK|DK 0.060 . LmxM.26.1570 401 TLEVKDK|KS 0.098 . LmxM.26.1570 402 LEVKDKK|SG 0.116 . LmxM.26.1570 417 ILDLFPR|EG 0.073 . LmxM.26.1570 420 LFPREGK|YS 0.142 . LmxM.26.1570 436 VPPVLLK|ED 0.059 . LmxM.26.1570 460 PGATADR|PA 0.081 . LmxM.26.1570 486 IHSLMGR|TR 0.104 . LmxM.26.1570 488 SLMGRTR|MA 0.134 . LmxM.26.1570 496 ATFAGTR|VK 0.069 . LmxM.26.1570 498 FAGTRVK|RD 0.067 . LmxM.26.1570 499 AGTRVKR|DF 0.578 *ProP* LmxM.26.1570 527 TITSHYK|TK 0.065 . LmxM.26.1570 529 TSHYKTK|EP 0.066 . LmxM.26.1570 534 TKEPLPR|AL 0.134 . LmxM.26.1570 540 RALIDAK|VA 0.073 . LmxM.26.1570 544 DAKVASK|NA 0.074 . LmxM.26.1570 550 KNAFSGR|DT 0.191 . LmxM.26.1570 554 SGRDTLR|QL 0.099 . LmxM.26.1570 575 PFSTQPR|DS 0.106 . LmxM.26.1570 590 FYDLEPR|VM 0.069 . LmxM.26.1570 624 YGYMWSK|VF 0.057 . LmxM.26.1570 635 DLFEYIR|SH 0.098 . LmxM.26.1570 644 NGLLDPK|MG 0.058 . LmxM.26.1570 648 DPKMGCR|YV 0.155 . LmxM.26.1570 668 PNDMLVK|FL 0.077 . LmxM.26.1570 672 LVKFLGR|EP 0.069 . LmxM.26.1570 681 NNEAFLR|SI 0.203 . ____________________________^_________________

