LmxM.28.2800 | beta-lactamase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.28.2800OTHER0.9999080.0000350.000057
No Results

  • Fasta :-

    >LmxM.28.2800 MSGAPDAAAARPRLRIDFPPVKDKEELVKKQRAAVGQDEIREDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPVTAAYVCELHGKGIFNLETPLFQYLPELQCKLSEDVTARSVLSFTHGIDDAHLLKDA GARWHRPCFSPLLCAETHARVYERVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR SFTRSLHRANISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGTGYGAPTLWKDP NELFYQPTGQALQHETFKRPVAIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPANANGRPYYDLGVQYVPSKDHLQLTKPVFYGIDALPAAASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQRGEETEETLQRTM KRQKLTNYFTKYEAHRRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/206 Sequence name : 206 Sequence length : 498 VALUES OF COMPUTED PARAMETERS Coef20 : 3.837 CoefTot : -0.250 ChDiff : 8 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.388 1.276 0.269 0.535 MesoH : -0.635 0.279 -0.360 0.199 MuHd_075 : 19.536 10.350 4.594 3.925 MuHd_095 : 10.233 4.264 2.521 1.040 MuHd_100 : 11.982 6.151 2.195 0.804 MuHd_105 : 9.723 6.609 1.061 1.021 Hmax_075 : 12.950 12.133 1.633 4.993 Hmax_095 : 10.900 8.600 1.006 4.140 Hmax_100 : 9.900 7.100 0.620 3.340 Hmax_105 : 2.400 9.400 -0.762 2.963 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9735 0.0265 DFMC : 0.9565 0.0435
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 498 LmxM.28.2800 MSGAPDAAAARPRLRIDFPPVKDKEELVKKQRAAVGQDEIREDMEKDIPPVIRSVLELSHLTMSGHSQWLRAAPGYQGGL 80 FHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTLSLPVTAAYVCELHGKGIFNLETPLFQYLPELQCKLSEDVT 160 ARSVLSFTHGIDDAHLLKDAGARWHRPCFSPLLCAETHARVYERVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR 240 SFTRSLHRANISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGTGYGAPTLWKDPNELFYQPTGQALQHETFKRP 320 VAIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMDARELLGKPANANGRPYYDLGVQYVPSKDHLQLTKPVFYGI 400 DALPAAASFRYSCEHDLGCFGVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQRGEETEETLQRTM 480 KRQKLTNYFTKYEAHRRY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.28.2800 11 PDAAAAR|PR 0.075 . LmxM.28.2800 13 AAAARPR|LR 0.100 . LmxM.28.2800 15 AARPRLR|ID 0.088 . LmxM.28.2800 22 IDFPPVK|DK 0.068 . LmxM.28.2800 24 FPPVKDK|EE 0.059 . LmxM.28.2800 29 DKEELVK|KQ 0.069 . LmxM.28.2800 30 KEELVKK|QR 0.105 . LmxM.28.2800 32 ELVKKQR|AA 0.112 . LmxM.28.2800 41 VGQDEIR|ED 0.075 . LmxM.28.2800 46 IREDMEK|DI 0.090 . LmxM.28.2800 53 DIPPVIR|SV 0.152 . LmxM.28.2800 71 GHSQWLR|AA 0.145 . LmxM.28.2800 83 QGGLFHK|GK 0.064 . LmxM.28.2800 85 GLFHKGK|PF 0.071 . LmxM.28.2800 94 CFASGYR|DT 0.123 . LmxM.28.2800 98 GYRDTSR|PL 0.115 . LmxM.28.2800 105 PLDAEDK|GN 0.067 . LmxM.28.2800 110 DKGNHMK|LK 0.071 . LmxM.28.2800 112 GNHMKLK|DP 0.087 . LmxM.28.2800 135 VCELHGK|GI 0.074 . LmxM.28.2800 154 LPELQCK|LS 0.072 . LmxM.28.2800 162 SEDVTAR|SV 0.202 . LmxM.28.2800 178 DDAHLLK|DA 0.085 . LmxM.28.2800 183 LKDAGAR|WH 0.093 . LmxM.28.2800 186 AGARWHR|PC 0.183 . LmxM.28.2800 200 CAETHAR|VY 0.100 . LmxM.28.2800 204 HARVYER|VN 0.086 . LmxM.28.2800 207 VYERVNR|FL 0.285 . LmxM.28.2800 225 LTGQQQR|AN 0.083 . LmxM.28.2800 233 NLVQYVR|SS 0.120 . LmxM.28.2800 237 YVRSSPR|IT 0.092 . LmxM.28.2800 240 SSPRITR|SF 0.472 . LmxM.28.2800 244 ITRSFTR|SL 0.175 . LmxM.28.2800 248 FTRSLHR|AN 0.081 . LmxM.28.2800 268 AVETQLK|GR 0.056 . LmxM.28.2800 270 ETQLKGR|SF 0.162 . LmxM.28.2800 277 SFESDIR|TV 0.096 . LmxM.28.2800 298 GAPTLWK|DP 0.064 . LmxM.28.2800 318 LQHETFK|RP 0.063 . LmxM.28.2800 319 QHETFKR|PV 0.290 . LmxM.28.2800 327 VAIGDPR|NC 0.104 . LmxM.28.2800 349 PVEDYGK|LL 0.057 . LmxM.28.2800 362 DTIMDAR|EL 0.080 . LmxM.28.2800 367 ARELLGK|PA 0.074 . LmxM.28.2800 374 PANANGR|PY 0.117 . LmxM.28.2800 387 VQYVPSK|DH 0.064 . LmxM.28.2800 394 DHLQLTK|PV 0.081 . LmxM.28.2800 410 PAAASFR|YS 0.115 . LmxM.28.2800 428 VASCGSR|GA 0.108 . LmxM.28.2800 431 CGSRGAR|FF 0.364 . LmxM.28.2800 439 FVNNLSR|II 0.090 . LmxM.28.2800 447 IQHLFVK|HV 0.088 . LmxM.28.2800 452 VKHVLAK|GL 0.098 . LmxM.28.2800 458 KGLDPEK|PV 0.066 . LmxM.28.2800 468 LDDPAQR|GE 0.109 . LmxM.28.2800 478 TEETLQR|TM 0.082 . LmxM.28.2800 481 TLQRTMK|RQ 0.097 . LmxM.28.2800 482 LQRTMKR|QK 0.230 . LmxM.28.2800 484 RTMKRQK|LT 0.063 . LmxM.28.2800 491 LTNYFTK|YE 0.071 . LmxM.28.2800 496 TKYEAHR|RY 0.093 . LmxM.28.2800 497 KYEAHRR|Y- 0.154 . ____________________________^_________________

