LmxM.29.0400 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.29.0400OTHER0.9792630.0094460.011291
No Results

  • Fasta :-

    >LmxM.29.0400 MISARDAILHLTSGPSLMDGMCNFIIRPPRSTYEIDDLGPDVFRIGDDCTERFMRHDFEL ENMRGLRFQCSWFKPYPARRVPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSMGAVAAIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVRGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCERQDDIQRLIRAFLRL YLIDKPQGAREMQAVRELELANTASPAAVPVAAAATKAATSQPSAPGAPALKQLVPPTSY GMRCAGTALISSSPTSATASSSSTTSPSTSASSSTSFDSSLLSPASRLAYYCSNSRDSTS PLKTAATLASSPPPFFTSLRSSSGTRARVSASTATVADGGGAGEQRSYRPTAQLSLRRSH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/78 Sequence name : 78 Sequence length : 480 VALUES OF COMPUTED PARAMETERS Coef20 : 3.875 CoefTot : 0.388 ChDiff : 3 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.276 1.371 0.196 0.496 MesoH : 0.520 0.588 -0.102 0.288 MuHd_075 : 27.462 17.835 7.933 5.276 MuHd_095 : 14.076 4.333 3.772 2.282 MuHd_100 : 16.696 7.429 3.562 3.267 MuHd_105 : 17.884 12.060 3.721 4.102 Hmax_075 : 14.900 14.200 2.511 4.737 Hmax_095 : 12.900 11.400 1.694 4.320 Hmax_100 : 15.700 14.100 1.973 5.140 Hmax_105 : 16.900 15.300 2.560 5.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9297 0.0703 DFMC : 0.8898 0.1102
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 480 LmxM.29.0400 MISARDAILHLTSGPSLMDGMCNFIIRPPRSTYEIDDLGPDVFRIGDDCTERFMRHDFELENMRGLRFQCSWFKPYPARR 80 VPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGMSEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSM 160 GAVAAIMYASKDPWIRCIVCDSPFASLRLLIDDLVERHGGRTARVLPKILVRGIVERIRKRIMKRAAFDIDDLDAVKYAK 240 ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCERQDDIQRLIRAFLRLYLIDKPQGAREMQAVRELEL 320 ANTASPAAVPVAAAATKAATSQPSAPGAPALKQLVPPTSYGMRCAGTALISSSPTSATASSSSTTSPSTSASSSTSFDSS 400 LLSPASRLAYYCSNSRDSTSPLKTAATLASSPPPFFTSLRSSSGTRARVSASTATVADGGGAGEQRSYRPTAQLSLRRSH 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.29.0400 5 --MISAR|DA 0.176 . LmxM.29.0400 27 MCNFIIR|PP 0.080 . LmxM.29.0400 30 FIIRPPR|ST 0.451 . LmxM.29.0400 44 LGPDVFR|IG 0.085 . LmxM.29.0400 52 GDDCTER|FM 0.082 . LmxM.29.0400 55 CTERFMR|HD 0.291 . LmxM.29.0400 64 FELENMR|GL 0.082 . LmxM.29.0400 67 ENMRGLR|FQ 0.216 . LmxM.29.0400 74 FQCSWFK|PY 0.058 . LmxM.29.0400 79 FKPYPAR|RV 0.116 . LmxM.29.0400 80 KPYPARR|VP 0.133 . LmxM.29.0400 94 HANCGGR|YD 0.092 . LmxM.29.0400 105 EALFLLR|EG 0.063 . LmxM.29.0400 133 SLGFYER|QD 0.081 . LmxM.29.0400 146 VEFLTLK|SD 0.071 . LmxM.29.0400 158 GVALWGR|SM 0.210 . LmxM.29.0400 171 AIMYASK|DP 0.061 . LmxM.29.0400 176 SKDPWIR|CI 0.076 . LmxM.29.0400 188 SPFASLR|LL 0.100 . LmxM.29.0400 197 IDDLVER|HG 0.079 . LmxM.29.0400 201 VERHGGR|TA 0.092 . LmxM.29.0400 204 HGGRTAR|VL 0.357 . LmxM.29.0400 208 TARVLPK|IL 0.074 . LmxM.29.0400 212 LPKILVR|GI 0.089 . LmxM.29.0400 217 VRGIVER|IR 0.091 . LmxM.29.0400 219 GIVERIR|KR 0.077 . LmxM.29.0400 220 IVERIRK|RI 0.152 . LmxM.29.0400 221 VERIRKR|IM 0.147 . LmxM.29.0400 224 IRKRIMK|RA 0.159 . LmxM.29.0400 225 RKRIMKR|AA 0.340 . LmxM.29.0400 237 DDLDAVK|YA 0.062 . LmxM.29.0400 240 DAVKYAK|AC 0.064 . LmxM.29.0400 266 THCEMIR|DA 0.140 . LmxM.29.0400 286 GGHNCER|QD 0.110 . LmxM.29.0400 292 RQDDIQR|LI 0.081 . LmxM.29.0400 295 DIQRLIR|AF 0.137 . LmxM.29.0400 299 LIRAFLR|LY 0.081 . LmxM.29.0400 305 RLYLIDK|PQ 0.074 . LmxM.29.0400 310 DKPQGAR|EM 0.083 . LmxM.29.0400 316 REMQAVR|EL 0.091 . LmxM.29.0400 337 VAAAATK|AA 0.079 . LmxM.29.0400 352 PGAPALK|QL 0.057 . LmxM.29.0400 363 PTSYGMR|CA 0.190 . LmxM.29.0400 407 LLSPASR|LA 0.099 . LmxM.29.0400 416 YYCSNSR|DS 0.079 . LmxM.29.0400 423 DSTSPLK|TA 0.058 . LmxM.29.0400 440 PFFTSLR|SS 0.129 . LmxM.29.0400 446 RSSSGTR|AR 0.082 . LmxM.29.0400 448 SSGTRAR|VS 0.086 . LmxM.29.0400 466 GGAGEQR|SY 0.133 . LmxM.29.0400 469 GEQRSYR|PT 0.249 . LmxM.29.0400 477 TAQLSLR|RS 0.094 . LmxM.29.0400 478 AQLSLRR|SH 0.152 . ____________________________^_________________

