LmxM.30.0460a | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0460aOTHER0.9903070.0051710.004522
No Results

  • Fasta :-

    >LmxM.30.0460a MLHIREWAHAGGGQTSVRRYDSLAWHLCGLDGIAYCVLCFVCTGLFAYVTAALRSISSAS SAPPPPHTSTQRQSPHRLMALCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFED GRCYRVEVDRHKWFLYNDSLDMEMHVSFTFQKTTAVYKTEHGRTTVRKTPTGGTQCSVVV YPLETLPYVKATKRTQIFYSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVSHN EEEILCRCRKSKILYIDMGFPPSEAALKRPHEKQSVANMHAIAWRRPQDYIPAIAHEEIK LFRHGVSAAGIGQGHLGDCWLMCSIAVVAESTTMVKDIFRHPVSQSRREKEERAGGYRVC ISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVSLLEKAYAKLHGSYASIVGGNPL HALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAG SGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNS TGWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIP SVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTD NPEVHPPEKYEYIVARDVGLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTA RGLRVSFVHLPDTCPTLRNVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTE TYLHPQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/674 Sequence name : 674 Sequence length : 786 VALUES OF COMPUTED PARAMETERS Coef20 : 3.802 CoefTot : -0.852 ChDiff : 31 ZoneTo : 20 KR : 3 DE : 1 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.065 2.218 0.617 0.727 MesoH : 0.026 0.306 -0.140 0.268 MuHd_075 : 34.320 14.932 7.596 8.266 MuHd_095 : 20.264 9.369 6.270 2.740 MuHd_100 : 9.342 4.729 3.546 3.258 MuHd_105 : 24.803 13.744 4.893 6.899 Hmax_075 : -0.817 2.000 -1.860 2.275 Hmax_095 : 11.900 5.900 1.492 3.560 Hmax_100 : -6.100 -3.200 -1.138 1.980 Hmax_105 : 3.100 2.500 -2.759 3.160 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9089 0.0911 DFMC : 0.9753 0.0247
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 786 LmxM.30.0460a MLHIREWAHAGGGQTSVRRYDSLAWHLCGLDGIAYCVLCFVCTGLFAYVTAALRSISSASSAPPPPHTSTQRQSPHRLMA 80 LCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFEDGRCYRVEVDRHKWFLYNDSLDMEMHVSFTFQKTTAVYKTE 160 HGRTTVRKTPTGGTQCSVVVYPLETLPYVKATKRTQIFYSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVSHN 240 EEEILCRCRKSKILYIDMGFPPSEAALKRPHEKQSVANMHAIAWRRPQDYIPAIAHEEIKLFRHGVSAAGIGQGHLGDCW 320 LMCSIAVVAESTTMVKDIFRHPVSQSRREKEERAGGYRVCISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVSLL 400 EKAYAKLHGSYASIVGGNPLHALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAG 480 SGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNSTGWQKHSLVRRSCKPSKVSD 560 GTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGLLI 640 SVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDVGLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTA 720 RGLRVSFVHLPDTCPTLRNVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .................................................................. 