LmxM.28.0570 | major surface protease gp63, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.28.0570SP0.0036250.9962430.000132CS pos: 26-27. VQA-HP. Pr: 0.5068
No Results

  • Fasta :-

    >LmxM.28.0570 MSRTLLRITVTFVLVCSVVGVGAVQAHPERGDSEEPRCGFDELEAHTIGTRVSEISRVEP PAGELAVAAAATGAWQPIRIAVFTDDISNSSQHCTASRQSRPSFRGDRVTCSAADVLTNR KKQALLELLIPSAVELHKERLNVQRENGNIVVNPFINKHPICGQFSIPKDHMKIGVKDAD FVLYMSAGPTSDNTIAWALKCQSFEDGRPSVGVANISPKYIAADPKIVRVIAHEVLHALG FTHSVFKEQNMLVMASFRGKSPSPVIRSEKVVAMARQHYGCQTQAFMELEDEGEKGSVSS HWKRRNAKDELMASVSGVGIYSALTIAAMEDTGYYKGNYDKAESMAYGHLAGCKLKDDRC VIKGTSQNNNMFCDAPDAPSSCTSDRRGVGKCIFTYYDSNLPTQFQYFENPRLGGSDPLM DFCPFVGDADDTKCTAKTNALKGSVYGIMSRCVDTPVGFSVGGSAAQQHGICAEVQCGSS TYGVKVRGASAFQDCLPGKTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSRFL TDHSVTGVRTSVTAVVAVLLVVLFMA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/300 Sequence name : 300 Sequence length : 566 VALUES OF COMPUTED PARAMETERS Coef20 : 5.209 CoefTot : -0.005 ChDiff : 0 ZoneTo : 28 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.288 2.618 0.540 0.784 MesoH : -0.024 0.596 -0.168 0.255 MuHd_075 : 26.749 18.589 5.999 7.037 MuHd_095 : 29.873 10.805 6.711 5.582 MuHd_100 : 29.336 13.770 7.472 6.525 MuHd_105 : 29.177 17.701 6.913 7.210 Hmax_075 : 17.200 28.000 4.606 7.080 Hmax_095 : 18.800 19.000 4.601 5.680 Hmax_100 : 18.800 21.300 5.186 6.140 Hmax_105 : 18.600 27.650 5.186 6.950 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8267 0.1733 DFMC : 0.8061 0.1939
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 566 LmxM.28.0570 MSRTLLRITVTFVLVCSVVGVGAVQAHPERGDSEEPRCGFDELEAHTIGTRVSEISRVEPPAGELAVAAAATGAWQPIRI 80 AVFTDDISNSSQHCTASRQSRPSFRGDRVTCSAADVLTNRKKQALLELLIPSAVELHKERLNVQRENGNIVVNPFINKHP 160 ICGQFSIPKDHMKIGVKDADFVLYMSAGPTSDNTIAWALKCQSFEDGRPSVGVANISPKYIAADPKIVRVIAHEVLHALG 240 FTHSVFKEQNMLVMASFRGKSPSPVIRSEKVVAMARQHYGCQTQAFMELEDEGEKGSVSSHWKRRNAKDELMASVSGVGI 320 YSALTIAAMEDTGYYKGNYDKAESMAYGHLAGCKLKDDRCVIKGTSQNNNMFCDAPDAPSSCTSDRRGVGKCIFTYYDSN 400 LPTQFQYFENPRLGGSDPLMDFCPFVGDADDTKCTAKTNALKGSVYGIMSRCVDTPVGFSVGGSAAQQHGICAEVQCGSS 480 TYGVKVRGASAFQDCLPGKTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSRFLTDHSVTGVRTSVTAVVAVLL 560 VVLFMA 