LmxM.27.1870 | trypanothione synthetase

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.27.1870OTHER0.6999860.0017880.298226
No Results

  • Fasta :-

    >LmxM.27.1870 MASLQRASVSFNRPGHIPFGAVQGYAPGGIPAYSNKHDHYFSGERSVEDNIFFGFKYQCV EFARRWLLARKGLVLPDVNWACHVFQLKEVRDAATAESFAVLPVRNGAEAKPEADALLVY PSTDTNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAYKLKLHHRDGIWTIIDDIDAD EIEIPLGWVTFPGRENRPEGAPPVALHPSLHFNEPPKPYLLRRNFVPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEK LRLFSIPEEFWPRIRHSWRYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQ QKWAESVGLDKQGTRGSGFAVERNLKRAWANSGVTGRVHFCVDEEKEEQYTALYCMQAAE AVGLEGKLCILFDEFRFDDNGHIVDSDGVRVRHVWKTWMWESAITDYYAAREERGENWKP SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKCGYAKKPIVGRVGSNVTITSGDGAVHAESGGNYGTRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGVREDKSVITGVDSPFAAIRIKMDKLPHPVTHKDIDKMAEDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/192 Sequence name : 192 Sequence length : 652 VALUES OF COMPUTED PARAMETERS Coef20 : 3.925 CoefTot : -2.200 ChDiff : -23 ZoneTo : 37 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.276 1.065 0.127 0.615 MesoH : -0.931 0.178 -0.463 0.167 MuHd_075 : 18.268 12.645 4.195 4.280 MuHd_095 : 28.647 14.519 6.293 6.106 MuHd_100 : 30.461 14.556 7.414 6.452 MuHd_105 : 33.588 14.854 8.779 7.356 Hmax_075 : 8.283 15.867 1.104 5.530 Hmax_095 : 12.075 8.000 1.432 4.078 Hmax_100 : 13.200 8.300 1.432 4.540 Hmax_105 : 14.200 12.300 1.589 5.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3831 0.6169 DFMC : 0.3549 0.6451 This protein is probably imported in mitochondria. f(Ser) = 0.1081 f(Arg) = 0.0541 CMi = 0.74212 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 652 LmxM.27.1870 MASLQRASVSFNRPGHIPFGAVQGYAPGGIPAYSNKHDHYFSGERSVEDNIFFGFKYQCVEFARRWLLARKGLVLPDVNW 80 ACHVFQLKEVRDAATAESFAVLPVRNGAEAKPEADALLVYPSTDTNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAY 160 KLKLHHRDGIWTIIDDIDADEIEIPLGWVTFPGRENRPEGAPPVALHPSLHFNEPPKPYLLRRNFVPTESKANWLDMNNP 240 AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRLFSIPEEFWPRIRHSWRY 320 QQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQQKWAESVGLDKQGTRGSGFAVERNLKRAWANSGVTGRVHF 400 CVDEEKEEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHIVDSDGVRVRHVWKTWMWESAITDYYAAREERGENWKP 480 SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDELRKCGYAKKPIVGRVGSNVTI 560 TSGDGAVHAESGGNYGTRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGVREDKSVITGVDSPFAAIRIKMDKLPHPV 640 THKDIDKMAEDE 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.27.1870 6 -MASLQR|AS 0.069 . LmxM.27.1870 13 ASVSFNR|PG 0.086 . LmxM.27.1870 36 IPAYSNK|HD 