LmxM.30.0430 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0430OTHER0.9999920.0000080.000000
No Results

  • Fasta :-

    >LmxM.30.0430 MPMDGSAIHPICDEDFVTDAMLEEFLRPPSSFTLSDTTCDMLTASTLGSAARGPTPCIPA AVCTSALGIVPSSSFKTSHGSEGHHIGVEGSEGRVVHCASHLVSTSAALPVELSHSDITS DDSGDFAFLTSDVRDANAYDVIRHYILYCKQQEQELEDLEAECAQLEAEQQHLYGAAIAA EMTRISSHMSAANALSPPNSNEIAATGASGVPSSAAVDEFGEAHIDPLKFCPYMDPHGAA HSLQPYRYGQPAINGFYTPAFKNGILYRCVAANGSWIFYNDSEQYRMHVKYIFGASSVIT AGPHASVTQRASGEYEVQVAVWPQETEVLLVGHVNGFKNLSSAVLVNSSYTNPRARASTA SARTLLKRFVNQAGKPNVSLLTKEDVLECCTGQCSELAAGLGPLTGQHFVDPDFPPCGTS LYRKGVDDVFLWDMSWRRPCEYLPATQRSEARLFARSVLPTDPCAGEGGDLYLCSAACCL AEHPTQVVRIFRHPVSADAGSRERAVGAYRVALSHGGWWTSTVLDSYLPASLKGPNLGRC SHDLRKLWYPLLEKAYAKLHGSYAAIQCGSLLEALQDLTGFPAFHFYDEWSDAVRSSAGA RASECTAYSPLSEHLSTSLEEKVHQRGYVVCLSLPDDGPAEAQSAQMGMVLGMSYKVLRL VRCGRFRLLQIRCPTLKVCGSGLWCSGSARWQQEPQLARLCGMDGDGGPALARLWLDWSE ALAMFEGGGVCCSRWDWAHDCRVRGFFKDGIPSFVLEVSVDASVDSASPVEAYCILSQED DRGMAPDHPNRALRPLMLSVSSHRGDHEAGEGVGGESSADQLIRHVCTTDPDTPTEHLNY VLGRDTALRVTLQPSQHPYYVIPRSKGDMNNKLFTLGFVSSTAVTKTGKLRMRAVQLPSN SPVFHNRRSFSTRQLESVAAVAFQIRGPDGGIRVGCGSSIG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/929 Sequence name : 929 Sequence length : 941 VALUES OF COMPUTED PARAMETERS Coef20 : 3.047 CoefTot : -0.253 ChDiff : -24 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.565 1.465 0.426 0.535 MesoH : 0.180 0.373 -0.139 0.231 MuHd_075 : 35.128 24.623 10.846 6.016 MuHd_095 : 5.167 11.045 3.577 2.052 MuHd_100 : 6.791 6.900 2.682 1.310 MuHd_105 : 6.419 5.779 2.222 1.078 Hmax_075 : 16.200 16.100 3.877 5.370 Hmax_095 : 3.150 9.200 -0.164 3.334 Hmax_100 : 10.000 6.600 0.860 3.730 Hmax_105 : 4.783 5.000 -0.427 2.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9884 0.0116 DFMC : 0.9779 0.0221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 941 LmxM.30.0430 MPMDGSAIHPICDEDFVTDAMLEEFLRPPSSFTLSDTTCDMLTASTLGSAARGPTPCIPAAVCTSALGIVPSSSFKTSHG 80 SEGHHIGVEGSEGRVVHCASHLVSTSAALPVELSHSDITSDDSGDFAFLTSDVRDANAYDVIRHYILYCKQQEQELEDLE 160 