LmxM.30.0410 | cysteine peptidase, Clan CA, family C2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0410OTHER0.9999200.0000740.000007
No Results

  • Fasta :-

    >LmxM.30.0410 MSSAPDEFDETTIDPDSLPVPATWRQKTSVFRYCGPSVTGTVTSAIDEGVLYCIMTDGGA WAFYNDTRYYTVQVRYRIAAGSTVTPGHSVTVEGDGAQQELSMELGPEETRVLLTGRVVG LENLSKATLLSRRAATTQEDEALCAEPRQHWGVLATSCPDAALPDRRSVSATHLVARCVA RQIRFVDPHFFPSHASLYRHGQDSFYVPPLHWRLPASYLPADDSSCREVRLFRGPVRHPN GLRAGRLFPNHLLLSVAIGLTCLWPQALHRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWW WPCVLDEFFPASARCPEFSHCADDLRVLWLPLLEKACAKSLGSYAAMREAPLEHFVRALT GGPCTVLRDIWPAHEDLRDSTVKATSFFGLMKRLLRQRPTEIPSLVCWLQPYFRGTARTQ EIDDRLVVLYEDVGLDPNVSTVVLGLETLGDGQCVARLRQTAEKRRSAESWLDLWRRAGK SWVDEVSDLVFAMEETAGDTLWMALEDLPQYFQGGCMAPLTSDWGTVKVQAEFTQRQPSV VLEVTVTAPTRLLASVTQRDRDEVGWPTQAVKAGNPSMRASQTLAGLSCLLYSKGSGDRA QFCGSSGDTPDVFEVAQEPHFVYEREVTAGHLLDPRQGPYYVAAFLHSISPDVAYTITAQ LIAAESVSSAAPLAAPESSTATVRFMTAKPGAALFQDLSRPILLESSMEVSATAMNYQSY LPGQLRMHYGSGVTVDLVLGGSDVPPPMIAAGTK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/852 Sequence name : 852 Sequence length : 754 VALUES OF COMPUTED PARAMETERS Coef20 : 3.050 CoefTot : 0.112 ChDiff : -14 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.653 1.747 0.270 0.645 MesoH : 0.119 0.537 -0.203 0.277 MuHd_075 : 23.001 17.649 6.527 4.462 MuHd_095 : 23.691 8.660 5.029 3.126 MuHd_100 : 28.668 11.054 5.691 4.084 MuHd_105 : 31.647 12.574 6.133 4.555 Hmax_075 : 13.600 10.600 1.967 3.910 Hmax_095 : 1.700 1.800 -1.778 2.070 Hmax_100 : 13.700 7.300 0.836 3.580 Hmax_105 : -0.700 2.600 -2.844 1.870 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9702 0.0298 DFMC : 0.9179 0.0821
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 754 LmxM.30.0410 MSSAPDEFDETTIDPDSLPVPATWRQKTSVFRYCGPSVTGTVTSAIDEGVLYCIMTDGGAWAFYNDTRYYTVQVRYRIAA 80 GSTVTPGHSVTVEGDGAQQELSMELGPEETRVLLTGRVVGLENLSKATLLSRRAATTQEDEALCAEPRQHWGVLATSCPD 160 AALPDRRSVSATHLVARCVARQIRFVDPHFFPSHASLYRHGQDSFYVPPLHWRLPASYLPADDSSCREVRLFRGPVRHPN 240 GLRAGRLFPNHLLLSVAIGLTCLWPQALHRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWWWPCVLDEFFPASARCPEFSH 320 CADDLRVLWLPLLEKACAKSLGSYAAMREAPLEHFVRALTGGPCTVLRDIWPAHEDLRDSTVKATSFFGLMKRLLRQRPT 400 EIPSLVCWLQPYFRGTARTQEIDDRLVVLYEDVGLDPNVSTVVLGLETLGDGQCVARLRQTAEKRRSAESWLDLWRRAGK 