LmxM.30.0440 | cytoskeleton-associated protein CAP5.5, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0440OTHER0.9999690.0000080.000023
No Results

  • Fasta :-

    >LmxM.30.0440 MGCCNSKETKQPKAVEERQPKAPSAKAISDTVSAEEEPKIEFRVASAVEDLRTERISAIC AHSRACPFRYNACAVVGGEVKSYFNGGIIFSVVKEGSWYLYNDSLDYEGHVDLRCGPGSS VTAGQRTKLEEVEDGWACAHAIVYPLETLHLVSGTINGYKTNITIKPLNAEYRHEACAAA NGTAEAETEAVRSLVTEDMDEEAILHRCMETKTPYVDLRFPPNGEAVARAGRDTRTIPEV AMMRPTQYLSDNIRLSVNDICGPVVALSIEPGNLGDSWFMCAVAIMAENEAMVRSIFAQG SPEEKAVGAYRVLISKNGWWHILILDDYLPTFNRMPVFARSYDDPAEVWASLLQKAYAKV HGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADARKADTLANALVQLSRSGACVVL STPGHNSESYLGGRQARDSGAFRARYEDAGLHPGYTYSLERVVIVEECGTLLFKVRNPWR SSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWMCWSDAIQYFDGGGVLFSIPDA TDYRVKGVFCKTIPSTVLEITASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKED GDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEETYLLVPRIHPKGVKSNYDRPY VIGIISAEKLEGNVQVEAKQIHSDSAVFTNYIAYKSEELPSVEAENQVRLPGMAPVTYVS TKVI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/832 Sequence name : 832 Sequence length : 724 VALUES OF COMPUTED PARAMETERS Coef20 : 3.105 CoefTot : -0.385 ChDiff : -25 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.947 1.347 0.063 0.509 MesoH : -0.376 0.472 -0.311 0.285 MuHd_075 : 23.209 11.841 5.114 3.556 MuHd_095 : 11.449 9.870 4.983 3.178 MuHd_100 : 14.314 8.289 3.306 3.518 MuHd_105 : 14.984 4.857 2.523 3.141 Hmax_075 : -5.600 0.467 -2.652 0.035 Hmax_095 : -12.700 -0.900 -2.959 -0.110 Hmax_100 : -9.300 -0.900 -2.959 -0.110 Hmax_105 : -5.000 -3.600 -3.947 0.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9858 0.0142 DFMC : 0.9678 0.0322
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 724 LmxM.30.0440 MGCCNSKETKQPKAVEERQPKAPSAKAISDTVSAEEEPKIEFRVASAVEDLRTERISAICAHSRACPFRYNACAVVGGEV 80 KSYFNGGIIFSVVKEGSWYLYNDSLDYEGHVDLRCGPGSSVTAGQRTKLEEVEDGWACAHAIVYPLETLHLVSGTINGYK 160 TNITIKPLNAEYRHEACAAANGTAEAETEAVRSLVTEDMDEEAILHRCMETKTPYVDLRFPPNGEAVARAGRDTRTIPEV 240 AMMRPTQYLSDNIRLSVNDICGPVVALSIEPGNLGDSWFMCAVAIMAENEAMVRSIFAQGSPEEKAVGAYRVLISKNGWW 320 HILILDDYLPTFNRMPVFARSYDDPAEVWASLLQKAYAKVHGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADARK 400 