LmxM.27.0460 | Vasohibin, putative

  • Computed_GO_Component_IDs:  GO:0005737      

  • Computed_GO_Components:  cytoplasm      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:  GO:0045765      

  • Computed_GO_Processes:  regulation of angiogenesis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >LmxM.27.0460 MSDKVLAIMEELSQQNPFHNQEDLPDPPRPSETAIPRDRPSVEQVPFIQKQISILSYNHL PRTFFSLEKHRSLQSILFTAKEVLYEALPIRCLEATFVALHYTQTLRDIDRIPLSFKSEA NGNFYRHIVLVLRTRSTPALYGALGLSRKPTLMYKPLAYHSLFDVVMDYKHEYEALGHEL LDIKLGIAITHDEHSRWDPCWRFIAIKLDHYRVGAKERTLKHSSTEHHKPTSPGTPQTHA CKTSDRVANDSFSSSNGGHTALPPLSPGPPRVETSIHCVNGDASLVRSAKALGASHSETV AHAYSERFPPLSTCGSTLSPPKPVSSASPSLPHPLSTTDATVETYAPLAQLLSNYMRLLP TISEQYYKGIATVDNNNRALKLCFMDLDTAERDSGAENQRRLQLIGEMQSPLSAEAKRVA ANRKLKPPKRDRGAAKNASGSGSGGGRHRQMSSSGAVGRGKANKRTSLALPLSVGAAVGK RTVPSAAVQPHRSPKMHPSLVVPDLSYPSASLDTPPSAVSERAASLSAPLTGNSHISRPC VSFERIVVDAQNTGSLASPLCSGDGGTEGYMSPCDAGPDSCSEDAFAAPPLTPRNYDARK PLSQYEPSLRSTSSASDLFSTPFSLKATAMCSPRR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/812 Sequence name : 812 Sequence length : 635 VALUES OF COMPUTED PARAMETERS Coef20 : 3.340 CoefTot : 0.112 ChDiff : 12 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.547 1.171 -0.049 0.401 MesoH : -0.167 0.243 -0.268 0.155 MuHd_075 : 8.880 5.720 3.577 2.238 MuHd_095 : 29.443 15.074 7.202 3.902 MuHd_100 : 27.961 16.731 7.273 3.957 MuHd_105 : 27.557 18.643 7.334 4.689 Hmax_075 : 2.625 7.000 -0.585 3.360 Hmax_095 : 9.537 9.100 0.025 3.535 Hmax_100 : 11.100 12.000 0.480 3.920 Hmax_105 : 11.800 12.000 0.654 3.850 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9774 0.0226 DFMC : 0.9787 0.0213
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 635 LmxM.27.0460 MSDKVLAIMEELSQQNPFHNQEDLPDPPRPSETAIPRDRPSVEQVPFIQKQISILSYNHLPRTFFSLEKHRSLQSILFTA 80 KEVLYEALPIRCLEATFVALHYTQTLRDIDRIPLSFKSEANGNFYRHIVLVLRTRSTPALYGALGLSRKPTLMYKPLAYH 160 SLFDVVMDYKHEYEALGHELLDIKLGIAITHDEHSRWDPCWRFIAIKLDHYRVGAKERTLKHSSTEHHKPTSPGTPQTHA 240 CKTSDRVANDSFSSSNGGHTALPPLSPGPPRVETSIHCVNGDASLVRSAKALGASHSETVAHAYSERFPPLSTCGSTLSP 320 PKPVSSASPSLPHPLSTTDATVETYAPLAQLLSNYMRLLPTISEQYYKGIATVDNNNRALKLCFMDLDTAERDSGAENQR 400 RLQLIGEMQSPLSAEAKRVAANRKLKPPKRDRGAAKNASGSGSGGGRHRQMSSSGAVGRGKANKRTSLALPLSVGAAVGK 480 RTVPSAAVQPHRSPKMHPSLVVPDLSYPSASLDTPPSAVSERAASLSAPLTGNSHISRPCVSFERIVVDAQNTGSLASPL 560 CSGDGGTEGYMSPCDAGPDSCSEDAFAAPPLTPRNYDARKPLSQYEPSLRSTSSASDLFSTPFSLKATAMCSPRR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.27.0460 4 ---MSDK|VL 0.065 . LmxM.27.0460 29 DLPDPPR|PS 0.092 . LmxM.27.0460 37 SETAIPR|DR 0.100 . LmxM.27.0460 39 TAIPRDR|PS 0.093 . LmxM.27.0460 50 QVPFIQK|QI 0.059 . LmxM.27.0460 62 SYNHLPR|TF 0.116 . LmxM.27.0460 69 TFFSLEK|HR 0.057 . LmxM.27.0460 71 FSLEKHR|SL 0.154 . LmxM.27.0460 81 SILFTAK|EV 0.065 . LmxM.27.0460 91 YEALPIR|CL 0.106 . LmxM.27.0460 107 HYTQTLR|DI 0.111 . LmxM.27.0460 111 TLRDIDR|IP 0.073 . LmxM.27.0460 117 RIPLSFK|SE 0.072 . LmxM.27.0460 126 ANGNFYR|HI 0.116 . LmxM.27.0460 133 HIVLVLR|TR 0.068 . LmxM.27.0460 135 VLVLRTR|ST 0.105 . LmxM.27.0460 148 GALGLSR|KP 0.064 . LmxM.27.0460 149 ALGLSRK|PT 0.075 . LmxM.27.0460 155 KPTLMYK|PL 0.058 . LmxM.27.0460 170 DVVMDYK|HE 0.065 . LmxM.27.0460 184 HELLDIK|LG 0.058 . LmxM.27.0460 196 THDEHSR|WD 0.081 . LmxM.27.0460 202 RWDPCWR|FI 0.142 . LmxM.27.0460 207 WRFIAIK|LD 0.063 . LmxM.27.0460 212 IKLDHYR|VG 0.082 . LmxM.27.0460 216 HYRVGAK|ER 0.059 . LmxM.27.0460 218 RVGAKER|TL 0.101 . LmxM.27.0460 221 AKERTLK|HS 0.170 . LmxM.27.0460 229 SSTEHHK|PT 0.094 . LmxM.27.0460 242 PQTHACK|TS 0.065 . LmxM.27.0460 246 ACKTSDR|VA 0.118 . LmxM.27.0460 271 LSPGPPR|VE 0.077 . LmxM.27.0460 287 GDASLVR|SA 0.192 . LmxM.27.0460 290 SLVRSAK|AL 0.280 . LmxM.27.0460 307 AHAYSER|FP 0.086 . LmxM.27.0460 322 STLSPPK|PV 0.081 . LmxM.27.0460 357 LLSNYMR|LL 0.106 . LmxM.27.0460 368 ISEQYYK|GI 0.075 . LmxM.27.0460 378 TVDNNNR|AL 0.086 . LmxM.27.0460 381 NNNRALK|LC 0.143 . LmxM.27.0460 392 DLDTAER|DS 0.100 . LmxM.27.0460 400 SGAENQR|RL 0.092 . LmxM.27.0460 401 GAENQRR|LQ 0.168 . LmxM.27.0460 417 PLSAEAK|RV 0.096 . LmxM.27.0460 418 LSAEAKR|VA 0.146 . LmxM.27.0460 423 KRVAANR|KL 0.096 . LmxM.27.0460 424 RVAANRK|LK 0.082 . LmxM.27.0460 426 AANRKLK|PP 0.123 . LmxM.27.0460 429 RKLKPPK|RD 0.067 . LmxM.27.0460 430 KLKPPKR|DR 0.308 . LmxM.27.0460 432 KPPKRDR|GA 0.134 . LmxM.27.0460 436 RDRGAAK|NA 0.117 . LmxM.27.0460 447 SGSGGGR|HR 0.088 . LmxM.27.0460 449 SGGGRHR|QM 0.111 . LmxM.27.0460 459 SSGAVGR|GK 0.133 . LmxM.27.0460 461 GAVGRGK|AN 0.059 . LmxM.27.0460 464 GRGKANK|RT 0.086 . LmxM.27.0460 465 RGKANKR|TS 0.138 . LmxM.27.0460 480 VGAAVGK|RT 0.066 . LmxM.27.0460 481 GAAVGKR|TV 0.239 . LmxM.27.0460 492 AAVQPHR|SP 0.112 . LmxM.27.0460 495 QPHRSPK|MH 0.156 . LmxM.27.0460 522 PSAVSER|AA 0.149 . LmxM.27.0460 538 GNSHISR|PC 0.111 . LmxM.27.0460 545 PCVSFER|IV 0.125 . LmxM.27.0460 594 APPLTPR|NY 0.087 . LmxM.27.0460 599 PRNYDAR|KP 0.094 . LmxM.27.0460 600 RNYDARK|PL 0.149 . LmxM.27.0460 610 QYEPSLR|ST 0.130 . LmxM.27.0460 626 STPFSLK|AT 0.059 . LmxM.27.0460 634 TAMCSPR|R- 0.100 . LmxM.27.0460 635 AMCSPRR|-- 0.135 . ____________________________^_________________