  • Fasta :-

    >LmxM.29.0400 ATGATCAGCGCCAGGGACGCCATTCTCCACCTGACCTCAGGCCCGAGCCTGATGGACGGG ATGTGCAACTTCATTATTCGCCCGCCCCGGTCCACCTACGAGATCGACGACCTTGGGCCT GATGTGTTCCGCATCGGCGACGATTGCACGGAGCGCTTCATGCGCCACGATTTTGAGCTG GAGAACATGCGGGGTTTGCGCTTCCAGTGCTCGTGGTTCAAGCCCTATCCTGCCCGCCGT GTGCCGTGCGTGGTGTACTGCCACGCGAACTGCGGCGGGCGCTACGACGGCCTCGAGGCT CTCTTTCTGCTTCGGGAAGGCTTCAGCCTCTTCTGCTTCGACTTCTGCGGGAGCGGCATG TCGGAGGGTGAGTACATCTCCCTCGGCTTCTACGAGCGCCAGGACCTGGTCGCCGTCGTT GAGTTTCTCACGCTCAAGAGCGACGAGGTGGACGGGGTGGCGCTGTGGGGCCGCAGCATG GGCGCCGTGGCCGCCATCATGTACGCCTCGAAGGATCCGTGGATTCGCTGTATTGTTTGC GACTCACCCTTCGCATCTCTGCGGCTGCTCATCGACGATTTGGTGGAGCGGCACGGTGGG CGAACGGCCCGGGTCCTGCCGAAGATTTTGGTGCGCGGGATTGTGGAGCGCATCCGTAAG CGCATCATGAAGCGAGCCGCTTTTGACATCGACGACTTGGACGCGGTCAAGTACGCCAAG GCGTGCGGCGTGCCCGCGCTGCTGTTCCACGGCGCCGACGACGACTTTGTGTCCCCGACG CACTGCGAGATGATTCGCGACGCCTTCCCCATTCCGTGCTTGCAGCAGTTCACGCCAGGC GGGCACAACTGTGAACGCCAAGATGACATTCAGCGGCTCATTAGGGCCTTTCTGCGGCTC TACCTGATCGACAAGCCACAAGGAGCACGAGAGATGCAGGCAGTGCGTGAGCTCGAGCTG GCCAATACGGCTTCACCCGCTGCTGTGCCCGTGGCGGCAGCAGCAACCAAGGCGGCCACC TCGCAGCCCAGTGCGCCTGGTGCTCCAGCTCTGAAGCAGCTCGTACCCCCGACAAGTTAT GGTATGAGGTGCGCTGGGACGGCACTGATCTCTTCTTCCCCCACATCGGCGACTGCATCT TCTTCCTCCACCACCTCTCCATCCACATCCGCGTCGTCATCGACATCGTTCGACTCGTCC CTGCTGTCGCCAGCGAGCAGGTTGGCCTACTACTGCTCCAACTCACGTGATTCCACCTCG CCACTAAAGACAGCGGCGACGCTGGCCAGCTCACCCCCACCGTTCTTCACGTCTCTCCGC TCGTCCAGTGGAACACGAGCGCGCGTCAGCGCTTCCACGGCGACAGTGGCAGATGGGGGG GGGGCAGGCGAGCAGCGGAGTTACCGTCCCACCGCCCAGCTCTCCCTCCGCAGATCCCAC TGA
  • Download Fasta

  • Fasta :-

    MISARDAILHLTSGPSLMDGMCNFIIRPPRSTYEIDDLGPDVFRIGDDCTERFMRHDFEL ENMRGLRFQCSWFKPYPARRVPCVVYCHANCGGRYDGLEALFLLREGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAVVEFLTLKSDEVDGVALWGRSMGAVAAIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVRGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPALLFHGADDDFVSPTHCEMIRDAFPIPCLQQFTPGGHNCERQDDIQRLIRAFLRL YLIDKPQGAREMQAVRELELANTASPAAVPVAAAATKAATSQPSAPGAPALKQLVPPTSY GMRCAGTALISSSPTSATASSSSTTSPSTSASSSTSFDSSLLSPASRLAYYCSNSRDSTS PLKTAATLASSPPPFFTSLRSSSGTRARVSASTATVADGGGAGEQRSYRPTAQLSLRRSH

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.29.0400386 SSSTTSPSTS0.99unspLmxM.29.0400386 SSSTTSPSTS0.99unspLmxM.29.0400386 SSSTTSPSTS0.99unspLmxM.29.0400418 SNSRDSTSPL0.997unspLmxM.29.0400443 SLRSSSGTRA0.996unspLmxM.29.040031 SRPPRSTYEI0.997unspLmxM.29.0400125 YSEGEYISLG0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India