LmxM.27.1270 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.27.1270OTHER0.9998140.0000160.000170
No Results

  • Fasta :-

    >LmxM.27.1270 MFKLDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYY VNKCLLFFDKEENPVDFTQRDPSTKRVFAEALDLEAKLKVKELPIEYKAMIEEIDRREPE RRRIVAQQLESDSGDGDGNKQLSKAVDMHLTRQQQLLSSENSSVDELLQRLHWASVPGTK SITPHIVPNGPPAPPPTYDTVSRPEPSPAPVNPVPGDRHALPASASHRSYTTCILNPSNA SLSVRRRGIVNLGNTCYMNSVLQLLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFV IRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRI VFPEIDNCKGTDDELARRYWAQYYQKNSSVIVDYCAFQERSAIVCPSCDHQSRSFNVSLS IEIPIPRTSSKVSLDDCFAAYCREEILDNSSMYMCPSCHQKVNARKQLLFYSAPPVLFIT LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSGFSKTKYHLVGIINHQGNMYGGHYTA DAVGADGVWCHFSDEQVTKADVADNNLAYILCYVR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/473 Sequence name : 473 Sequence length : 575 VALUES OF COMPUTED PARAMETERS Coef20 : 3.459 CoefTot : 0.009 ChDiff : 1 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.959 1.159 0.009 0.435 MesoH : -0.202 0.234 -0.320 0.198 MuHd_075 : 21.584 16.347 6.219 5.060 MuHd_095 : 36.574 15.469 8.540 7.266 MuHd_100 : 25.833 6.909 5.434 4.388 MuHd_105 : 16.374 8.103 2.806 2.461 Hmax_075 : 14.117 15.400 2.610 5.693 Hmax_095 : 10.150 8.400 1.110 4.813 Hmax_100 : 10.900 7.800 0.851 4.090 Hmax_105 : 0.350 5.700 -2.539 2.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7912 0.2088 DFMC : 0.7751 0.2249
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 575 LmxM.27.1270 MFKLDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYYVNKCLLFFDKEENPVDFTQR 80 DPSTKRVFAEALDLEAKLKVKELPIEYKAMIEEIDRREPERRRIVAQQLESDSGDGDGNKQLSKAVDMHLTRQQQLLSSE 160 NSSVDELLQRLHWASVPGTKSITPHIVPNGPPAPPPTYDTVSRPEPSPAPVNPVPGDRHALPASASHRSYTTCILNPSNA 240 SLSVRRRGIVNLGNTCYMNSVLQLLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFVIRELNRSDCKFSVSASPFKS 320 ALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRIVFPEIDNCKGTDDELARRYWAQYYQKNSSVIVDYCAFQER 400 SAIVCPSCDHQSRSFNVSLSIEIPIPRTSSKVSLDDCFAAYCREEILDNSSMYMCPSCHQKVNARKQLLFYSAPPVLFIT 480 LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSGFSKTKYHLVGIINHQGNMYGGHYTADAVGADGVWCHFSDEQVTKA 560 DVADNNLAYILCYVR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.27.1270 3 ----MFK|LD 0.060 . LmxM.27.1270 7 MFKLDYK|IS 0.061 . LmxM.27.1270 15 SYDEFVR|TI 0.083 . LmxM.27.1270 22 TIYHHAR|QY 0.159 . LmxM.27.1270 27 ARQYEIK|VS 0.078 . LmxM.27.1270 33 KVSDPYK|QC 0.075 . LmxM.27.1270 44 VNALITK|AK 0.065 . LmxM.27.1270 46 ALITKAK|DE 0.090 . LmxM.27.1270 51 AKDEESK|RN 0.059 . LmxM.27.1270 52 KDEESKR|NY 0.142 . LmxM.27.1270 63 AYYYVNK|CL 0.062 . LmxM.27.1270 70 CLLFFDK|EE 0.066 . LmxM.27.1270 80 PVDFTQR|DP 0.112 . LmxM.27.1270 85 QRDPSTK|RV 0.083 . LmxM.27.1270 86 RDPSTKR|VF 0.154 . LmxM.27.1270 97 ALDLEAK|LK 0.061 . LmxM.27.1270 99 DLEAKLK|VK 0.059 . LmxM.27.1270 101 EAKLKVK|EL 0.063 . LmxM.27.1270 108 ELPIEYK|AM 0.064 . LmxM.27.1270 116 MIEEIDR|RE 0.064 . LmxM.27.1270 117 IEEIDRR|EP 0.101 . LmxM.27.1270 121 DRREPER|RR 0.094 . LmxM.27.1270 122 RREPERR|RI 0.214 . LmxM.27.1270 123 REPERRR|IV 0.223 . LmxM.27.1270 140 GDGDGNK|QL 0.083 . LmxM.27.1270 144 GNKQLSK|AV 0.090 . LmxM.27.1270 152 VDMHLTR|QQ 0.067 . LmxM.27.1270 170 