LmxM.29.0270 | cysteine peptidase, Clan CA, family C54, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.29.0270OTHER0.9550320.0174440.027524
No Results

  • Fasta :-

    >LmxM.29.0270 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALADTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWN RRAFKAEYWSPSQGCEAIKRTMQGAVKTEQLQTRVMVVTSTNGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLNEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVEAQQTQRDCDQLGRARPGHTDGTFVSPLQRGDSCGIGGALISETAPLAHRRTLRVSR KRLKEGEVGTATAATAEGNDGEDVLDTDSWEYLD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/916 Sequence name : 916 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.054 CoefTot : -0.055 ChDiff : -8 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 1.724 0.133 0.563 MesoH : -0.366 0.347 -0.320 0.207 MuHd_075 : 18.028 6.958 3.859 2.504 MuHd_095 : 25.048 13.759 3.790 6.250 MuHd_100 : 24.693 15.341 4.983 6.064 MuHd_105 : 31.753 21.611 7.824 7.160 Hmax_075 : 11.783 9.800 0.183 5.355 Hmax_095 : 10.938 11.287 -0.555 5.189 Hmax_100 : 14.600 12.500 1.705 5.310 Hmax_105 : 18.400 14.900 1.572 5.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8075 0.1925 DFMC : 0.8955 0.1045
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 LmxM.29.0270 MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALADTFLIFTYRDGFEAIPAVTRLIETDQGWGCLLRTSQML 80 LAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWNRRAFKAEYWSPSQGCEAIKRTMQGAVKTEQLQTRVMVVTS 160 TNGCIYADEVQHTFKQGADVVLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH 240 QRTAAALLNEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRFMHVEAQQTQRDCDQLGRARP 320 GHTDGTFVSPLQRGDSCGIGGALISETAPLAHRRTLRVSRKRLKEGEVGTATAATAEGNDGEDVLDTDSWEYLD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.29.0270 3 ----MLR|YV 0.127 . LmxM.29.0270 26 PLQVVGR|SG 0.192 . LmxM.29.0270 34 GAAVESR|EE 0.080 . LmxM.29.0270 39 SREELEK|AL 0.071 . LmxM.29.0270 51 FLIFTYR|DG 0.117 . LmxM.29.0270 62 AIPAVTR|LI 0.093 . LmxM.29.0270 75 GWGCLLR|TS 0.084 . LmxM.29.0270 90 FLWVHGR|PA 0.148 . LmxM.29.0270 94 HGRPADR|KL 0.100 . LmxM.29.0270 95 GRPADRK|LS 0.076 . LmxM.29.0270 116 SIHNMIR|SV 0.251 . LmxM.29.0270 121 IRSVWNR|RA 0.242 . LmxM.29.0270 122 RSVWNRR|AF 0.159 . LmxM.29.0270 125 WNRRAFK|AE 0.139 . LmxM.29.0270 139 QGCEAIK|RT 0.066 . LmxM.29.0270 140 GCEAIKR|TM 0.177 . LmxM.29.0270 147 TMQGAVK|TE 0.058 . LmxM.29.0270 154 TEQLQTR|VM 0.079 . LmxM.29.0270 175 EVQHTFK|QG 0.067 . LmxM.29.0270 188 LVLASVR|VS 0.077 . LmxM.29.0270 205 SYLQIEK|LM 0.055 . LmxM.29.0270 222 VGGVPGR|SY 0.107 . LmxM.29.0270 242 YLDPHQR|TA 0.100 . LmxM.29.0270 266 PSVADVR|CV 0.132 . LmxM.29.0270 272 RCVHWSR|VD 0.074 . LmxM.29.0270 286 AFAVTTR|DE 0.117 . LmxM.29.0270 299 EVHLSNR|FM 0.121 . LmxM.29.0270 310 EAQQTQR|DC 0.139 . LmxM.29.0270 317 DCDQLGR|AR 0.072 . LmxM.29.0270 319 DQLGRAR|PG 0.079 . LmxM.29.0270 333 FVSPLQR|GD 0.124 . LmxM.29.0270 353 TAPLAHR|RT 0.066 . LmxM.29.0270 354 APLAHRR|TL 0.161 . LmxM.29.0270 357 AHRRTLR|VS 0.248 . LmxM.29.0270 360 RTLRVSR|KR 0.182 . LmxM.29.0270 361 TLRVSRK|RL 0.135 . LmxM.29.0270 362 LRVSRKR|LK 0.236 . LmxM.29.0270 364 VSRKRLK|EG 0.071 . ____________________________^_________________