AECAQLEAEQQHLYGAAIAAEMTRISSHMSAANALSPPNSNEIAATGASGVPSSAAVDEFGEAHIDPLKFCPYMDPHGAA 240 HSLQPYRYGQPAINGFYTPAFKNGILYRCVAANGSWIFYNDSEQYRMHVKYIFGASSVITAGPHASVTQRASGEYEVQVA 320 VWPQETEVLLVGHVNGFKNLSSAVLVNSSYTNPRARASTASARTLLKRFVNQAGKPNVSLLTKEDVLECCTGQCSELAAG 400 LGPLTGQHFVDPDFPPCGTSLYRKGVDDVFLWDMSWRRPCEYLPATQRSEARLFARSVLPTDPCAGEGGDLYLCSAACCL 480 AEHPTQVVRIFRHPVSADAGSRERAVGAYRVALSHGGWWTSTVLDSYLPASLKGPNLGRCSHDLRKLWYPLLEKAYAKLH 560 GSYAAIQCGSLLEALQDLTGFPAFHFYDEWSDAVRSSAGARASECTAYSPLSEHLSTSLEEKVHQRGYVVCLSLPDDGPA 640 EAQSAQMGMVLGMSYKVLRLVRCGRFRLLQIRCPTLKVCGSGLWCSGSARWQQEPQLARLCGMDGDGGPALARLWLDWSE 720 ALAMFEGGGVCCSRWDWAHDCRVRGFFKDGIPSFVLEVSVDASVDSASPVEAYCILSQEDDRGMAPDHPNRALRPLMLSV 800 SSHRGDHEAGEGVGGESSADQLIRHVCTTDPDTPTEHLNYVLGRDTALRVTLQPSQHPYYVIPRSKGDMNNKLFTLGFVS 880 STAVTKTGKLRMRAVQLPSNSPVFHNRRSFSTRQLESVAAVAFQIRGPDGGIRVGCGSSIG 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ............................................................. 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0430 27 MLEEFLR|PP 0.074 . LmxM.30.0430 52 TLGSAAR|GP 0.126 . LmxM.30.0430 76 VPSSSFK|TS 0.098 . LmxM.30.0430 94 VEGSEGR|VV 0.108 . LmxM.30.0430 134 FLTSDVR|DA 0.086 . LmxM.30.0430 143 NAYDVIR|HY 0.084 . LmxM.30.0430 150 HYILYCK|QQ 0.068 . LmxM.30.0430 184 IAAEMTR|IS 0.089 . LmxM.30.0430 229 AHIDPLK|FC 0.060 . LmxM.30.0430 247 HSLQPYR|YG 0.122 . LmxM.30.0430 262 FYTPAFK|NG 0.051 . LmxM.30.0430 268 KNGILYR|CV 0.183 . LmxM.30.0430 286 NDSEQYR|MH 0.116 . LmxM.30.0430 290 QYRMHVK|YI 0.078 . LmxM.30.0430 310 HASVTQR|AS 0.215 . LmxM.30.0430 338 GHVNGFK|NL 0.062 . LmxM.30.0430 354 SSYTNPR|AR 0.080 . LmxM.30.0430 356 YTNPRAR|AS 0.144 . LmxM.30.0430 363 ASTASAR|TL 0.089 . LmxM.30.0430 367 SARTLLK|RF 0.056 . LmxM.30.0430 368 ARTLLKR|FV 0.377 . LmxM.30.0430 375 FVNQAGK|PN 0.059 . LmxM.30.0430 383 NVSLLTK|ED 0.058 . LmxM.30.0430 423 CGTSLYR|KG 0.067 . LmxM.30.0430 424 GTSLYRK|GV 0.236 . LmxM.30.0430 437 LWDMSWR|RP 0.093 . LmxM.30.0430 438 WDMSWRR|PC 0.136 . LmxM.30.0430 448 YLPATQR|SE 0.086 . LmxM.30.0430 452 TQRSEAR|LF 0.093 . LmxM.30.0430 456 EARLFAR|SV 