  • Fasta :-

    >LmxM.26.1570 ATGGCCGCCACTTCAATCTTTGCAGATATCTCCACAGTCGGAAAATGCGCCGCACTGTTT CCCAAGACGGTTGCCGCATGCGAGGACCTGGTTAAGGCAGCGAAGCATCGCGCAGAGCAG TCGCTGGGGAAGATCTACGGCATCGCTCCTCCCAACCGCACCTTCCAAAACACCGCCAAG TCCATTGATATGGCGTCAATTGAACTGGAGGTGTCGGCCAGTCTGCTGTCCGTCATCGCA AGCGTGTCTCCGAGCAAGGAGGTGCGTGACGAGGCAACCAACCGCGTCGTAGAGCTCGAG ACTTTTTCTATCGACAATTTCGAGTCGAACCGCCAGCTGTACTCTGCGCTGAAGGAGGTG TGTGCCACGCCGGCGTATGAGGCCGTGTACGCGAGCGGGAAGGCACCGCGTGAATACACG TACTGGATGGAGGAGCAGCTTGCTGATTACCGCCGCAAGGGTATGGAGCTGCCAGAGGAA GAGTTCCAGAAGGTCGTGCAGCTGCAAAAGGAGCTCGCGTCGCTGTGCACTGTGTTTCAG CAGAACATCAGCGAAGACAAGACCGAGGTGCATTTCACGGTGGATGCGCTGAAGGGCGTG CCGGAGAGTGTGCTGTCGGCACTGCAGCGCACGGAGGCTGGTGAGTGCACGGTGAAGATG GACTACCCGACCTACTTCGCCGTAATGAAGAACTGCGAGGTGGCGTCAACGCGTCAGGCG GTGGCGCAAGCCTTCACAAATCGCGCGTACCCCGTGAACGACAATGTGCTGAAGGACATC ATCGAAAAGCGCCATCAGCTGGCAGTCCTCCTCGGCTACCCATCCTTCGCCCATCTGTAC ATCTCGGACAAGATGGCGAAGAAGCCGGAGATGGCGCAGGCGTTTGTGGAAAACCTGATC CCGAAGGTGCAGAAGAAGTGGGCGACGGAGGCGGAGCTGCTCAAGAAGCACCTGCACCCC AGCTGCTCGCTGTCGCCTGCAGGGGAAATCCAGGCTTACGACATCCCTTTCATGATCAAC CAGATCAAGAAGACGCTGCTGAATGTGAGCGAGACAGAGATCCAGGAGTACTTCCCGATG GACGCGACAGTGAAAGCGCTCTTCGACATCTACCAGTCCTTCTTTGATATCACGTTCCTG CAGGTCGACAACGGGTCGGAGCTGTGGCACAGCGAAGTAAAGACCCTGGAGGTCAAGGAC AAGAAGAGCGGCTGTATGCTGGGCTATATCATCCTTGATCTATTCCCTCGTGAAGGCAAG TACTCGCACGCGTGCTGCCACTCTGTGGTGCCGCCCGTGCTTCTCAAGGAAGATGGAAAC GACTTCTCCCCGGCACTGGCCGTTGTCATTGCGAATTTCCCAGGAGCCACAGCCGACCGG CCGGCGCTGTTCCTCCACGACGACGTCGAAACCTTCTTCCACGAGTTTGGCCACGCTATT CACTCTCTGATGGGGAGGACGCGTATGGCGACCTTTGCAGGCACGCGTGTGAAGCGTGAC TTCGTAGAGCTGCCGTCCCAAATGCTTGAGGAGTGGCTGTGGGAACCGGAAATTCTGCAG ACGATCACGAGCCATTACAAGACGAAGGAGCCGCTGCCACGCGCGTTGATCGACGCCAAG GTGGCATCGAAGAACGCCTTCAGTGGACGCGACACGCTTCGCCAGCTGCAGTTCGCGACA TATTCGCTTCAGATTTTCGGACTGCCATTCTCGACACAGCCGCGCGACAGCCTCAACACT ACGCAGCTCTTCTACGATTTGGAGCCGCGCGTGATGCCTGGTGTGCAGTACGAGCACAAC ACGCACTTTGAGAGCGCATTCGGGCACTTGACGGGCTACGGTGCCGGCTACTACGGGTAC ATGTGGTCCAAGGTGTTTGCCTTGGACTTGTTCGAGTACATCCGCTCGCACAACGGTCTC CTCGACCCAAAGATGGGCTGCCGCTACGTGGACTGCATCATCGGTGTCGGCGGCAGCCAG GACCCGAACGACATGCTTGTCAAGTTCCTCGGGCGCGAGCCGAACAATGAGGCATTCCTG CGCAGCATTGGTGTGTAG
  • Download Fasta

  • Fasta :-

    MAATSIFADISTVGKCAALFPKTVAACEDLVKAAKHRAEQSLGKIYGIAPPNRTFQNTAK SIDMASIELEVSASLLSVIASVSPSKEVRDEATNRVVELETFSIDNFESNRQLYSALKEV CATPAYEAVYASGKAPREYTYWMEEQLADYRRKGMELPEEEFQKVVQLQKELASLCTVFQ QNISEDKTEVHFTVDALKGVPESVLSALQRTEAGECTVKMDYPTYFAVMKNCEVASTRQA VAQAFTNRAYPVNDNVLKDIIEKRHQLAVLLGYPSFAHLYISDKMAKKPEMAQAFVENLI PKVQKKWATEAELLKKHLHPSCSLSPAGEIQAYDIPFMINQIKKTLLNVSETEIQEYFPM DATVKALFDIYQSFFDITFLQVDNGSELWHSEVKTLEVKDKKSGCMLGYIILDLFPREGK YSHACCHSVVPPVLLKEDGNDFSPALAVVIANFPGATADRPALFLHDDVETFFHEFGHAI HSLMGRTRMATFAGTRVKRDFVELPSQMLEEWLWEPEILQTITSHYKTKEPLPRALIDAK VASKNAFSGRDTLRQLQFATYSLQIFGLPFSTQPRDSLNTTQLFYDLEPRVMPGVQYEHN THFESAFGHLTGYGAGYYGYMWSKVFALDLFEYIRSHNGLLDPKMGCRYVDCIIGVGGSQ DPNDMLVKFLGREPNNEAFLRSIGV

  • title: Zn binding site
  • coordinates: H474,H478,E503
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.26.1570548 SKNAFSGRDT0.997unspLmxM.26.1570552 TSGRDTLRQL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India