VDELLQR|LH 0.079 . LmxM.27.1270 180 ASVPGTK|SI 0.084 . LmxM.27.1270 203 TYDTVSR|PE 0.073 . LmxM.27.1270 218 NPVPGDR|HA 0.096 . LmxM.27.1270 228 PASASHR|SY 0.192 . LmxM.27.1270 245 NASLSVR|RR 0.110 . LmxM.27.1270 246 ASLSVRR|RG 0.108 . LmxM.27.1270 247 SLSVRRR|GI 0.277 . LmxM.27.1270 287 SHLLNTK|GK 0.058 . LmxM.27.1270 289 LLNTKGK|LT 0.075 . LmxM.27.1270 292 TKGKLTR|LI 0.089 . LmxM.27.1270 302 SFSFVIR|EL 0.110 . LmxM.27.1270 306 VIRELNR|SD 0.104 . LmxM.27.1270 310 LNRSDCK|FS 0.066 . LmxM.27.1270 319 VSASPFK|SA 0.082 . LmxM.27.1270 342 DANEFLR|VV 0.148 . LmxM.27.1270 359 NVNDSNR|IV 0.167 . LmxM.27.1270 369 PEIDNCK|GT 0.074 . LmxM.27.1270 377 TDDELAR|RY 0.096 . LmxM.27.1270 378 DDELARR|YW 0.116 . LmxM.27.1270 386 WAQYYQK|NS 0.070 . LmxM.27.1270 400 YCAFQER|SA 0.169 . LmxM.27.1270 413 SCDHQSR|SF 0.158 . LmxM.27.1270 427 IEIPIPR|TS 0.086 . LmxM.27.1270 431 IPRTSSK|VS 0.065 . LmxM.27.1270 443 CFAAYCR|EE 0.067 . LmxM.27.1270 461 CPSCHQK|VN 0.074 . LmxM.27.1270 465 HQKVNAR|KQ 0.073 . LmxM.27.1270 466 QKVNARK|QL 0.071 . LmxM.27.1270 482 VLFITLK|RF 0.060 . LmxM.27.1270 483 LFITLKR|FR 0.204 . LmxM.27.1270 485 ITLKRFR|CY 0.107 . LmxM.27.1270 495 DFTTASK|VN 0.060 . LmxM.27.1270 504 SSVFFSK|TL 0.072 . LmxM.27.1270 518 MCSGFSK|TK 0.072 . LmxM.27.1270 520 SGFSKTK|YH 0.067 . LmxM.27.1270 559 SDEQVTK|AD 0.066 . LmxM.27.1270 575 YILCYVR|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LmxM.27.1270 ATGTTCAAACTTGACTATAAGATTTCTTACGACGAGTTTGTGAGAACAATCTACCATCAT GCGCGCCAGTACGAGATAAAAGTCTCCGATCCTTACAAGCAATGCGTCACTGTCAATGCA CTCATCACTAAAGCCAAGGACGAAGAGAGCAAACGAAACTACGCCAATGCATACTACTAC GTCAACAAGTGCCTTTTATTTTTCGATAAGGAAGAGAACCCGGTTGACTTCACGCAAAGA GATCCATCGACAAAGAGGGTATTTGCTGAAGCTCTTGACCTTGAGGCTAAACTGAAGGTG AAGGAACTGCCGATTGAGTACAAGGCTATGATCGAAGAAATCGACCGTCGGGAGCCGGAG CGCCGTCGCATCGTAGCCCAGCAGCTGGAGTCGGATAGTGGAGATGGTGACGGAAACAAG CAGCTTTCTAAGGCGGTAGACATGCACTTGACAAGACAGCAGCAACTGCTTTCTTCGGAG AATAGCAGTGTAGATGAGTTGTTGCAGCGACTGCACTGGGCTTCGGTACCTGGCACGAAG AGCATTACCCCACACATAGTCCCCAATGGCCCGCCTGCTCCTCCTCCAACGTACGACACC GTCTCCAGGCCCGAACCGTCTCCAGCGCCAGTAAACCCCGTGCCAGGCGACCGCCACGCT CTCCCTGCCTCAGCTTCGCATAGAAGCTACACAACCTGTATCCTGAATCCTTCAAATGCC TCCCTGTCCGTCCGACGGAGGGGCATTGTAAATTTGGGCAACACATGCTACATGAATAGT GTGCTGCAGCTACTCAATTCCACACCACTAGGCCAGTACTTTCTCACTGATGCCTATGTG TCCCACCTGCTTAATACAAAGGGAAAGCTAACTCGCTTGATCAACTCATTTAGCTTTGTT ATCCGCGAGCTCAATCGTTCCGACTGCAAGTTTTCAGTGAGCGCGTCGCCGTTCAAGTCT GCCCTCGGAGACTATTACGAGGGGTTTCAAAACTCAAGCCAGCAGGACGCAAACGAATTT CTACGTGTTGTGCTGGACGGCATTCACGGAGCACTGAATGTGAACGACAGTAATAGAATT GTGTTTCCCGAGATTGACAACTGCAAAGGCACCGATGACGAACTTGCTCGACGGTACTGG GCACAGTACTATCAGAAGAATTCTTCCGTTATCGTTGACTACTGCGCGTTTCAGGAGCGG AGCGCGATTGTTTGCCCCTCCTGTGACCACCAGTCACGCTCTTTCAATGTTTCTCTCAGC ATTGAAATTCCTATTCCGCGGACCTCGTCAAAGGTTTCACTCGACGACTGCTTTGCCGCG TACTGCCGGGAGGAAATTCTTGACAATAGCTCTATGTACATGTGCCCTAGCTGTCACCAG AAGGTGAACGCCCGGAAGCAGCTGCTGTTTTATTCAGCACCACCAGTTCTATTTATTACT CTGAAGCGGTTCCGTTGTTACGGTGACTTCACCACAGCCTCAAAAGTCAACTCGAGCGTT TTCTTTAGTAAAACACTGAACATTGCTTCGTATATGTGCTCCGGATTCTCGAAAACAAAG TACCATTTGGTGGGTATTATCAATCACCAAGGCAACATGTATGGCGGTCACTATACTGCA GATGCTGTTGGTGCTGATGGCGTGTGGTGCCACTTCAGCGATGAGCAGGTGACAAAAGCA GACGTGGCAGATAATAATCTGGCCTATATTCTCTGCTACGTACGTTGA
  • Download Fasta