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.28.0570 3 ----MSR|TL 0.089 . LmxM.28.0570 7 MSRTLLR|IT 0.086 . LmxM.28.0570 30 VQAHPER|GD 0.106 . LmxM.28.0570 37 GDSEEPR|CG 0.157 . LmxM.28.0570 51 AHTIGTR|VS 0.073 . LmxM.28.0570 57 RVSEISR|VE 0.078 . LmxM.28.0570 79 GAWQPIR|IA 0.090 . LmxM.28.0570 98 QHCTASR|QS 0.097 . LmxM.28.0570 101 TASRQSR|PS 0.460 . LmxM.28.0570 105 QSRPSFR|GD 0.105 . LmxM.28.0570 108 PSFRGDR|VT 0.198 . LmxM.28.0570 120 ADVLTNR|KK 0.078 . LmxM.28.0570 121 DVLTNRK|KQ 0.058 . LmxM.28.0570 122 VLTNRKK|QA 0.095 . LmxM.28.0570 138 SAVELHK|ER 0.059 . LmxM.28.0570 140 VELHKER|LN 0.082 . LmxM.28.0570 145 ERLNVQR|EN 0.128 . LmxM.28.0570 158 VNPFINK|HP 0.062 . LmxM.28.0570 169 GQFSIPK|DH 0.072 . LmxM.28.0570 173 IPKDHMK|IG 0.066 . LmxM.28.0570 177 HMKIGVK|DA 0.088 . LmxM.28.0570 200 TIAWALK|CQ 0.064 . LmxM.28.0570 208 QSFEDGR|PS 0.079 . LmxM.28.0570 219 VANISPK|YI 0.083 . LmxM.28.0570 226 YIAADPK|IV 0.088 . LmxM.28.0570 229 ADPKIVR|VI 0.080 . LmxM.28.0570 247 FTHSVFK|EQ 0.062 . LmxM.28.0570 258 LVMASFR|GK 0.121 . LmxM.28.0570 260 MASFRGK|SP 0.151 . LmxM.28.0570 267 SPSPVIR|SE 0.201 . LmxM.28.0570 270 PVIRSEK|VV 0.171 . LmxM.28.0570 276 KVVAMAR|QH 0.090 . LmxM.28.0570 295 LEDEGEK|GS 0.051 . LmxM.28.0570 303 SVSSHWK|RR 0.069 . LmxM.28.0570 304 VSSHWKR|RN 0.265 . LmxM.28.0570 305 SSHWKRR|NA 0.434 . LmxM.28.0570 308 WKRRNAK|DE 0.173 . LmxM.28.0570 336 EDTGYYK|GN 0.066 . LmxM.28.0570 341 YKGNYDK|AE 0.071 . LmxM.28.0570 354 GHLAGCK|LK 0.058 . LmxM.28.0570 356 LAGCKLK|DD 0.081 . LmxM.28.0570 359 CKLKDDR|CV 0.144 . LmxM.28.0570 363 DDRCVIK|GT 0.103 . LmxM.28.0570 386 SSCTSDR|RG 0.077 . LmxM.28.0570 387 SCTSDRR|GV 0.323 . LmxM.28.0570 391 DRRGVGK|CI 0.101 . LmxM.28.0570 412 QYFENPR|LG 0.076 . LmxM.28.0570 433 GDADDTK|CT 0.064 . LmxM.28.0570 437 DTKCTAK|TN 0.062 . LmxM.28.0570 442 AKTNALK|GS 0.064 . LmxM.28.0570 451 VYGIMSR|CV 0.106 . LmxM.28.0570 485 SSTYGVK|VR 0.063 . LmxM.28.0570 487 TYGVKVR|GA 0.207 . LmxM.28.0570 499 QDCLPGK|TY 0.062 . LmxM.28.0570 512 LSPSFSK|GY 0.060 . LmxM.28.0570 527 ESVCAIK|IN 0.058 . LmxM.28.0570 538 LYEEYSR|FL 0.092 . LmxM.28.0570 549 HSVTGVR|TS 0.076 . ____________________________^_________________

