LmxM.30.0460b | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0460bOTHER0.9935090.0014290.005061
No Results

  • Fasta :-

    >LmxM.30.0460b MHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGDCWLMCSIAVVAESTTMVKDI FRHPVSQSRREKEERAGGYRVCISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVS LLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRY RKNGYLISISTPGTDTSAYNAGSGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVK LLKIRNPWGSGGEWTGAWGKNSTRWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGG VCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGL LISVTGHNAQKGTQQIVALSTDNPEVYPPEKYEHIVARDVGLELELDPTKGPFYVIPRIM TTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPETCPTFRNVVSFPMNGEAATHVRFQYK KRGGAPRVKAGITVFDATHVTETYLHPQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/116 Sequence name : 116 Sequence length : 508 VALUES OF COMPUTED PARAMETERS Coef20 : 3.459 CoefTot : -0.095 ChDiff : 21 ZoneTo : 10 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.471 1.524 0.262 0.543 MesoH : -0.292 0.148 -0.351 0.260 MuHd_075 : 20.014 5.761 4.650 3.380 MuHd_095 : 28.869 17.999 7.636 5.824 MuHd_100 : 27.266 12.342 5.736 5.538 MuHd_105 : 24.962 9.062 5.128 5.106 Hmax_075 : 4.900 4.317 -1.413 3.453 Hmax_095 : 9.800 8.700 -0.523 4.296 Hmax_100 : 7.800 8.700 -0.523 4.270 Hmax_105 : 8.050 8.750 -0.654 4.317 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8678 0.1322 DFMC : 0.9058 0.0942
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 508 LmxM.30.0460b MHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGDCWLMCSIAVVAESTTMVKDIFRHPVSQSRREKEERAGGYR 80 VCISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVSLLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTW 160 RAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAGSGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVK 240 LLKIRNPWGSGGEWTGAWGKNSTRWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGI 320 IPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVYPPEKYEHIVARDV 400 GLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPETCPTFRNVVSFPMNGEAATHVRFQYK 480 KRGGAPRVKAGITVFDATHVTETYLHPQ 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0460b 7 MHAIAWR|RP 0.095 . LmxM.30.0460b 8 HAIAWRR|PQ 0.119 . LmxM.30.0460b 22 IAHEEIK|LF 0.070 . LmxM.30.0460b 25 EEIKLFR|HG 0.077 . LmxM.30.0460b 58 ESTTMVK|DI 0.070 . LmxM.30.0460b 62 MVKDIFR|HP 0.073 . LmxM.30.0460b 69 HPVSQSR|RE 0.080 . LmxM.30.0460b 70 PVSQSRR|EK 0.167 . LmxM.30.0460b 72 SQSRREK|EE 0.199 . LmxM.30.0460b 75 RREKEER|AG 0.108 . LmxM.30.0460b 80 ERAGGYR|VC 0.087 . LmxM.30.0460b 85 YRVCISK|NG 0.058 . LmxM.30.0460b 109 GVVYFAR|ST 0.191 . LmxM.30.0460b 124 WVSLLEK|AY 0.072 . LmxM.30.0460b 128 LEKAYAK|LQ 0.063 . LmxM.30.0460b 161 SFTNTWR|AA 0.119 . LmxM.30.0460b 175 VASQFFK|DL 0.091 . LmxM.30.0460b 179 FFKDLLR|YR 0.073 . LmxM.30.0460b 181 KDLLRYR|KN 0.087 . LmxM.30.0460b 182 DLLRYRK|NG 0.104 . LmxM.30.0460b 214 EASLAAR|YK 0.182 . LmxM.30.0460b 216 SLAARYK|TA 0.092 . LmxM.30.0460b 232 YSVLMVR|QF 0.073 . LmxM.30.0460b 238 RQFVIPR|VK 0.070 . LmxM.30.0460b 240 FVIPRVK|LL 0.057 . LmxM.30.0460b 243 PRVKLLK|IR 0.066 . LmxM.30.0460b 245 VKLLKIR|NP 0.090 . LmxM.30.0460b 260 WTGAWGK|NS 0.064 . LmxM.30.0460b 264 WGKNSTR|WQ 0.086 . LmxM.30.0460b 267 NSTRWQK|HS 0.103 . LmxM.30.0460b 272 QKHSLVR|RS 0.081 . LmxM.30.0460b 273 KHSLVRR|SC 0.381 . LmxM.30.0460b 276 LVRRSCK|PS 0.177 . LmxM.30.0460b 279 RSCKPSK|VS 0.075 . LmxM.30.0460b 290 TFWMEWR|DA 0.144 . LmxM.30.0460b 305 GGVCMVK|KA 