0.072 . LmxM.27.1870 45 HYFSGER|SV 0.184 . LmxM.27.1870 56 NIFFGFK|YQ 0.062 . LmxM.27.1870 64 QCVEFAR|RW 0.083 . LmxM.27.1870 65 CVEFARR|WL 0.096 . LmxM.27.1870 70 RRWLLAR|KG 0.077 . LmxM.27.1870 71 RWLLARK|GL 0.065 . LmxM.27.1870 88 CHVFQLK|EV 0.081 . LmxM.27.1870 91 FQLKEVR|DA 0.128 . LmxM.27.1870 105 FAVLPVR|NG 0.080 . LmxM.27.1870 111 RNGAEAK|PE 0.073 . LmxM.27.1870 150 VADQNYR|FH 0.072 . LmxM.27.1870 153 QNYRFHK|WE 0.136 . LmxM.27.1870 161 ESSYAYK|LK 0.081 . LmxM.27.1870 163 SYAYKLK|LH 0.074 . LmxM.27.1870 167 KLKLHHR|DG 0.104 . LmxM.27.1870 194 WVTFPGR|EN 0.082 . LmxM.27.1870 197 FPGRENR|PE 0.301 . LmxM.27.1870 217 HFNEPPK|PY 0.063 . LmxM.27.1870 222 PKPYLLR|RN 0.079 . LmxM.27.1870 223 KPYLLRR|NF 0.162 . LmxM.27.1870 231 FVPTESK|AN 0.055 . LmxM.27.1870 243 MNNPAER|LF 0.095 . LmxM.27.1870 255 FGMDVSR|TR 0.072 . LmxM.27.1870 257 MDVSRTR|LE 0.089 . LmxM.27.1870 261 RTRLEEK|VV 0.089 . LmxM.27.1870 275 NHEFHLR|CV 0.135 . LmxM.27.1870 300 VIESDEK|LR 0.053 . LmxM.27.1870 302 ESDEKLR|LF 0.090 . LmxM.27.1870 313 PEEFWPR|IR 0.078 . LmxM.27.1870 315 EFWPRIR|HS 0.089 . LmxM.27.1870 319 RIRHSWR|YQ 0.148 . LmxM.27.1870 328 QTYISGR|FD 0.099 . LmxM.27.1870 341 NETGEVK|CF 0.060 . LmxM.27.1870 358 TLLECGR|IQ 0.079 . LmxM.27.1870 362 CGRIQQK|WA 0.080 . LmxM.27.1870 371 ESVGLDK|QG 0.059 . LmxM.27.1870 375 LDKQGTR|GS 0.096 . LmxM.27.1870 383 SGFAVER|NL 0.088 . LmxM.27.1870 386 AVERNLK|RA 0.095 . LmxM.27.1870 387 VERNLKR|AW 0.214 . LmxM.27.1870 397 NSGVTGR|VH 0.087 . LmxM.27.1870 406 FCVDEEK|EE 0.052 . LmxM.27.1870 427 AVGLEGK|LC 0.054 . LmxM.27.1870 436 ILFDEFR|FD 0.091 . LmxM.27.1870 450 VDSDGVR|VR 0.081 . LmxM.27.1870 452 SDGVRVR|HV 0.181 . LmxM.27.1870 456 RVRHVWK|TW 0.071 . LmxM.27.1870 471 TDYYAAR|EE 0.093 . LmxM.27.1870 474 YAAREER|GE 0.226 . LmxM.27.1870 479 ERGENWK|PS 0.061 . LmxM.27.1870 483 NWKPSPK|DK 0.063 . LmxM.27.1870 485 KPSPKDK|VR 0.068 . LmxM.27.1870 487 SPKDKVR|LC 0.103 . LmxM.27.1870 507 YFEPMWK|VI 0.055 . LmxM.27.1870 513 KVIPSNK|AI 0.069 . LmxM.27.1870 531 EHPAILK|AE 0.057 . LmxM.27.1870 541 ELTDELR|KC 0.084 . LmxM.27.1870 542 LTDELRK|CG 0.072 . LmxM.27.1870 547 RKCGYAK|KP 0.075 . LmxM.27.1870 548 KCGYAKK|PI 0.093 . LmxM.27.1870 553 KKPIVGR|VG 0.099 . LmxM.27.1870 578 GGNYGTR|NM 0.099 . LmxM.27.1870 589 QQLFELK|KQ 0.063 . LmxM.27.1870 590 QLFELKK|QD 0.081 . LmxM.27.1870 613 FSGTGVR|ED 0.077 . LmxM.27.1870 616 TGVREDK|SV 0.446 . LmxM.27.1870 630 SPFAAIR|IK 0.138 . LmxM.27.1870 632 FAAIRIK|MD 0.058 . LmxM.27.1870 635 IRIKMDK|LP 0.073 . LmxM.27.1870 643 PHPVTHK|DI 0.080 . LmxM.27.1870 647 THKDIDK|MA 0.090 . ____________________________^_________________