  • Fasta :-

    >LmxM.27.0460 ATGTCGGATAAAGTGCTGGCCATTATGGAGGAGCTGAGTCAGCAGAACCCCTTTCACAAC CAGGAAGACTTACCAGACCCTCCGCGGCCAAGCGAGACGGCTATCCCTCGCGATCGCCCT TCCGTGGAGCAGGTCCCATTCATTCAGAAGCAGATTAGCATCCTCAGCTACAACCATCTG CCTCGCACCTTCTTCTCCTTAGAAAAACACCGCTCACTGCAGAGCATCCTGTTTACGGCA AAGGAGGTGCTGTACGAGGCACTACCCATCCGCTGCCTCGAGGCAACCTTTGTGGCACTG CACTACACCCAGACGCTGCGCGACATCGACCGTATTCCACTCTCCTTCAAGTCGGAGGCA AACGGCAACTTCTACCGCCACATCGTCCTCGTCCTCCGCACCCGCTCCACGCCAGCCCTC TACGGTGCCCTCGGCCTCAGTCGCAAGCCTACGCTCATGTACAAGCCACTAGCGTATCAC TCCCTCTTTGATGTAGTGATGGACTACAAGCACGAGTACGAGGCACTCGGGCACGAGCTG CTTGACATAAAGCTGGGTATCGCCATCACACACGATGAACACAGCCGCTGGGACCCGTGC TGGCGTTTCATTGCCATCAAGCTTGACCACTACCGCGTCGGCGCCAAGGAAAGGACACTG AAGCACTCGTCTACGGAGCACCACAAACCGACTTCGCCAGGCACGCCGCAAACGCACGCA TGCAAGACCAGCGACCGCGTGGCCAACGACTCGTTCTCTTCCTCAAACGGCGGTCACACC GCGCTACCACCGCTCAGCCCAGGCCCTCCTCGCGTAGAGACCTCCATACACTGCGTCAAT GGGGACGCGTCGTTAGTGCGCTCAGCGAAAGCTCTGGGTGCCTCGCACAGCGAGACGGTG GCGCATGCCTATTCGGAGCGATTCCCCCCACTGAGCACATGCGGCTCCACCTTGTCACCC CCAAAGCCAGTTTCTAGTGCGTCGCCTTCGCTTCCGCATCCGCTGAGCACGACAGACGCG ACTGTCGAGACGTACGCGCCACTGGCGCAGCTGCTGAGCAACTACATGCGACTCCTTCCC ACCATCAGCGAGCAGTACTACAAGGGCATCGCAACTGTGGACAACAACAACAGAGCACTC AAGCTGTGCTTCATGGACCTCGATACCGCGGAACGGGACTCCGGTGCGGAGAACCAGCGC CGACTGCAGCTCATCGGCGAGATGCAGTCCCCGCTGAGCGCGGAGGCAAAGCGGGTGGCG GCCAACCGCAAGTTGAAGCCACCCAAGAGGGATAGGGGTGCCGCGAAGAACGCGAGCGGC AGTGGCAGTGGCGGCGGGAGGCATCGACAGATGAGCAGCAGTGGCGCTGTCGGCCGCGGA AAAGCAAACAAGCGCACCTCTCTGGCTTTGCCGCTCTCGGTTGGTGCGGCGGTCGGCAAG AGGACTGTCCCATCGGCGGCGGTGCAGCCCCACCGCTCCCCTAAGATGCATCCCTCGTTG GTGGTACCGGACCTTTCTTACCCGTCTGCGTCACTTGACACACCGCCTTCTGCGGTGTCG GAGCGCGCCGCGTCCCTCTCTGCTCCCTTGACGGGCAACAGCCACATCTCTCGCCCGTGC GTGTCCTTTGAGCGGATTGTGGTAGACGCGCAGAATACCGGCAGCTTAGCGTCACCGCTG TGCAGCGGGGATGGCGGGACGGAAGGGTACATGAGCCCGTGCGATGCCGGTCCTGACAGC TGCTCTGAGGACGCCTTTGCAGCTCCGCCCCTCACCCCGCGCAACTACGATGCACGAAAG CCGCTTTCCCAGTATGAGCCGTCTCTACGCTCTACATCATCGGCGAGCGATCTCTTTTCC ACGCCCTTCTCGCTGAAGGCTACCGCCATGTGTTCACCACGCCGGTAG
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  • Fasta :-

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.27.0460223 STLKHSSTEH0.996unspLmxM.27.0460223 STLKHSSTEH0.996unspLmxM.27.0460223 STLKHSSTEH0.996unspLmxM.27.0460224 SLKHSSTEHH0.992unspLmxM.27.0460295 SALGASHSET0.992unspLmxM.27.0460394 SAERDSGAEN0.997unspLmxM.27.0460413 SQSPLSAEAK0.994unspLmxM.27.0460452 SHRQMSSSGA0.996unspLmxM.27.0460493 SQPHRSPKMH0.994unspLmxM.27.0460572 SEGYMSPCDA0.998unspLmxM.27.0460603 SRKPLSQYEP0.996unspLmxM.27.0460624 SSTPFSLKAT0.991unspLmxM.27.046041 SRDRPSVEQV0.995unspLmxM.27.0460195 SHDEHSRWDP0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India