480 SWVDEVSDLVFAMEETAGDTLWMALEDLPQYFQGGCMAPLTSDWGTVKVQAEFTQRQPSVVLEVTVTAPTRLLASVTQRD 560 RDEVGWPTQAVKAGNPSMRASQTLAGLSCLLYSKGSGDRAQFCGSSGDTPDVFEVAQEPHFVYEREVTAGHLLDPRQGPY 640 YVAAFLHSISPDVAYTITAQLIAAESVSSAAPLAAPESSTATVRFMTAKPGAALFQDLSRPILLESSMEVSATAMNYQSY 720 LPGQLRMHYGSGVTVDLVLGGSDVPPPMIAAGTK 800 ................................................................................ 80 ................................................................................ 160 .......................P........................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .................................. 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0410 25 PVPATWR|QK 0.079 . LmxM.30.0410 27 PATWRQK|TS 0.053 . LmxM.30.0410 32 QKTSVFR|YC 0.139 . LmxM.30.0410 68 AFYNDTR|YY 0.098 . LmxM.30.0410 75 YYTVQVR|YR 0.095 . LmxM.30.0410 77 TVQVRYR|IA 0.145 . LmxM.30.0410 111 LGPEETR|VL 0.072 . LmxM.30.0410 117 RVLLTGR|VV 0.103 . LmxM.30.0410 126 GLENLSK|AT 0.062 . LmxM.30.0410 132 KATLLSR|RA 0.081 . LmxM.30.0410 133 ATLLSRR|AA 0.228 . LmxM.30.0410 148 ALCAEPR|QH 0.109 . LmxM.30.0410 166 DAALPDR|RS 0.074 . LmxM.30.0410 167 AALPDRR|SV 0.322 . LmxM.30.0410 177 ATHLVAR|CV 0.188 . LmxM.30.0410 181 VARCVAR|QI 0.150 . LmxM.30.0410 184 CVARQIR|FV 0.623 *ProP* LmxM.30.0410 199 SHASLYR|HG 0.097 . LmxM.30.0410 213 VPPLHWR|LP 0.080 . LmxM.30.0410 227 ADDSSCR|EV 0.091 . LmxM.30.0410 230 SSCREVR|LF 0.233 . LmxM.30.0410 233 REVRLFR|GP 0.195 . LmxM.30.0410 237 LFRGPVR|HP 0.087 . LmxM.30.0410 243 RHPNGLR|AG 0.071 . LmxM.30.0410 246 NGLRAGR|LF 0.143 . LmxM.30.0410 270 WPQALHR|LF 0.093 . LmxM.30.0410 282 QGAQEGK|RD 0.070 . LmxM.30.0410 283 GAQEGKR|DR 0.203 . LmxM.30.0410 285 QEGKRDR|AV 0.190 . LmxM.30.0410 293 VGAYHVR|LC 0.092 . LmxM.30.0410 314 FFPASAR|CP 0.076 . LmxM.30.0410 326 HCADDLR|VL 0.072 . LmxM.30.0410 335 WLPLLEK|AC 0.062 . LmxM.30.0410 339 LEKACAK|SL 0.105 . LmxM.30.0410 348 GSYAAMR|EA 0.090 . LmxM.30.0410 357 PLEHFVR|AL 0.128 . LmxM.30.0410 368 GPCTVLR|DI 0.159 . LmxM.30.0410 378 PAHEDLR|DS 0.111 . LmxM.30.0410 383 LRDSTVK|AT 0.079 . LmxM.30.0410 392 SFFGLMK|RL 0.068 . LmxM.30.0410 393 FFGLMKR|LL 0.133 . LmxM.30.0410 396 LMKRLLR|QR 0.194 . LmxM.30.0410 398 KRLLRQR|PT 0.081 . LmxM.30.0410 414 WLQPYFR|GT 