  • Fasta :-

    >LmxM.27.1870 ATGGCGTCTCTGCAGCGCGCGTCTGTGAGCTTTAATAGGCCGGGCCACATTCCGTTTGGC GCTGTGCAGGGATACGCCCCGGGTGGCATCCCGGCGTACAGTAACAAGCATGATCACTAC TTCTCCGGCGAGCGCAGTGTGGAGGACAACATCTTCTTCGGCTTCAAGTACCAGTGCGTC GAGTTTGCGCGCCGCTGGCTTCTGGCGCGCAAGGGGCTGGTGCTGCCCGATGTGAACTGG GCCTGCCACGTTTTCCAATTGAAGGAGGTGAGGGACGCCGCCACGGCGGAGAGCTTCGCG GTATTGCCAGTGCGCAACGGTGCTGAGGCGAAGCCGGAGGCCGACGCGCTTCTCGTCTAC CCCTCCACCGATACAAATCCCGTTGGCCACGTCGGCGCCATCACCGAGGTGGGCGATGAC TACGTATGTGTCGCGGATCAGAACTACCGCTTCCACAAGTGGGAGTCCTCCTACGCGTAC AAACTGAAGCTTCATCACAGGGACGGCATCTGGACCATCATCGATGACATTGACGCGGAC GAAATCGAGATCCCGCTTGGATGGGTGACGTTTCCTGGCCGCGAGAACCGGCCGGAAGGG GCGCCGCCGGTGGCGCTGCATCCGTCACTGCACTTTAATGAGCCGCCAAAACCGTATCTG CTGCGCCGTAACTTTGTGCCGACGGAGTCCAAGGCGAACTGGCTCGACATGAACAACCCG GCGGAGCGGCTATTCGTAGAGGAGTTTGGCATGGATGTCAGCCGTACCCGGCTGGAGGAG AAGGTCGTCAGCTACTACGAGTCAAATCACGAGTTCCATCTGCGGTGCGTCGCGTACGGA ACGCAGCTGCACGCCATCTTCATGGAGGCAACCGCGCAGGTGATCGAGAGCGATGAGAAG CTCCGACTCTTTTCCATTCCTGAGGAGTTCTGGCCCCGCATCCGCCACTCGTGGAGGTAC CAGCAGACGTACATTTCTGGTCGCTTCGACTTCGCCTTCAACAACGAGACGGGCGAGGTC AAATGCTTCGAGTACAACGCCGACAGCGCGTCGACGCTGCTAGAGTGCGGCCGCATTCAG CAAAAGTGGGCCGAGTCGGTGGGGCTAGACAAGCAGGGCACGCGCGGCTCCGGCTTCGCG GTGGAGCGCAACCTCAAGAGGGCGTGGGCCAACAGTGGGGTGACTGGCCGCGTTCACTTC TGCGTGGATGAGGAGAAGGAAGAGCAGTACACGGCCCTCTACTGCATGCAGGCCGCTGAG GCGGTCGGGTTGGAGGGCAAGCTGTGCATCTTGTTTGATGAGTTCCGCTTTGATGATAAT GGCCACATTGTCGATAGCGACGGCGTGCGCGTGCGCCATGTGTGGAAGACGTGGATGTGG GAGTCGGCCATCACGGACTATTACGCCGCCCGGGAGGAGCGGGGCGAGAACTGGAAGCCG TCCCCGAAGGACAAGGTGCGCCTGTGCGACTTGCTCCTCGGCGATGACTGGGAAATTCTC TACTTCGAGCCGATGTGGAAGGTCATTCCGAGCAACAAGGCTATCCTGCCCATGATCTAC CACAACCACCCCGAACACCCCGCCATCTTGAAGGCGGAGTATGAGTTGACTGACGAGCTG CGCAAGTGCGGGTACGCCAAGAAGCCGATTGTCGGCCGCGTGGGCAGCAACGTGACCATC ACCTCCGGCGACGGCGCGGTGCACGCTGAGTCCGGTGGCAACTATGGAACGCGCAACATG ATTTACCAGCAACTGTTTGAGCTGAAGAAGCAGGATGACTACTACGCCATCATTGGCGGC TGGATGATCGGCGACGCCTTCAGCGGCACCGGCGTCCGCGAGGACAAGTCAGTCATCACC GGCGTCGACAGCCCCTTCGCCGCCATTCGCATCAAGATGGACAAACTCCCACACCCCGTG ACGCACAAGGATATCGACAAGATGGCCGAGGACGAGTAG
  • Download Fasta

  • Fasta :-

    MASLQRASVSFNRPGHIPFGAVQGYAPGGIPAYSNKHDHYFSGERSVEDNIFFGFKYQCV EFARRWLLARKGLVLPDVNWACHVFQLKEVRDAATAESFAVLPVRNGAEAKPEADALLVY PSTDTNPVGHVGAITEVGDDYVCVADQNYRFHKWESSYAYKLKLHHRDGIWTIIDDIDAD EIEIPLGWVTFPGRENRPEGAPPVALHPSLHFNEPPKPYLLRRNFVPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEK LRLFSIPEEFWPRIRHSWRYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGRIQ QKWAESVGLDKQGTRGSGFAVERNLKRAWANSGVTGRVHFCVDEEKEEQYTALYCMQAAE AVGLEGKLCILFDEFRFDDNGHIVDSDGVRVRHVWKTWMWESAITDYYAAREERGENWKP SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKCGYAKKPIVGRVGSNVTITSGDGAVHAESGGNYGTRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGVREDKSVITGVDSPFAAIRIKMDKLPHPVTHKDIDKMAEDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.27.1870481 SNWKPSPKDK0.998unspLmxM.27.1870481 SNWKPSPKDK0.998unspLmxM.27.1870481 SNWKPSPKDK0.998unspLmxM.27.187046 SSGERSVEDN0.997unspLmxM.27.1870317 SRIRHSWRYQ0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India