0.233 . LmxM.30.0430 489 HPTQVVR|IF 0.083 . LmxM.30.0430 492 QVVRIFR|HP 0.179 . LmxM.30.0430 502 SADAGSR|ER 0.068 . LmxM.30.0430 504 DAGSRER|AV 0.158 . LmxM.30.0430 510 RAVGAYR|VA 0.085 . LmxM.30.0430 533 YLPASLK|GP 0.060 . LmxM.30.0430 539 KGPNLGR|CS 0.089 . LmxM.30.0430 545 RCSHDLR|KL 0.091 . LmxM.30.0430 546 CSHDLRK|LW 0.085 . LmxM.30.0430 554 WYPLLEK|AY 0.053 . LmxM.30.0430 558 LEKAYAK|LH 0.065 . LmxM.30.0430 595 EWSDAVR|SS 0.159 . LmxM.30.0430 601 RSSAGAR|AS 0.126 . LmxM.30.0430 622 STSLEEK|VH 0.064 . LmxM.30.0430 626 EEKVHQR|GY 0.100 . LmxM.30.0430 656 VLGMSYK|VL 0.065 . LmxM.30.0430 659 MSYKVLR|LV 0.158 . LmxM.30.0430 662 KVLRLVR|CG 0.140 . LmxM.30.0430 665 RLVRCGR|FR 0.201 . LmxM.30.0430 667 VRCGRFR|LL 0.097 . LmxM.30.0430 672 FRLLQIR|CP 0.078 . LmxM.30.0430 677 IRCPTLK|VC 0.078 . LmxM.30.0430 690 WCSGSAR|WQ 0.101 . LmxM.30.0430 699 QEPQLAR|LC 0.095 . LmxM.30.0430 713 GGPALAR|LW 0.076 . LmxM.30.0430 734 GGVCCSR|WD 0.088 . LmxM.30.0430 742 DWAHDCR|VR 0.084 . LmxM.30.0430 744 AHDCRVR|GF 0.085 . LmxM.30.0430 748 RVRGFFK|DG 0.078 . LmxM.30.0430 782 LSQEDDR|GM 0.082 . LmxM.30.0430 791 APDHPNR|AL 0.100 . LmxM.30.0430 794 HPNRALR|PL 0.348 . LmxM.30.0430 804 LSVSSHR|GD 0.112 . LmxM.30.0430 824 SADQLIR|HV 0.146 . LmxM.30.0430 844 LNYVLGR|DT 0.113 . LmxM.30.0430 849 GRDTALR|VT 0.076 . LmxM.30.0430 864 PYYVIPR|SK 0.154 . LmxM.30.0430 866 YVIPRSK|GD 0.058 . LmxM.30.0430 872 KGDMNNK|LF 0.061 . LmxM.30.0430 886 SSTAVTK|TG 0.058 . LmxM.30.0430 889 AVTKTGK|LR 0.057 . LmxM.30.0430 891 TKTGKLR|MR 0.110 . LmxM.30.0430 893 TGKLRMR|AV 0.108 . LmxM.30.0430 907 SPVFHNR|RS 0.100 . LmxM.30.0430 908 PVFHNRR|SF 0.208 . LmxM.30.0430 913 RRSFSTR|QL 0.208 . LmxM.30.0430 926 AVAFQIR|GP 0.121 . LmxM.30.0430 933 GPDGGIR|VG 0.072 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0430 ATGCCAATGGACGGCAGCGCCATCCACCCCATTTGCGATGAGGACTTCGTCACTGATGCC ATGCTGGAGGAGTTCCTGCGGCCTCCGTCATCGTTCACCTTGTCGGACACCACGTGCGAT ATGCTGACTGCCTCTACCCTTGGCAGCGCGGCGCGAGGACCGACTCCCTGCATCCCTGCA GCAGTCTGCACGTCCGCGTTGGGGATTGTCCCCTCGTCAAGCTTTAAAACCTCACACGGT