ADTLANALVQLSRSGACVVLSTPGHNSESYLGGRQARDSGAFRARYEDAGLHPGYTYSLERVVIVEECGTLLFKVRNPWR 480 SSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWMCWSDAIQYFDGGGVLFSIPDATDYRVKGVFCKTIPSTVLEI 560 TASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKEDGDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEET 640 YLLVPRIHPKGVKSNYDRPYVIGIISAEKLEGNVQVEAKQIHSDSAVFTNYIAYKSEELPSVEAENQVRLPGMAPVTYVS 720 TKVI 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................P........................................... 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0440 7 MGCCNSK|ET 0.060 . LmxM.30.0440 10 CNSKETK|QP 0.080 . LmxM.30.0440 13 KETKQPK|AV 0.103 . LmxM.30.0440 18 PKAVEER|QP 0.076 . LmxM.30.0440 21 VEERQPK|AP 0.129 . LmxM.30.0440 26 PKAPSAK|AI 0.106 . LmxM.30.0440 39 SAEEEPK|IE 0.063 . LmxM.30.0440 43 EPKIEFR|VA 0.162 . LmxM.30.0440 52 SAVEDLR|TE 0.069 . LmxM.30.0440 55 EDLRTER|IS 0.150 . LmxM.30.0440 64 AICAHSR|AC 0.078 . LmxM.30.0440 69 SRACPFR|YN 0.161 . LmxM.30.0440 81 VVGGEVK|SY 0.080 . LmxM.30.0440 94 IIFSVVK|EG 0.062 . LmxM.30.0440 114 EGHVDLR|CG 0.077 . LmxM.30.0440 126 SVTAGQR|TK 0.068 . LmxM.30.0440 128 TAGQRTK|LE 0.066 . LmxM.30.0440 160 GTINGYK|TN 0.062 . LmxM.30.0440 166 KTNITIK|PL 0.075 . LmxM.30.0440 173 PLNAEYR|HE 0.095 . LmxM.30.0440 192 AETEAVR|SL 0.107 . LmxM.30.0440 207 EEAILHR|CM 0.098 . LmxM.30.0440 212 HRCMETK|TP 0.073 . LmxM.30.0440 219 TPYVDLR|FP 0.128 . LmxM.30.0440 229 NGEAVAR|AG 0.108 . LmxM.30.0440 232 AVARAGR|DT 0.399 . LmxM.30.0440 235 RAGRDTR|TI 0.275 . LmxM.30.0440 244 PEVAMMR|PT 0.075 . LmxM.30.0440 254 YLSDNIR|LS 0.082 . LmxM.30.0440 294 ENEAMVR|SI 0.141 . LmxM.30.0440 305 QGSPEEK|AV 0.107 . LmxM.30.0440 311 KAVGAYR|VL 0.089 . LmxM.30.0440 316 YRVLISK|NG 0.059 . LmxM.30.0440 334 YLPTFNR|MP 0.068 . LmxM.30.0440 340 RMPVFAR|SY 0.175 . LmxM.30.0440 355 WASLLQK|AY 0.079 . LmxM.30.0440 359 LQKAYAK|VH 0.064 . LmxM.30.0440 386 SGSPMCR|FD 0.133 . LmxM.30.0440 389 PMCRFDK|EW 0.159 . LmxM.30.0440 399 EATADAR|KA 0.098 . LmxM.30.0440 400 ATADARK|AD 0.074 . LmxM.30.0440 413 ALVQLSR|SG 0.104 . LmxM.30.0440 434 ESYLGGR|QA 0.111 . LmxM.30.0440 437 LGGRQAR|DS 0.595 *ProP* LmxM.30.0440 443 RDSGAFR|AR 0.089 . LmxM.30.0440 445 SGAFRAR|YE 0.192 . LmxM.30.0440 461 YTYSLER|VV 0.111 . LmxM.30.0440 