LmxM.30.0460c | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.0460cOTHER0.9993520.0005190.000129
No Results

  • Fasta :-

    >LmxM.30.0460c MALCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFEDGRCYRVEVDRHKWFLYND SLDMEMHVSFTFQKTTAVYKTEHGRTTVRKTPTGGTQCSVVVYPLETLPYVKVTKRTQIL YSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVSHNEEEILCRCRKSKILYIDM GFPPSEAALKRPHDKQSVASMHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGD CWLMCSIAVVAESTTMVKDIFRHPVSQSRRKKEERAGGYRVCISKNGWFHHIIVDSYLPT YNGVVYFARSTGDPYELWVSLLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTW RAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAGSGNANEASLAARYKTAGL STGHSYSVLMVRQFVIPRVKLLKIRNPWGSGDEWTGAWGKNSTGWQKHSLVRRSCKPSKV SDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTL SQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDV GLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPDTCPTLR NVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/546 Sequence name : 546 Sequence length : 708 VALUES OF COMPUTED PARAMETERS Coef20 : 3.746 CoefTot : 0.172 ChDiff : 29 ZoneTo : 14 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.471 1.524 0.262 0.543 MesoH : -0.292 0.200 -0.351 0.260 MuHd_075 : 15.565 2.105 1.469 2.735 MuHd_095 : 13.580 2.848 1.493 2.667 MuHd_100 : 19.381 5.530 1.940 4.142 MuHd_105 : 23.103 8.213 3.263 4.996 Hmax_075 : -12.075 -4.100 -3.386 -0.957 Hmax_095 : -2.100 -2.363 -3.137 1.304 Hmax_100 : -3.000 -1.100 -3.721 0.850 Hmax_105 : 6.067 3.617 -1.114 2.765 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9257 0.0743 DFMC : 0.8859 0.1141
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 708 LmxM.30.0460c MALCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFEDGRCYRVEVDRHKWFLYNDSLDMEMHVSFTFQKTTAVYK 80 TEHGRTTVRKTPTGGTQCSVVVYPLETLPYVKVTKRTQILYSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVS 160 HNEEEILCRCRKSKILYIDMGFPPSEAALKRPHDKQSVASMHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGD 240 CWLMCSIAVVAESTTMVKDIFRHPVSQSRRKKEERAGGYRVCISKNGWFHHIIVDSYLPTYNGVVYFARSTGDPYELWVS 320 LLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTWRAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYN 400 AGSGNANEASLAARYKTAGLSTGHSYSVLMVRQFVIPRVKLLKIRNPWGSGDEWTGAWGKNSTGWQKHSLVRRSCKPSKV 480 SDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTLSQKDRRLQNPDDPDQLYKGL 560 LISVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDVGLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKS 640 TARGLRVSFVHLPDTCPTLRNVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...............................P................