  • Fasta :-

    >LmxM.29.0270 ATGCTCCGCTACGTGCAAGACTTATGGAGCGCCTTCTTCCCCACGGAGGCGGTCTTTCCA CTCCAAGTCGTCGGCAGGTCTGGCGCTGCCGTAGAATCGCGAGAGGAGTTAGAGAAGGCA CTCGCCGACACATTCCTCATCTTCACGTACCGGGACGGCTTCGAGGCGATCCCGGCCGTC ACGCGCCTGATCGAGACAGACCAGGGCTGGGGCTGCCTTCTGCGCACCTCGCAGATGCTG CTGGCTCATTTCTTGTGGGTTCACGGCCGTCCAGCGGATCGAAAACTTTCTCTCTTCTTC GACCACAGCGCCGAGACGGCGCCGTTCTCGATCCACAACATGATCCGAAGTGTATGGAAT CGGCGGGCGTTCAAGGCGGAGTACTGGAGCCCATCGCAGGGCTGCGAGGCCATCAAGCGG ACGATGCAGGGTGCCGTCAAGACGGAGCAGCTGCAGACGCGCGTGATGGTGGTGACATCC ACAAACGGGTGCATCTACGCCGATGAGGTGCAGCACACCTTCAAGCAGGGGGCGGATGTG GTGCTCGTCTTGGCCTCCGTGCGCGTGAGTGCTGCGGCACAGCTGACGCAGGAGAGCTAC CTCCAGATAGAGAAGCTTATGGAGCAGCCGCAGTGTCTGGGGGTTGTTGGCGGAGTACCG GGACGGAGCTACTACTTCTTTGCTCACAACCAAACACAGCTCTTCTACCTCGACCCGCAC CAGCGAACCGCTGCCGCGCTGCTGAATGAAGGGCCGTCCGCCGCGGTCTCTGTCACGCCA TCCGTCGCCGATGTGCGCTGTGTACATTGGTCACGCGTGGACACGTCGCTGTTTCTCGCC TTCGCCGTTACAACACGCGATGAGTGGGCCGCGCTGGAGGTGCATCTCTCTAACAGATTT ATGCACGTCGAAGCGCAGCAGACGCAGCGCGACTGCGATCAGCTCGGGCGTGCGCGACCG GGGCACACCGATGGCACCTTTGTGTCCCCGCTGCAGAGGGGCGATAGTTGTGGGATTGGC GGCGCGTTAATTTCCGAAACGGCCCCACTAGCACACCGACGTACGTTGCGGGTATCTCGA AAGAGGCTCAAGGAAGGTGAGGTAGGTACCGCCACCGCTGCTACAGCAGAGGGGAATGAT GGTGAGGACGTGCTCGACACGGACTCGTGGGAGTATCTGGATTGA
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  • Fasta :-

    MLRYVQDLWSAFFPTEAVFPLQVVGRSGAAVESREELEKALADTFLIFTYRDGFEAIPAV TRLIETDQGWGCLLRTSQMLLAHFLWVHGRPADRKLSLFFDHSAETAPFSIHNMIRSVWN RRAFKAEYWSPSQGCEAIKRTMQGAVKTEQLQTRVMVVTSTNGCIYADEVQHTFKQGADV VLVLASVRVSAAAQLTQESYLQIEKLMEQPQCLGVVGGVPGRSYYFFAHNQTQLFYLDPH QRTAAALLNEGPSAAVSVTPSVADVRCVHWSRVDTSLFLAFAVTTRDEWAALEVHLSNRF MHVEAQQTQRDCDQLGRARPGHTDGTFVSPLQRGDSCGIGGALISETAPLAHRRTLRVSR KRLKEGEVGTATAATAEGNDGEDVLDTDSWEYLD

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.29.027033 SAAVESREEL0.995unspLmxM.29.0270359 STLRVSRKRL0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India