0.069 . LmxM.30.0460b 306 GVCMVKK|AW 0.136 . LmxM.30.0460b 312 KAWYQYR|FP 0.174 . LmxM.30.0460b 327 IPSVVLK|IE 0.063 . LmxM.30.0460b 331 VLKIELR|KK 0.083 . LmxM.30.0460b 332 LKIELRK|KQ 0.065 . LmxM.30.0460b 333 KIELRKK|QK 0.074 . LmxM.30.0460b 335 ELRKKQK|LL 0.065 . LmxM.30.0460b 343 LFTLSQK|DR 0.059 . LmxM.30.0460b 345 TLSQKDR|RL 0.092 . LmxM.30.0460b 346 LSQKDRR|LQ 0.115 . LmxM.30.0460b 358 DPDQLYK|GL 0.069 . LmxM.30.0460b 371 TGHNAQK|GT 0.081 . LmxM.30.0460b 391 EVYPPEK|YE 0.066 . LmxM.30.0460b 398 YEHIVAR|DV 0.346 . LmxM.30.0460b 410 LELDPTK|GP 0.062 . LmxM.30.0460b 418 PFYVIPR|IM 0.089 . LmxM.30.0460b 428 TNQNGPK|DF 0.079 . LmxM.30.0460b 439 GMLAPNK|ST 0.088 . LmxM.30.0460b 443 PNKSTAR|GL 0.124 . LmxM.30.0460b 446 STARGLR|VS 0.230 . LmxM.30.0460b 460 ETCPTFR|NV 0.091 . LmxM.30.0460b 476 EAATHVR|FQ 0.127 . LmxM.30.0460b 480 HVRFQYK|KR 0.082 . LmxM.30.0460b 481 VRFQYKK|RG 0.100 . LmxM.30.0460b 482 RFQYKKR|GG 0.205 . LmxM.30.0460b 487 KRGGAPR|VK 0.103 . LmxM.30.0460b 489 GGAPRVK|AG 0.070 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0460b ATGCACGCCATCGCGTGGAGACGGCCGCAGGACTACCTACCGGCGATAGCGCACGAGGAG ATCAAGCTGTTCCGTCACGGCGTGAGCGCTGCCGGCATTGGGCAGGGTCACCTCGGCGAC TGCTGGCTCATGTGCTCGATCGCGGTCGTGGCGGAGAGCACGACGATGGTGAAGGACATC TTTCGCCACCCCGTCTCCCAGTCGAGGCGAGAGAAAGAGGAGCGGGCGGGCGGCTACCGC GTGTGCATCAGTAAGAACGGCTGGTTCCACCACATCATTGTCGACAGCTACCTGCCGACG TACAACGGGGTCGTTTACTTTGCCCGCTCCACCGGTGACCCGTACGAGCTGTGGGTGTCG CTGCTGGAGAAGGCGTATGCCAAGCTGCAGGGCTCGTACGCGTCCATTGTCGGCGGCAAT CCTCTGCACGCCCTGCAGGATTTGACGGGGTTTCCGGTGTACTCCTTCACAAATACGTGG AGGGCAGCGGCGAATGAGGAGGCGGTCGCATCTCAGTTTTTCAAGGACCTGCTGCGCTAC CGCAAGAATGGCTACCTCATCTCGATCAGCACTCCAGGCACGGACACGAGCGCGTACAAC GCTGGTAGCGGGAATGCGAACGAGGCATCACTTGCGGCGCGCTACAAGACGGCGGGCCTG AGCACCGGCCACTCCTACTCGGTGCTGATGGTGCGCCAGTTTGTCATTCCGCGAGTGAAG CTGCTGAAGATACGCAACCCGTGGGGAAGCGGTGGCGAGTGGACCGGCGCATGGGGCAAG AACAGCACCAGGTGGCAGAAGCACTCCTTGGTGCGCCGGTCGTGCAAGCCGAGCAAGGTG AGCGATGGCACTTTCTGGATGGAGTGGAGGGACGCGGTGCAGTTCTTTGAGGGTGGCGGG GTCTGCATGGTGAAGAAGGCCTGGTACCAGTATCGCTTCCCGGGCCAGTTCATTGGCATA ATCCCGTCCGTCGTGCTAAAGATCGAACTCAGGAAGAAGCAGAAACTACTCTTCACCCTG TCACAGAAGGACCGCCGCCTGCAGAACCCCGACGACCCGGATCAGCTGTACAAGGGGCTG CTTATCTCCGTCACGGGGCACAACGCGCAGAAGGGCACGCAGCAGATTGTGGCCCTCAGC ACCGATAACCCCGAGGTGTATCCACCAGAGAAGTACGAGCACATTGTTGCCCGCGACGTT GGCCTCGAGCTCGAGCTCGACCCCACAAAAGGCCCCTTCTACGTCATTCCGCGCATCATG ACGACGAACCAAAACGGCCCGAAGGACTTCACACTGGGCATGCTGGCACCCAACAAGTCA ACCGCAAGAGGACTGCGGGTGTCTTTTGTACACCTGCCCGAGACGTGCCCGACGTTCCGC AACGTGGTGTCATTCCCAATGAACGGGGAGGCGGCGACACATGTGCGATTTCAGTACAAG AAGCGCGGCGGTGCGCCCCGCGTAAAGGCGGGCATCACCGTCTTTGACGCCACCCACGTG ACGGAGACGTACCTCCACCCCCAATAA
  • Download Fasta

  • Fasta :-

    MHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGDCWLMCSIAVVAESTTMVKDI FRHPVSQSRREKEERAGGYRVCISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVS LLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRY RKNGYLISISTPGTDTSAYNAGSGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVK LLKIRNPWGSGGEWTGAWGKNSTRWQKHSLVRRSCKPSKVSDGTFWMEWRDAVQFFEGGG VCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGL LISVTGHNAQKGTQQIVALSTDNPEVYPPEKYEHIVARDVGLELELDPTKGPFYVIPRIM TTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPETCPTFRNVVSFPMNGEAATHVRFQYK KRGGAPRVKAGITVFDATHVTETYLHPQ

  • title: catalytic site
  • coordinates: C41,H224,N246
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0460b110 SYFARSTGDP0.99unspLmxM.30.0460b274 SLVRRSCKPS0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India