0.090 . LmxM.30.0410 418 YFRGTAR|TQ 0.088 . LmxM.30.0410 425 TQEIDDR|LV 0.110 . LmxM.30.0410 457 DGQCVAR|LR 0.094 . LmxM.30.0410 459 QCVARLR|QT 0.102 . LmxM.30.0410 464 LRQTAEK|RR 0.064 . LmxM.30.0410 465 RQTAEKR|RS 0.127 . LmxM.30.0410 466 QTAEKRR|SA 0.404 . LmxM.30.0410 476 SWLDLWR|RA 0.107 . LmxM.30.0410 477 WLDLWRR|AG 0.109 . LmxM.30.0410 480 LWRRAGK|SW 0.275 . LmxM.30.0410 528 SDWGTVK|VQ 0.055 . LmxM.30.0410 536 QAEFTQR|QP 0.099 . LmxM.30.0410 551 TVTAPTR|LL 0.078 . LmxM.30.0410 559 LASVTQR|DR 0.164 . LmxM.30.0410 561 SVTQRDR|DE 0.080 . LmxM.30.0410 572 WPTQAVK|AG 0.067 . LmxM.30.0410 579 AGNPSMR|AS 0.108 . LmxM.30.0410 594 SCLLYSK|GS 0.060 . LmxM.30.0410 599 SKGSGDR|AQ 0.082 . LmxM.30.0410 625 PHFVYER|EV 0.114 . LmxM.30.0410 636 GHLLDPR|QG 0.070 . LmxM.30.0410 684 SSTATVR|FM 0.110 . LmxM.30.0410 689 VRFMTAK|PG 0.073 . LmxM.30.0410 700 LFQDLSR|PI 0.078 . LmxM.30.0410 726 YLPGQLR|MH 0.094 . LmxM.30.0410 754 MIAAGTK|-- 0.070 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0410 ATGTCATCAGCTCCGGACGAGTTCGACGAGACCACTATAGACCCCGACTCTCTACCGGTG CCTGCGACATGGAGGCAGAAGACCTCCGTCTTCCGGTACTGTGGACCTTCTGTGACGGGC ACAGTCACCTCCGCGATTGATGAGGGGGTGCTGTACTGCATCATGACGGACGGGGGCGCC TGGGCCTTCTACAACGACACTCGATACTACACGGTGCAGGTGAGATACCGCATCGCGGCC GGATCGACGGTGACGCCAGGGCACTCTGTAACGGTAGAGGGCGATGGGGCGCAGCAGGAG CTGTCGATGGAACTGGGGCCTGAGGAGACGAGGGTGTTGCTCACGGGCAGAGTGGTGGGC TTGGAGAACCTCTCCAAGGCAACACTCCTGTCGAGGCGTGCAGCGACGACCCAAGAGGAT GAGGCACTGTGCGCGGAGCCGCGGCAGCACTGGGGCGTTCTTGCCACCTCGTGCCCGGAT GCCGCGTTGCCGGATCGCCGTAGCGTGTCAGCGACGCACCTCGTCGCCCGATGCGTGGCG CGGCAGATTCGGTTTGTCGACCCGCATTTCTTCCCAAGCCACGCCTCCCTCTACCGCCAC GGCCAGGACAGCTTTTATGTGCCTCCTCTGCACTGGCGCCTGCCTGCGAGTTACCTCCCC GCCGATGACAGCTCCTGTCGCGAGGTGCGTCTCTTCCGCGGCCCCGTCCGTCACCCCAAC GGTTTGCGTGCGGGACGCCTGTTCCCTAACCACCTACTCCTCTCTGTTGCAATCGGGCTT ACGTGCCTCTGGCCCCAGGCGCTGCACCGCCTCTTCATTCATCCGCAGGGGGCCCAGGAG GGCAAGCGCGACCGAGCTGTCGGGGCCTATCACGTGAGGCTGTGCACAGGGGGCTGGTGG TGGCCCTGTGTCTTGGACGAGTTCTTTCCTGCGTCTGCACGATGCCCCGAGTTCAGCCAC TGTGCTGACGACCTGCGGGTGCTGTGGCTGCCTCTGCTAGAGAAGGCGTGCGCAAAGTCG CTCGGCTCCTACGCTGCAATGCGGGAGGCCCCTCTGGAGCACTTTGTCCGCGCGCTCACC GGAGGGCCTTGCACGGTGCTGCGCGACATCTGGCCAGCACACGAGGACTTGCGTGACTCC ACCGTCAAGGCAACTAGTTTCTTCGGGCTCATGAAGAGGCTGCTGCGGCAACGACCGACG