  • Fasta :-

    >LmxM.28.0570 ATGTCCCGCACGCTCTTGAGGATCACGGTGACCTTTGTGTTGGTGTGCTCTGTTGTCGGC GTGGGCGCGGTGCAGGCGCACCCAGAGCGAGGCGACTCAGAAGAGCCGCGCTGCGGGTTT GACGAGCTGGAGGCGCACACGATCGGCACTCGCGTGAGTGAGATAAGCCGTGTAGAGCCG CCAGCCGGGGAGCTTGCGGTTGCGGCTGCTGCAACGGGGGCCTGGCAGCCCATCCGCATT GCTGTCTTCACAGATGACATTTCGAACAGCAGCCAGCACTGCACCGCTTCGCGCCAGAGT CGGCCCAGCTTCCGTGGCGACAGGGTGACCTGCAGCGCAGCGGACGTTCTCACAAACAGA AAGAAACAGGCTCTGTTGGAGCTGCTGATTCCATCCGCAGTTGAGCTGCACAAAGAGCGG CTGAACGTGCAGCGGGAGAATGGCAACATCGTTGTCAACCCCTTTATTAATAAACACCCC ATCTGCGGTCAGTTCAGCATACCCAAAGACCACATGAAGATCGGTGTGAAGGACGCCGAC TTTGTTCTGTACATGTCTGCTGGACCAACATCTGACAATACCATCGCATGGGCGCTGAAG TGTCAGAGCTTCGAGGATGGTCGCCCGTCCGTGGGCGTGGCGAACATCTCGCCTAAGTAC ATCGCCGCCGACCCGAAGATCGTACGCGTCATCGCGCACGAGGTGTTGCATGCACTCGGC TTCACGCACTCAGTTTTCAAAGAACAGAATATGTTGGTGATGGCGTCCTTTCGAGGCAAG AGCCCCTCGCCGGTCATCCGCAGTGAAAAGGTGGTCGCCATGGCGCGGCAACATTACGGC TGCCAAACGCAGGCTTTCATGGAGCTAGAAGACGAGGGTGAAAAGGGATCCGTTTCTTCA CACTGGAAGCGCCGCAACGCCAAGGACGAGCTGATGGCGAGCGTCAGCGGCGTCGGCATC TACTCGGCGCTCACCATCGCCGCCATGGAGGACACGGGCTACTACAAGGGCAACTACGAC AAGGCGGAGTCGATGGCGTACGGCCACCTTGCGGGCTGCAAACTGAAAGACGATCGCTGC GTCATCAAAGGCACTTCACAGAATAATAATATGTTCTGCGACGCCCCCGACGCACCGTCG AGCTGCACCTCTGATCGCCGAGGCGTCGGGAAGTGCATATTCACCTATTACGACTCGAAT CTGCCCACCCAGTTTCAATACTTCGAAAACCCGAGGCTGGGTGGCTCGGATCCCCTGATG GACTTCTGCCCGTTTGTGGGAGATGCCGACGACACGAAATGCACCGCTAAGACGAACGCG CTGAAGGGCAGCGTATATGGCATCATGTCGCGCTGTGTCGACACACCGGTAGGTTTTTCC GTTGGTGGCTCGGCGGCCCAGCAGCATGGCATTTGTGCTGAAGTGCAGTGCGGCAGCTCA ACGTACGGCGTCAAAGTACGTGGTGCGTCTGCGTTCCAGGATTGTCTGCCAGGCAAAACC TACAACCTGTCGACACTGAGCCCGTCCTTCTCTAAAGGGTATTTGGTGTGCCCCTCTTAT GAGTCCGTGTGCGCCATCAAGATAAACGCCTCGCTGTACGAAGAATACAGTCGTTTTCTC ACCGACCACAGCGTGACTGGTGTTCGGACAAGTGTGACGGCGGTGGTGGCAGTGCTTCTG GTGGTGCTTTTCATGGCCTGA
  • Download Fasta

  • Fasta :-

    MSRTLLRITVTFVLVCSVVGVGAVQAHPERGDSEEPRCGFDELEAHTIGTRVSEISRVEP PAGELAVAAAATGAWQPIRIAVFTDDISNSSQHCTASRQSRPSFRGDRVTCSAADVLTNR KKQALLELLIPSAVELHKERLNVQRENGNIVVNPFINKHPICGQFSIPKDHMKIGVKDAD FVLYMSAGPTSDNTIAWALKCQSFEDGRPSVGVANISPKYIAADPKIVRVIAHEVLHALG FTHSVFKEQNMLVMASFRGKSPSPVIRSEKVVAMARQHYGCQTQAFMELEDEGEKGSVSS HWKRRNAKDELMASVSGVGIYSALTIAAMEDTGYYKGNYDKAESMAYGHLAGCKLKDDRC VIKGTSQNNNMFCDAPDAPSSCTSDRRGVGKCIFTYYDSNLPTQFQYFENPRLGGSDPLM DFCPFVGDADDTKCTAKTNALKGSVYGIMSRCVDTPVGFSVGGSAAQQHGICAEVQCGSS TYGVKVRGASAFQDCLPGKTYNLSTLSPSFSKGYLVCPSYESVCAIKINASLYEEYSRFL TDHSVTGVRTSVTAVVAVLLVVLFMA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.28.0570100 SASRQSRPSF0.991unspLmxM.28.0570100 SASRQSRPSF0.991unspLmxM.28.0570100 SASRQSRPSF0.991unspLmxM.28.0570103 SQSRPSFRGD0.998unspLmxM.28.0570203 SLKCQSFEDG0.995unspLmxM.28.0570384 SSSCTSDRRG0.992unspLmxM.28.057033 SERGDSEEPR0.995unspLmxM.28.057056 SVSEISRVEP0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India