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0460a 5 --MLHIR|EW 0.110 . LmxM.30.0460a 18 GGQTSVR|RY 0.088 . LmxM.30.0460a 19 GQTSVRR|YD 0.132 . LmxM.30.0460a 54 YVTAALR|SI 0.092 . LmxM.30.0460a 72 PHTSTQR|QS 0.084 . LmxM.30.0460a 77 QRQSPHR|LM 0.092 . LmxM.30.0460a 86 ALCGGSR|TK 0.084 . LmxM.30.0460a 88 CGGSRTK|SK 0.078 . LmxM.30.0460a 90 GSRTKSK|AR 0.075 . LmxM.30.0460a 92 RTKSKAR|EH 0.149 . LmxM.30.0460a 98 REHDDQR|KV 0.127 . LmxM.30.0460a 99 EHDDQRK|VH 0.073 . LmxM.30.0460a 104 RKVHDFK|YG 0.092 . LmxM.30.0460a 122 PLFEDGR|CY 0.082 . LmxM.30.0460a 125 EDGRCYR|VE 0.165 . LmxM.30.0460a 130 YRVEVDR|HK 0.091 . LmxM.30.0460a 132 VEVDRHK|WF 0.056 . LmxM.30.0460a 152 VSFTFQK|TT 0.064 . LmxM.30.0460a 158 KTTAVYK|TE 0.058 . LmxM.30.0460a 163 YKTEHGR|TT 0.098 . LmxM.30.0460a 167 HGRTTVR|KT 0.105 . LmxM.30.0460a 168 GRTTVRK|TP 0.109 . LmxM.30.0460a 190 ETLPYVK|AT 0.056 . LmxM.30.0460a 193 PYVKATK|RT 0.057 . LmxM.30.0460a 194 YVKATKR|TQ 0.106 . LmxM.30.0460a 206 SAACVSR|DL 0.150 . LmxM.30.0460a 215 APGYIEK|VN 0.061 . LmxM.30.0460a 218 YIEKVNR|EA 0.125 . LmxM.30.0460a 221 KVNREAK|AK 0.241 . LmxM.30.0460a 223 NREAKAK|CM 0.082 . LmxM.30.0460a 230 CMHETQK|VA 0.092 . LmxM.30.0460a 247 EEEILCR|CR 0.077 . LmxM.30.0460a 249 EILCRCR|KS 0.070 . LmxM.30.0460a 250 ILCRCRK|SK 0.357 . LmxM.30.0460a 252 CRCRKSK|IL 0.167 . LmxM.30.0460a 268 PSEAALK|RP 0.059 . LmxM.30.0460a 269 SEAALKR|PH 0.254 . LmxM.30.0460a 273 LKRPHEK|QS 0.083 . LmxM.30.0460a 285 MHAIAWR|RP 0.100 . LmxM.30.0460a 286 HAIAWRR|PQ 0.134 . LmxM.30.0460a 300 IAHEEIK|LF 0.070 . LmxM.30.0460a 303 EEIKLFR|HG 0.077 . LmxM.30.0460a 336 ESTTMVK|DI 0.070 . LmxM.30.0460a 340 MVKDIFR|HP 0.073 . LmxM.30.0460a 347 HPVSQSR|RE 0.080 . LmxM.30.0460a 348 PVSQSRR|EK 0.167 . LmxM.30.0460a 350 SQSRREK|EE 0.199 . LmxM.30.0460a 353 RREKEER|AG 0.108 . LmxM.30.0460a 358 ERAGGYR|VC 0.087 . LmxM.30.0460a 363 YRVCISK|NG 0.058 . LmxM.30.0460a 387 GVVYFAR|ST 0.191 . LmxM.30.0460a 402 WVSLLEK|AY 0.068 . LmxM.30.0460a 406 LEKAYAK|LH 0.063 . LmxM.30.0460a 439 SFTNTWR|AA 0.119 . LmxM.30.0460a 453 VASQFFK|DL 0.091 . LmxM.30.0460a 457 FFKDLLR|YR 0.073 . LmxM.30.0460a 459 KDLLRYR|KN 0.087 . LmxM.30.0460a 460 DLLRYRK|NG 0.104 . LmxM.30.0460a 492 EASLAAR|YK 0.182 . LmxM.30.0460a 494 SLAARYK|TA 0.092 . LmxM.30.0460a 510 YSVLMVR|QF 0.073 . LmxM.30.0460a 516 RQFVIPR|VK 0.070 . LmxM.30.0460a 518 FVIPRVK|LL 0.057 . LmxM.30.0460a 