GAGATCCCGAGCTTGGTGTGCTGGCTGCAACCCTACTTTCGCGGCACCGCCCGCACACAG GAGATAGACGATCGGCTGGTGGTGCTGTACGAGGATGTCGGACTCGACCCTAACGTCTCC ACTGTGGTGCTGGGGCTTGAGACGCTCGGCGATGGGCAGTGCGTCGCGCGTCTGCGTCAG ACGGCTGAGAAGAGGAGGTCGGCGGAGTCGTGGCTTGACCTTTGGCGCCGCGCCGGAAAG TCGTGGGTCGACGAGGTGAGCGATCTGGTGTTCGCCATGGAGGAGACGGCGGGGGACACG TTGTGGATGGCGCTGGAGGACTTACCGCAGTACTTCCAAGGCGGCTGTATGGCACCACTG ACGAGCGACTGGGGGACGGTGAAGGTGCAGGCTGAGTTTACGCAGCGCCAGCCGTCTGTG GTGCTGGAAGTGACAGTGACGGCACCAACGCGCCTCTTGGCGAGCGTTACGCAGAGGGAC CGCGATGAGGTCGGTTGGCCGACGCAGGCAGTGAAGGCTGGTAATCCCTCAATGCGTGCA AGTCAAACATTAGCGGGGCTGAGCTGCCTGCTGTACTCCAAGGGCAGCGGCGACAGAGCT CAGTTTTGTGGCAGCAGCGGCGACACCCCTGATGTTTTTGAGGTTGCTCAAGAGCCGCAT TTTGTGTATGAGCGTGAGGTGACCGCCGGGCATCTGCTAGACCCGCGACAGGGCCCCTAC TATGTTGCGGCGTTTCTGCACTCCATTTCGCCCGATGTGGCGTACACCATAACAGCCCAA CTAATCGCGGCAGAATCGGTGTCTTCTGCGGCGCCACTGGCAGCTCCGGAAAGCAGCACG GCAACCGTGCGCTTCATGACGGCGAAACCAGGGGCCGCTCTCTTTCAGGATCTCAGTCGG CCGATCCTCCTCGAGTCCTCGATGGAGGTGAGCGCGACAGCCATGAACTACCAAAGTTAC CTACCAGGGCAACTGCGCATGCACTACGGCTCGGGAGTGACTGTCGATCTTGTGCTTGGC GGCAGCGATGTGCCACCGCCAATGATAGCGGCAGGCACCAAGTGA
  • Download Fasta

  • Fasta :-

    MSSAPDEFDETTIDPDSLPVPATWRQKTSVFRYCGPSVTGTVTSAIDEGVLYCIMTDGGA WAFYNDTRYYTVQVRYRIAAGSTVTPGHSVTVEGDGAQQELSMELGPEETRVLLTGRVVG LENLSKATLLSRRAATTQEDEALCAEPRQHWGVLATSCPDAALPDRRSVSATHLVARCVA RQIRFVDPHFFPSHASLYRHGQDSFYVPPLHWRLPASYLPADDSSCREVRLFRGPVRHPN GLRAGRLFPNHLLLSVAIGLTCLWPQALHRLFIHPQGAQEGKRDRAVGAYHVRLCTGGWW WPCVLDEFFPASARCPEFSHCADDLRVLWLPLLEKACAKSLGSYAAMREAPLEHFVRALT GGPCTVLRDIWPAHEDLRDSTVKATSFFGLMKRLLRQRPTEIPSLVCWLQPYFRGTARTQ EIDDRLVVLYEDVGLDPNVSTVVLGLETLGDGQCVARLRQTAEKRRSAESWLDLWRRAGK SWVDEVSDLVFAMEETAGDTLWMALEDLPQYFQGGCMAPLTSDWGTVKVQAEFTQRQPSV VLEVTVTAPTRLLASVTQRDRDEVGWPTQAVKAGNPSMRASQTLAGLSCLLYSKGSGDRA QFCGSSGDTPDVFEVAQEPHFVYEREVTAGHLLDPRQGPYYVAAFLHSISPDVAYTITAQ LIAAESVSSAAPLAAPESSTATVRFMTAKPGAALFQDLSRPILLESSMEVSATAMNYQSY LPGQLRMHYGSGVTVDLVLGGSDVPPPMIAAGTK

    No Results
  • title: catalytic site
  • coordinates: H251,V439,Q460
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0410481 SRAGKSWVDE0.997unspLmxM.30.0410481 SRAGKSWVDE0.997unspLmxM.30.0410481 SRAGKSWVDE0.997unspLmxM.30.0410467 SEKRRSAESW0.996unspLmxM.30.0410470 SRSAESWLDL0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India