AGCGAGGGGCACCACATTGGCGTGGAGGGCTCCGAGGGACGTGTTGTGCACTGTGCAAGC CATCTCGTCAGCACCAGCGCTGCACTGCCGGTGGAACTGTCGCACTCGGATATCACGAGC GACGACAGCGGCGACTTTGCTTTTCTCACGAGCGATGTGCGCGATGCCAACGCGTACGAC GTCATTCGCCACTATATCCTGTATTGCAAGCAGCAGGAGCAGGAGCTGGAGGATCTGGAG GCGGAATGCGCCCAGCTGGAGGCGGAGCAGCAGCACCTCTACGGCGCCGCCATAGCGGCG GAAATGACGCGAATATCATCGCACATGTCGGCTGCCAACGCTCTGTCGCCACCGAACTCG AACGAAATTGCGGCAACAGGAGCCAGCGGCGTTCCCTCGTCAGCCGCGGTCGACGAGTTC GGCGAGGCTCACATCGACCCGCTGAAGTTTTGCCCCTACATGGATCCACACGGCGCCGCT CACAGCCTGCAGCCGTATCGCTACGGACAGCCCGCCATCAATGGCTTCTACACCCCGGCC TTCAAGAATGGCATTCTCTACCGCTGCGTTGCCGCCAACGGGTCGTGGATATTCTACAAC GACTCGGAGCAGTACAGAATGCACGTGAAGTATATCTTCGGCGCCTCATCCGTCATCACG GCCGGTCCGCACGCGTCGGTGACCCAGCGGGCGTCGGGCGAGTATGAGGTGCAAGTGGCA GTTTGGCCACAGGAGACGGAGGTGCTACTTGTAGGCCACGTGAACGGCTTCAAGAATCTC TCCTCCGCCGTGCTGGTGAACTCCAGCTATACGAATCCACGCGCTCGTGCCTCCACCGCA TCTGCGCGCACTCTGCTGAAGCGCTTCGTCAACCAGGCAGGAAAGCCGAATGTCTCGCTG CTCACCAAGGAGGACGTGCTGGAGTGTTGTACGGGCCAGTGCAGCGAGTTGGCGGCCGGT CTCGGCCCTTTGACTGGGCAACATTTTGTCGACCCCGACTTTCCGCCCTGTGGCACATCG CTTTACCGCAAAGGTGTCGATGACGTCTTCCTTTGGGATATGTCCTGGCGGCGCCCCTGC GAGTACCTGCCCGCCACACAGCGCTCTGAGGCGCGCCTCTTCGCTCGCTCGGTGCTGCCG ACGGATCCGTGTGCGGGGGAAGGCGGTGACCTGTACCTGTGCAGTGCTGCCTGCTGTCTC GCTGAGCACCCTACGCAGGTCGTTCGAATTTTTCGGCACCCCGTCTCTGCGGATGCCGGC AGCCGCGAGCGCGCCGTCGGGGCGTACCGCGTCGCACTGAGCCACGGCGGCTGGTGGACG TCCACCGTCCTTGACAGTTACTTGCCAGCATCGCTCAAGGGCCCAAACCTGGGTCGCTGC TCGCACGACTTGCGCAAGCTCTGGTACCCGCTGCTTGAAAAGGCGTACGCGAAGCTGCAC GGCTCCTACGCTGCCATCCAGTGCGGTAGCCTGCTCGAGGCGCTGCAGGATCTCACCGGA TTTCCGGCGTTTCACTTCTATGATGAGTGGTCGGACGCGGTGCGGAGCAGCGCCGGTGCC CGCGCGAGCGAATGTACCGCCTACAGCCCACTGTCCGAACACCTGTCCACCTCTCTGGAG GAGAAAGTGCATCAACGCGGCTACGTCGTGTGCCTGAGCCTGCCAGACGACGGGCCGGCC GAGGCCCAGTCAGCGCAAATGGGCATGGTGCTCGGCATGTCGTACAAGGTGCTGCGACTC GTTCGCTGCGGCCGCTTTCGGCTTCTTCAGATTCGGTGCCCCACCTTGAAGGTCTGTGGC AGCGGGCTGTGGTGTTCCGGGAGCGCGCGGTGGCAGCAGGAGCCGCAGCTGGCCCGTTTG TGCGGGATGGATGGTGATGGCGGGCCGGCGCTCGCGAGGTTGTGGTTGGACTGGTCTGAG GCTCTAGCGATGTTCGAAGGGGGCGGCGTGTGCTGTAGTCGTTGGGACTGGGCACATGAC