521 PRVKLLK|IR 0.066 . LmxM.30.0460a 523 VKLLKIR|NP 0.090 . LmxM.30.0460a 538 WTGAWGK|NS 0.065 . LmxM.30.0460a 545 NSTGWQK|HS 0.058 . LmxM.30.0460a 550 QKHSLVR|RS 0.078 . LmxM.30.0460a 551 KHSLVRR|SC 0.390 . LmxM.30.0460a 554 LVRRSCK|PS 0.177 . LmxM.30.0460a 557 RSCKPSK|VS 0.075 . LmxM.30.0460a 568 TFWMEWR|DA 0.144 . LmxM.30.0460a 583 GGVCMVK|KA 0.069 . LmxM.30.0460a 584 GVCMVKK|AW 0.136 . LmxM.30.0460a 590 KAWYQYR|FP 0.174 . LmxM.30.0460a 605 IPSVVLK|IE 0.063 . LmxM.30.0460a 609 VLKIELR|KK 0.083 . LmxM.30.0460a 610 LKIELRK|KQ 0.065 . LmxM.30.0460a 611 KIELRKK|QK 0.074 . LmxM.30.0460a 613 ELRKKQK|LL 0.065 . LmxM.30.0460a 621 LFTLSQK|DR 0.059 . LmxM.30.0460a 623 TLSQKDR|RL 0.092 . LmxM.30.0460a 624 LSQKDRR|LQ 0.115 . LmxM.30.0460a 636 DPDQLYK|GL 0.069 . LmxM.30.0460a 649 TGHNAQK|GT 0.081 . LmxM.30.0460a 669 EVHPPEK|YE 0.067 . LmxM.30.0460a 676 YEYIVAR|DV 0.265 . LmxM.30.0460a 688 LELDPTK|GP 0.062 . LmxM.30.0460a 696 PFYVIPR|IM 0.089 . LmxM.30.0460a 706 TNQNGPK|DF 0.079 . LmxM.30.0460a 717 GMLAPNK|ST 0.088 . LmxM.30.0460a 721 PNKSTAR|GL 0.124 . LmxM.30.0460a 724 STARGLR|VS 0.237 . LmxM.30.0460a 738 DTCPTLR|NV 0.084 . LmxM.30.0460a 754 EAATHVR|FQ 0.127 . LmxM.30.0460a 758 HVRFQYK|KR 0.082 . LmxM.30.0460a 759 VRFQYKK|RG 0.100 . LmxM.30.0460a 760 RFQYKKR|GG 0.205 . LmxM.30.0460a 765 KRGGAPR|VK 0.103 . LmxM.30.0460a 767 GGAPRVK|AG 0.070 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0460a ATGCTGCACATCAGAGAATGGGCACACGCCGGTGGCGGACAAACTTCTGTGCGGCGTTAT GATTCGTTGGCGTGGCACCTCTGTGGCCTCGATGGCATCGCTTACTGTGTCTTGTGTTTT GTTTGCACGGGTCTGTTCGCATACGTCACGGCAGCACTGCGATCCATCTCCTCCGCCTCT TCCGCCCCTCCCCCCCCCCACACATCCACACAGCGGCAGTCGCCTCACCGACTAATGGCG CTCTGCGGTGGTAGCCGCACCAAGAGCAAGGCAAGGGAACACGATGACCAGAGGAAGGTG CACGACTTCAAGTATGGCGGCCCTGCGGTCACGGGGGACTGCTACCCCCTCTTTGAAGAC GGCCGATGCTACCGGGTGGAGGTGGACAGGCACAAGTGGTTCCTCTACAACGACTCGCTG GACATGGAGATGCACGTCAGCTTCACCTTCCAAAAAACGACGGCCGTTTACAAAACAGAG CATGGCCGGACGACGGTGAGGAAGACGCCCACCGGGGGGACACAGTGCTCCGTCGTCGTC TACCCGCTGGAGACGCTGCCGTACGTGAAGGCCACCAAGAGGACGCAGATCTTCTACAGC GCCGCGTGCGTGTCGCGCGACTTGGCCCCGGGCTACATTGAGAAGGTTAACCGCGAGGCG AAGGCGAAGTGCATGCACGAGACGCAAAAGGTGGCCGGCGTGGCTGGGGTGAGCCACAAC GAGGAGGAAATCCTGTGCAGGTGCCGGAAGAGCAAGATCCTATACATCGACATGGGCTTC CCCCCATCCGAGGCGGCTCTGAAGCGACCTCACGAGAAGCAGAGCGTGGCAAACATGCAC GCCATCGCGTGGAGACGGCCGCAGGACTACATACCGGCGATAGCGCACGAGGAGATCAAG CTGTTCCGTCACGGCGTGAGCGCTGCCGGCATTGGGCAGGGTCACCTCGGCGACTGCTGG CTCATGTGCTCGATCGCGGTCGTGGCGGAGAGCACGACGATGGTGAAGGACATCTTTCGC CACCCCGTCTCCCAGTCGAGGCGAGAGAAAGAGGAGCGGGCGGGCGGCTACCGCGTGTGC ATCAGTAAGAACGGCTGGTTCCACCACATCATTGTCGACAGCTACCTGCCGACGTACAAC