474 CGTLLFK|VR 0.054 . LmxM.30.0440 476 TLLFKVR|NP 0.081 . LmxM.30.0440 480 KVRNPWR|SS 0.142 . LmxM.30.0440 484 PWRSSNK|WS 0.077 . LmxM.30.0440 494 AWSYGSR|QW 0.130 . LmxM.30.0440 510 LLCGAQK|DP 0.081 . LmxM.30.0440 544 PDATDYR|VK 0.087 . LmxM.30.0440 546 ATDYRVK|GV 0.073 . LmxM.30.0440 551 VKGVFCK|TI 0.066 . LmxM.30.0440 567 TASESTR|VL 0.101 . LmxM.30.0440 577 TLSQPDK|RG 0.064 . LmxM.30.0440 578 LSQPDKR|GV 0.491 . LmxM.30.0440 582 DKRGVDR|KE 0.138 . LmxM.30.0440 583 KRGVDRK|EG 0.100 . LmxM.30.0440 598 IMLTVSK|ED 0.074 . LmxM.30.0440 608 DVQQVQK|NT 0.073 . LmxM.30.0440 627 FNFVVGR|DV 0.179 . LmxM.30.0440 646 TYLLVPR|IH 0.087 . LmxM.30.0440 650 VPRIHPK|GV 0.098 . LmxM.30.0440 653 IHPKGVK|SN 0.072 . LmxM.30.0440 658 VKSNYDR|PY 0.109 . LmxM.30.0440 669 GIISAEK|LE 0.062 . LmxM.30.0440 679 NVQVEAK|QI 0.076 . LmxM.30.0440 695 TNYIAYK|SE 0.073 . LmxM.30.0440 709 EAENQVR|LP 0.094 . LmxM.30.0440 722 VTYVSTK|VI 0.072 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0440 ATGGGGTGCTGCAACTCGAAGGAGACCAAGCAGCCGAAGGCGGTGGAGGAGCGGCAGCCG AAGGCTCCGTCTGCGAAGGCGATAAGTGATACGGTGAGTGCGGAAGAGGAGCCCAAGATT GAGTTTAGAGTAGCGAGTGCGGTGGAGGACCTGCGCACCGAGCGCATTTCGGCGATCTGC GCCCACAGCCGTGCCTGCCCCTTCCGCTATAACGCCTGCGCTGTCGTGGGCGGAGAAGTG AAGTCGTACTTCAACGGTGGCATCATTTTCAGCGTCGTGAAGGAGGGCTCATGGTACCTC TACAACGATTCCCTCGACTACGAGGGGCATGTAGACTTACGCTGCGGCCCAGGCTCGAGT GTCACCGCTGGGCAGCGGACAAAGCTGGAAGAGGTAGAGGACGGCTGGGCGTGCGCACAC GCCATCGTGTACCCATTGGAGACGCTGCATTTGGTCTCCGGCACCATCAACGGCTACAAG ACCAACATCACTATCAAGCCCCTAAATGCTGAGTACCGTCACGAGGCGTGTGCGGCTGCC AACGGCACTGCCGAAGCGGAGACAGAGGCCGTTCGCTCTCTCGTCACCGAGGACATGGAC GAGGAGGCGATTCTGCACCGCTGCATGGAGACAAAAACGCCGTACGTCGACCTGAGGTTC CCGCCGAACGGCGAGGCCGTGGCACGCGCCGGCAGGGACACCCGCACCATCCCCGAGGTG GCCATGATGCGCCCGACGCAGTACCTGTCGGATAATATCCGCCTTTCGGTGAACGACATT TGCGGTCCAGTGGTGGCCCTGTCCATCGAACCGGGCAACCTCGGCGACTCGTGGTTTATG TGCGCCGTGGCCATCATGGCGGAGAATGAGGCGATGGTCCGCAGTATTTTCGCACAGGGC TCGCCGGAGGAGAAGGCGGTCGGTGCGTACCGCGTGCTGATCAGCAAAAACGGCTGGTGG CACATCCTCATTCTGGACGACTACTTGCCCACGTTCAACCGCATGCCCGTGTTTGCGCGC TCGTACGACGATCCGGCGGAGGTGTGGGCCTCGTTGCTGCAAAAAGCGTATGCGAAGGTG CACGGTTCCTATGCCGCGATCACTGGCGGCGACGCTCTACAGGCTCTCGCCGACTTGAGC GGCTCGCCGATGTGCCGTTTTGACAAGGAGTGGGAGGAGGCAACGGCGGACGCGAGAAAG