  • Fasta :-

    >LmxM.28.2800 ATGTCCGGGGCGCCCGACGCTGCAGCCGCCAGGCCGCGGCTGCGCATCGACTTTCCTCCC GTCAAGGACAAAGAGGAACTCGTCAAGAAGCAACGCGCCGCCGTCGGTCAGGACGAAATT CGTGAAGACATGGAGAAAGACATCCCACCAGTGATCCGTAGTGTTTTGGAGCTATCACAT CTAACCATGAGCGGTCATAGCCAGTGGCTGCGCGCTGCACCTGGCTACCAGGGCGGTCTC TTCCACAAGGGCAAGCCCTTCTGCTTTGCCAGTGGGTACCGAGACACTAGCCGTCCACTC GACGCCGAGGATAAGGGTAACCACATGAAGCTAAAGGACCCGCTCGTGTACGGCACCTTA TCGCTGCCAGTAACGGCTGCCTACGTATGCGAGCTGCACGGTAAGGGTATCTTCAACCTG GAAACACCTCTGTTCCAGTACCTACCAGAGCTCCAGTGCAAGCTCAGCGAGGACGTCACC GCCCGTAGCGTGCTCTCCTTCACCCATGGCATTGACGACGCACATCTGCTCAAGGATGCG GGAGCGCGCTGGCATCGGCCCTGCTTCTCTCCGTTGCTGTGCGCCGAGACGCACGCTCGC GTGTACGAGCGGGTGAATCGCTTTCTTGCCGGTGGCACGACGCCTGCAACGGCGCTGACG GGGCAGCAGCAGCGAGCGAACCTCGTCCAGTACGTCCGCTCCTCACCTCGCATCACTCGC AGCTTTACGCGATCGCTTCACCGAGCCAACATCAGCCACACCTCCGTGGCCCTGCTGCTG GCTGCGGTAGAGACGCAGCTGAAGGGCCGCAGTTTCGAGAGCGACATCCGCACCGTCTTC TTCGAGCCCGCTCAGAGCCACGGCACCGGCTACGGCGCACCAACGTTGTGGAAGGACCCG AACGAGCTCTTCTACCAACCCACAGGTCAGGCTCTGCAACACGAGACCTTCAAGCGGCCG GTGGCCATCGGCGACCCGCGCAACTGTGGTCCTGCGGTGTGGAACGGCTCGCTGAACCTC TACGCCCCTGTCGAGGACTACGGCAAGCTTCTGCTGCTCTCGCTCGACACCATCATGGAC GCCCGCGAGCTGCTCGGCAAGCCGGCTAACGCTAACGGGCGCCCCTACTACGATTTGGGG GTGCAGTACGTGCCATCCAAGGACCATCTGCAGCTGACCAAGCCAGTTTTCTACGGCATT GATGCCCTCCCTGCCGCCGCGTCCTTCCGCTACAGCTGCGAGCACGACCTCGGCTGCTTT GGCGTCGCCTCCTGCGGCAGCCGCGGCGCTCGCTTCTTTGTGAACAACCTCTCCCGCATC ATTCAGCACCTGTTCGTGAAGCACGTGTTGGCCAAAGGGCTCGACCCTGAGAAACCCGTC AACCTCGACGACCCCGCGCAGAGAGGCGAGGAGACGGAGGAGACGCTCCAGCGGACGATG AAGCGGCAGAAGTTGACGAACTACTTCACGAAGTACGAGGCGCACAGGCGCTACTGA
  • Download Fasta

  • Fasta :-

    MSGAPDAAAARPRLRIDFPPVKDKEELVKKQRAAVGQDEIREDMEKDIPPVIRSVLELSH LTMSGHSQWLRAAPGYQGGLFHKGKPFCFASGYRDTSRPLDAEDKGNHMKLKDPLVYGTL SLPVTAAYVCELHGKGIFNLETPLFQYLPELQCKLSEDVTARSVLSFTHGIDDAHLLKDA GARWHRPCFSPLLCAETHARVYERVNRFLAGGTTPATALTGQQQRANLVQYVRSSPRITR SFTRSLHRANISHTSVALLLAAVETQLKGRSFESDIRTVFFEPAQSHGTGYGAPTLWKDP NELFYQPTGQALQHETFKRPVAIGDPRNCGPAVWNGSLNLYAPVEDYGKLLLLSLDTIMD ARELLGKPANANGRPYYDLGVQYVPSKDHLQLTKPVFYGIDALPAAASFRYSCEHDLGCF GVASCGSRGARFFVNNLSRIIQHLFVKHVLAKGLDPEKPVNLDDPAQRGEETEETLQRTM KRQKLTNYFTKYEAHRRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.28.280096 TGYRDTSRPL0.994unspLmxM.28.2800235 SYVRSSPRIT0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India