TGCCGTGTGCGAGGGTTCTTCAAAGATGGGATACCCTCTTTCGTCTTGGAGGTCAGCGTC GACGCCTCTGTAGACAGCGCGAGTCCCGTGGAAGCGTACTGCATCTTGTCCCAGGAGGAT GATCGCGGTATGGCTCCAGATCACCCGAACCGAGCGCTGCGCCCACTGATGCTGTCTGTC AGCAGCCATCGCGGCGACCATGAGGCGGGCGAGGGTGTCGGTGGGGAGTCGTCGGCTGAT CAGCTCATTCGGCATGTGTGCACCACGGACCCCGATACCCCCACAGAGCACCTGAACTAC GTCCTAGGTCGCGATACGGCGCTCCGTGTCACCTTGCAGCCTTCCCAACATCCGTACTAT GTTATTCCTCGCTCGAAGGGGGACATGAACAACAAGCTCTTCACACTCGGCTTTGTCTCC TCCACCGCGGTAACAAAGACGGGCAAGCTACGGATGCGGGCGGTGCAGCTTCCGTCCAAC TCTCCGGTGTTTCACAACCGACGCAGCTTCTCGACGCGGCAGCTCGAGAGCGTGGCAGCG GTGGCGTTTCAGATTCGAGGACCGGACGGGGGTATACGCGTAGGGTGCGGCAGCAGCATT GGCTGA
  • Download Fasta

  • Fasta :-

    MPMDGSAIHPICDEDFVTDAMLEEFLRPPSSFTLSDTTCDMLTASTLGSAARGPTPCIPA AVCTSALGIVPSSSFKTSHGSEGHHIGVEGSEGRVVHCASHLVSTSAALPVELSHSDITS DDSGDFAFLTSDVRDANAYDVIRHYILYCKQQEQELEDLEAECAQLEAEQQHLYGAAIAA EMTRISSHMSAANALSPPNSNEIAATGASGVPSSAAVDEFGEAHIDPLKFCPYMDPHGAA HSLQPYRYGQPAINGFYTPAFKNGILYRCVAANGSWIFYNDSEQYRMHVKYIFGASSVIT AGPHASVTQRASGEYEVQVAVWPQETEVLLVGHVNGFKNLSSAVLVNSSYTNPRARASTA SARTLLKRFVNQAGKPNVSLLTKEDVLECCTGQCSELAAGLGPLTGQHFVDPDFPPCGTS LYRKGVDDVFLWDMSWRRPCEYLPATQRSEARLFARSVLPTDPCAGEGGDLYLCSAACCL AEHPTQVVRIFRHPVSADAGSRERAVGAYRVALSHGGWWTSTVLDSYLPASLKGPNLGRC SHDLRKLWYPLLEKAYAKLHGSYAAIQCGSLLEALQDLTGFPAFHFYDEWSDAVRSSAGA RASECTAYSPLSEHLSTSLEEKVHQRGYVVCLSLPDDGPAEAQSAQMGMVLGMSYKVLRL VRCGRFRLLQIRCPTLKVCGSGLWCSGSARWQQEPQLARLCGMDGDGGPALARLWLDWSE ALAMFEGGGVCCSRWDWAHDCRVRGFFKDGIPSFVLEVSVDASVDSASPVEAYCILSQED DRGMAPDHPNRALRPLMLSVSSHRGDHEAGEGVGGESSADQLIRHVCTTDPDTPTEHLNY VLGRDTALRVTLQPSQHPYYVIPRSKGDMNNKLFTLGFVSSTAVTKTGKLRMRAVQLPSN SPVFHNRRSFSTRQLESVAAVAFQIRGPDGGIRVGCGSSIG

  • title: catalytic site
  • coordinates: L471,M653,C673
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0430768 SVDSASPVEA0.996unspLmxM.30.0430768 SVDSASPVEA0.996unspLmxM.30.0430768 SVDSASPVEA0.996unspLmxM.30.0430777 SYCILSQEDD0.995unspLmxM.30.0430911 SRRSFSTRQL0.993unspLmxM.30.0430501 SADAGSRERA0.994unspLmxM.30.0430618 SHLSTSLEEK0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India