  • Fasta :-

    MFKLDYKISYDEFVRTIYHHARQYEIKVSDPYKQCVTVNALITKAKDEESKRNYANAYYY VNKCLLFFDKEENPVDFTQRDPSTKRVFAEALDLEAKLKVKELPIEYKAMIEEIDRREPE RRRIVAQQLESDSGDGDGNKQLSKAVDMHLTRQQQLLSSENSSVDELLQRLHWASVPGTK SITPHIVPNGPPAPPPTYDTVSRPEPSPAPVNPVPGDRHALPASASHRSYTTCILNPSNA SLSVRRRGIVNLGNTCYMNSVLQLLNSTPLGQYFLTDAYVSHLLNTKGKLTRLINSFSFV IRELNRSDCKFSVSASPFKSALGDYYEGFQNSSQQDANEFLRVVLDGIHGALNVNDSNRI VFPEIDNCKGTDDELARRYWAQYYQKNSSVIVDYCAFQERSAIVCPSCDHQSRSFNVSLS IEIPIPRTSSKVSLDDCFAAYCREEILDNSSMYMCPSCHQKVNARKQLLFYSAPPVLFIT LKRFRCYGDFTTASKVNSSVFFSKTLNIASYMCSGFSKTKYHLVGIINHQGNMYGGHYTA DAVGADGVWCHFSDEQVTKADVADNNLAYILCYVR

  • title: Active Site
  • coordinates: N251,C256,H537,D554
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.27.1270429 SIPRTSSKVS0.995unspLmxM.27.1270429 SIPRTSSKVS0.995unspLmxM.27.1270429 SIPRTSSKVS0.995unspLmxM.27.1270433 SSSKVSLDDC0.995unspLmxM.27.127083 SQRDPSTKRV0.998unspLmxM.27.1270163 SSENSSVDEL0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India