GGGGTCGTTTACTTTGCCCGCTCCACCGGTGACCCGTACGAGCTGTGGGTGTCGCTGCTG GAGAAGGCGTATGCCAAGCTGCACGGCTCGTACGCGTCCATTGTCGGCGGCAATCCTCTG CACGCCCTGCAGGATTTGACGGGGTTTCCGGTGTACTCCTTCACAAATACGTGGAGGGCA GCGGCGAATGAGGAGGCGGTCGCATCTCAGTTTTTCAAGGACCTGCTGCGCTACCGCAAG AATGGCTACCTCATCTCGATCAGCACTCCAGGCACGGACACGAGCGCGTACAACGCTGGT AGCGGGAATGCGAACGAGGCATCACTTGCGGCGCGCTACAAGACGGCGGGCCTGAGCACC GGCCACTCCTACTCGGTGCTGATGGTGCGCCAGTTTGTCATTCCGCGAGTGAAGCTGCTG AAGATACGCAACCCGTGGGGAAGCGGTGGCGAGTGGACCGGCGCATGGGGCAAGAACAGC ACCGGGTGGCAGAAGCACTCCTTGGTGCGCCGGTCGTGCAAGCCGAGCAAGGTGAGCGAT GGCACTTTCTGGATGGAGTGGAGGGACGCGGTGCAGTTCTTTGAGGGTGGCGGGGTCTGC ATGGTGAAGAAGGCCTGGTACCAGTATCGCTTCCCGGGCCAGTTCATTGGCATAATCCCG TCCGTCGTGCTAAAGATCGAACTCAGGAAGAAGCAGAAACTACTCTTCACCCTGTCACAG AAGGACCGCCGCCTGCAGAACCCCGACGACCCGGATCAGCTGTACAAGGGGCTGCTTATC TCCGTCACGGGGCACAACGCGCAGAAGGGCACGCAGCAGATTGTGGCCCTCAGCACCGAT AACCCCGAGGTGCATCCACCAGAGAAGTACGAGTACATTGTTGCCCGCGACGTTGGCCTC GAGCTCGAGCTCGACCCCACAAAAGGCCCCTTCTACGTCATTCCGCGCATCATGACGACG AACCAAAACGGCCCGAAGGACTTCACACTGGGCATGCTGGCACCCAACAAGTCAACCGCA AGAGGACTGCGGGTGTCTTTTGTACACCTGCCCGACACGTGCCCGACGCTCCGCAACGTG GTGTCATTCCCAATGAACGGGGAGGCGGCGACACATGTGCGATTTCAGTACAAGAAGCGC GGCGGTGCGCCCCGCGTAAAGGCGGGCATCACCGTCTTTGACGCCACCCACGTGACGGAG ACGTACCTCCACCCCCAATAA
  • Download Fasta

  • Fasta :-

    MLHIREWAHAGGGQTSVRRYDSLAWHLCGLDGIAYCVLCFVCTGLFAYVTAALRSISSAS SAPPPPHTSTQRQSPHRLMALCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFED GRCYRVEVDRHKWFLYNDSLDMEMHVSFTFQKTTAVYKTEHGRTTVRKTPTGGTQCSVVV YPLETLPYVKATKRTQIFYSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVSHN EEEILCRCRKSKILYIDMGFPPSEAALKRPHEKQSVANMHAIAWRRPQDYIPAIAHEEIK LFRHGVSAAGIGQGHLGDCWLMCSIAVVAESTTMVKDIFRHPVSQSRREKEERAGGYRVC ISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVSLLEKAYAKLHGSYASIVGGNPL HALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAG SGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVKLLKIRNPWGSGGEWTGAWGKNS TGWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIP SVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTD NPEVHPPEKYEYIVARDVGLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTA RGLRVSFVHLPDTCPTLRNVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTE TYLHPQ

  • title: catalytic site
  • coordinates: C319,H502,N524
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0460a388 SYFARSTGDP0.99unspLmxM.30.0460a388 SYFARSTGDP0.99unspLmxM.30.0460a388 SYFARSTGDP0.99unspLmxM.30.0460a552 SLVRRSCKPS0.997unspLmxM.30.0460a74 STQRQSPHRL0.995unspLmxM.30.0460a165 THGRTTVRKT0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India