GCGGACACACTGGCGAATGCGCTGGTGCAGCTTTCCCGCTCTGGCGCCTGCGTTGTGCTC AGCACTCCAGGTCACAATTCAGAGAGCTACCTGGGCGGCCGTCAGGCGAGAGATTCGGGG GCCTTCCGTGCCCGCTACGAGGACGCCGGTTTACATCCCGGCTACACGTACTCTTTAGAG CGCGTTGTGATTGTCGAGGAGTGCGGTACCCTGCTGTTCAAGGTACGCAACCCTTGGCGC TCATCGAACAAGTGGAGTGGCGCATGGAGTTACGGTTCCAGGCAGTGGGATGAGAATCAG GATGCCTGCCTCCTCTGCGGCGCCCAGAAGGACCCGGAGGATGGCAGCTTCTGGATGTGC TGGAGTGACGCCATCCAGTACTTCGACGGAGGCGGTGTTTTGTTTTCGATCCCCGACGCG ACGGACTACCGTGTTAAGGGGGTGTTTTGCAAGACTATCCCAAGCACGGTTCTTGAGATC ACGGCCTCAGAGTCCACCCGGGTGCTTTTCACCCTCTCGCAACCCGACAAGCGCGGCGTG GACCGCAAGGAGGGCGCGGCGCTCTTTGCTCCGATCATGTTGACCGTGTCCAAGGAGGAT GGCGACGTACAGCAGGTGCAGAAGAACACCAGCTGGAACCCGACAATGCCCTCCGAGGAG TTCAACTTTGTTGTTGGCCGCGATGTCGCCATGTGGTTCACGCTGGAGGCCGAGGAGACG TACCTTCTCGTGCCACGCATACACCCAAAGGGCGTCAAGAGCAACTACGATCGACCGTAC GTGATTGGCATAATATCAGCAGAGAAGCTGGAGGGCAACGTGCAGGTGGAAGCGAAGCAG ATTCACAGCGACTCGGCGGTGTTCACGAACTATATCGCCTACAAATCGGAGGAGCTGCCG TCGGTCGAGGCGGAGAACCAGGTACGGCTTCCTGGCATGGCCCCCGTGACGTACGTGTCC ACCAAGGTGATTTGA
  • Download Fasta

  • Fasta :-

    MGCCNSKETKQPKAVEERQPKAPSAKAISDTVSAEEEPKIEFRVASAVEDLRTERISAIC AHSRACPFRYNACAVVGGEVKSYFNGGIIFSVVKEGSWYLYNDSLDYEGHVDLRCGPGSS VTAGQRTKLEEVEDGWACAHAIVYPLETLHLVSGTINGYKTNITIKPLNAEYRHEACAAA NGTAEAETEAVRSLVTEDMDEEAILHRCMETKTPYVDLRFPPNGEAVARAGRDTRTIPEV AMMRPTQYLSDNIRLSVNDICGPVVALSIEPGNLGDSWFMCAVAIMAENEAMVRSIFAQG SPEEKAVGAYRVLISKNGWWHILILDDYLPTFNRMPVFARSYDDPAEVWASLLQKAYAKV HGSYAAITGGDALQALADLSGSPMCRFDKEWEEATADARKADTLANALVQLSRSGACVVL STPGHNSESYLGGRQARDSGAFRARYEDAGLHPGYTYSLERVVIVEECGTLLFKVRNPWR SSNKWSGAWSYGSRQWDENQDACLLCGAQKDPEDGSFWMCWSDAIQYFDGGGVLFSIPDA TDYRVKGVFCKTIPSTVLEITASESTRVLFTLSQPDKRGVDRKEGAALFAPIMLTVSKED GDVQQVQKNTSWNPTMPSEEFNFVVGRDVAMWFTLEAEETYLLVPRIHPKGVKSNYDRPY VIGIISAEKLEGNVQVEAKQIHSDSAVFTNYIAYKSEELPSVEAENQVRLPGMAPVTYVS TKVI

  • title: catalytic site
  • coordinates: S277,Y455,N477
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0440256 SNIRLSVNDI0.997unspLmxM.30.0440256 SNIRLSVNDI0.997unspLmxM.30.0440256 SNIRLSVNDI0.997unspLmxM.30.0440301 SFAQGSPEEK0.995unspLmxM.30.0440341 SVFARSYDDP0.993unspLmxM.30.0440597 SMLTVSKEDG0.998unspLmxM.30.0440654 SKGVKSNYDR0.991unspLmxM.30.044033 SSDTVSAEEE0.997unspLmxM.30.044057 STERISAICA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India