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.0460c 8 ALCGGSR|TK 0.090 . LmxM.30.0460c 10 CGGSRTK|SK 0.078 . LmxM.30.0460c 12 GSRTKSK|AR 0.075 . LmxM.30.0460c 14 RTKSKAR|EH 0.149 . LmxM.30.0460c 20 REHDDQR|KV 0.127 . LmxM.30.0460c 21 EHDDQRK|VH 0.073 . LmxM.30.0460c 26 RKVHDFK|YG 0.092 . LmxM.30.0460c 44 PLFEDGR|CY 0.082 . LmxM.30.0460c 47 EDGRCYR|VE 0.165 . LmxM.30.0460c 52 YRVEVDR|HK 0.091 . LmxM.30.0460c 54 VEVDRHK|WF 0.056 . LmxM.30.0460c 74 VSFTFQK|TT 0.064 . LmxM.30.0460c 80 KTTAVYK|TE 0.058 . LmxM.30.0460c 85 YKTEHGR|TT 0.098 . LmxM.30.0460c 89 HGRTTVR|KT 0.105 . LmxM.30.0460c 90 GRTTVRK|TP 0.109 . LmxM.30.0460c 112 ETLPYVK|VT 0.053 . LmxM.30.0460c 115 PYVKVTK|RT 0.062 . LmxM.30.0460c 116 YVKVTKR|TQ 0.108 . LmxM.30.0460c 128 SAACVSR|DL 0.149 . LmxM.30.0460c 137 APGYIEK|VN 0.061 . LmxM.30.0460c 140 YIEKVNR|EA 0.125 . LmxM.30.0460c 143 KVNREAK|AK 0.241 . LmxM.30.0460c 145 NREAKAK|CM 0.082 . LmxM.30.0460c 152 CMHETQK|VA 0.092 . LmxM.30.0460c 169 EEEILCR|CR 0.077 . LmxM.30.0460c 171 EILCRCR|KS 0.070 . LmxM.30.0460c 172 ILCRCRK|SK 0.357 . LmxM.30.0460c 174 CRCRKSK|IL 0.167 . LmxM.30.0460c 190 PSEAALK|RP 0.060 . LmxM.30.0460c 191 SEAALKR|PH 0.259 . LmxM.30.0460c 195 LKRPHDK|QS 0.086 . LmxM.30.0460c 207 MHAIAWR|RP 0.107 . LmxM.30.0460c 208 HAIAWRR|PQ 0.117 . LmxM.30.0460c 222 IAHEEIK|LF 0.070 . LmxM.30.0460c 225 EEIKLFR|HG 0.077 . LmxM.30.0460c 258 ESTTMVK|DI 0.070 . LmxM.30.0460c 262 MVKDIFR|HP 0.073 . LmxM.30.0460c 269 HPVSQSR|RK 0.084 . LmxM.30.0460c 270 PVSQSRR|KK 0.161 . LmxM.30.0460c 271 VSQSRRK|KE 0.090 . LmxM.30.0460c 272 SQSRRKK|EE 0.521 *ProP* LmxM.30.0460c 275 RRKKEER|AG 0.115 . LmxM.30.0460c 280 ERAGGYR|VC 0.085 . LmxM.30.0460c 285 YRVCISK|NG 0.058 . LmxM.30.0460c 309 GVVYFAR|ST 0.191 . LmxM.30.0460c 324 WVSLLEK|AY 0.072 . LmxM.30.0460c 328 LEKAYAK|LQ 0.063 . LmxM.30.0460c 361 SFTNTWR|AA 0.119 . LmxM.30.0460c 375 VASQFFK|DL 0.091 . LmxM.30.0460c 379 FFKDLLR|YR 0.073 . LmxM.30.0460c 381 KDLLRYR|KN 0.087 . LmxM.30.0460c 382 DLLRYRK|NG 0.104 . LmxM.30.0460c 414 EASLAAR|YK 0.182 . LmxM.30.0460c 416 SLAARYK|TA 0.092 . LmxM.30.0460c 432 YSVLMVR|QF 0.073 . LmxM.30.0460c 438 RQFVIPR|VK 0.070 . LmxM.30.0460c 440 FVIPRVK|LL 0.057 . LmxM.30.0460c 443 PRVKLLK|IR 0.065 . LmxM.30.0460c 445 VKLLKIR|NP 0.090 . LmxM.30.0460c 460 WTGAWGK|NS 0.066 . LmxM.30.0460c 467 NSTGWQK|HS 0.058 . LmxM.30.0460c 472 QKHSLVR|RS 0.078 . LmxM.30.0460c 473 KHSLVRR|SC 0.390 . LmxM.30.0460c 476 LVRRSCK|PS 0.177 . LmxM.30.0460c 479 RSCKPSK|VS 0.075 . LmxM.30.0460c 490 TFWMEWR|DA 0.144 . LmxM.30.0460c 505 GGVCMVK|KA 0.069 . LmxM.30.0460c 506 GVCMVKK|AW 0.136 . LmxM.30.0460c 512 KAWYQYR|FP 0.174 . LmxM.30.0460c 527 IPSVVLK|IE 0.063 . LmxM.30.0460c 531 VLKIELR|KK 0.083 . LmxM.30.0460c 532 LKIELRK|KQ 0.065 . LmxM.30.0460c 533 KIELRKK|QK 0.074 . LmxM.30.0460c 535 ELRKKQK|LL 0.065 . LmxM.30.0460c 543 LFTLSQK|DR 0.059 . LmxM.30.0460c 545 TLSQKDR|RL 0.092 . LmxM.30.0460c 546 LSQKDRR|LQ 0.115 . LmxM.30.0460c 558 DPDQLYK|GL 0.069 . LmxM.30.0460c 571 TGHNAQK|GT 0.081 . LmxM.30.0460c 591 EVHPPEK|YE 0.067 . LmxM.30.0460c 598 YEYIVAR|DV 0.265 . LmxM.30.0460c 610 LELDPTK|GP 0.062 . LmxM.30.0460c 618 PFYVIPR|IM 0.089 . LmxM.30.0460c 628 TNQNGPK|DF 0.079 . LmxM.30.0460c 639 GMLAPNK|ST 0.088 . LmxM.30.0460c 643 PNKSTAR|GL 0.124 . LmxM.30.0460c 646 STARGLR|VS 0.237 . LmxM.30.0460c 660 DTCPTLR|NV 0.084 . LmxM.30.0460c 676 EAATHVR|FQ 0.127 . LmxM.30.0460c 680 HVRFQYK|KR 0.082 . LmxM.30.0460c 681 VRFQYKK|RG 0.100 . LmxM.30.0460c 682 RFQYKKR|GG 0.205 . LmxM.30.0460c 687 KRGGAPR|VK 0.103 . LmxM.30.0460c 689 GGAPRVK|AG 0.070 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.0460c ATGGCGCTCTGCGGTGGTAGCCGCACCAAGAGCAAGGCAAGGGAACACGATGACCAGAGG AAGGTGCACGACTTCAAGTATGGCGGCCCTGCGGTCACGGGGGACTGCTACCCCCTCTTT GAAGACGGCCGATGCTACCGGGTGGAGGTGGACAGGCACAAGTGGTTCCTCTACAACGAC TCGCTGGACATGGAGATGCACGTCAGCTTCACCTTCCAAAAAACGACGGCCGTTTACAAA ACAGAGCATGGCCGGACGACGGTGAGGAAGACGCCCACCGGGGGGACACAGTGCTCCGTC GTCGTCTACCCGCTGGAGACGCTGCCGTACGTGAAGGTCACCAAGAGGACGCAGATCTTA TACAGCGCCGCGTGCGTGTCGCGCGACTTGGCCCCGGGCTACATTGAGAAGGTTAACCGC GAGGCGAAGGCGAAGTGCATGCACGAGACGCAAAAGGTGGCCGGCGTGGCTGGGGTGAGC CACAACGAGGAGGAAATCCTGTGCAGGTGCCGGAAGAGCAAGATCCTATACATCGACATG GGCTTCCCCCCATCCGAGGCGGCTCTGAAGCGACCTCACGACAAGCAGAGCGTGGCAAGC ATGCACGCCATCGCGTGGAGACGGCCGCAGGACTACCTACCGGCGATAGCGCACGAGGAG ATCAAGCTGTTCCGTCACGGCGTGAGCGCTGCCGGCATTGGGCAGGGTCACCTCGGCGAC TGCTGGCTCATGTGCTCGATCGCGGTCGTGGCGGAGAGCACGACGATGGTGAAGGACATC TTTCGCCACCCTGTCTCCCAGTCGAGGCGAAAGAAAGAGGAGCGGGCGGGCGGCTACCGC GTGTGCATCAGTAAGAACGGCTGGTTCCACCACATCATTGTCGACAGCTACCTGCCGACG TACAACGGGGTCGTTTACTTTGCCCGCTCCACCGGTGACCCGTACGAGCTGTGGGTGTCG CTGCTGGAGAAGGCGTATGCCAAGCTGCAGGGCTCGTACGCGTCCATTGTCGGCGGCAAT CCTCTGCACGCCCTGCAGGATTTGACGGGGTTTCCGGTGTACTCCTTCACAAATACGTGG AGGGCAGCGGCGAATGAGGAGGCGGTCGCATCTCAGTTTTTCAAGGACCTGCTGCGCTAC CGCAAGAATGGCTACCTCATCTCGATCAGCACTCCAGGCACGGACACGAGCGCGTACAAC GCTGGTAGCGGGAATGCGAACGAGGCATCACTTGCGGCGCGCTACAAGACGGCGGGCCTG AGCACCGGCCACTCCTACTCGGTGCTGATGGTGCGCCAGTTTGTCATTCCGCGAGTGAAG CTGCTGAAGATACGCAACCCGTGGGGAAGCGGTGACGAGTGGACCGGCGCATGGGGCAAG AACAGCACCGGGTGGCAGAAGCACTCCTTGGTGCGCCGGTCGTGCAAGCCGAGCAAGGTG AGCGATGGCACTTTCTGGATGGAGTGGAGGGACGCGGTGCAGTTCTTTGAGGGTGGCGGG GTCTGCATGGTGAAGAAGGCCTGGTACCAGTATCGCTTCCCGGGCCAGTTCATTGGCATA ATCCCGTCCGTCGTGCTAAAGATCGAACTCAGGAAGAAGCAGAAACTACTCTTCACCCTG TCACAGAAGGACCGCCGCCTGCAGAACCCCGACGACCCGGATCAGCTGTACAAGGGGCTG CTTATCTCCGTCACGGGGCACAACGCGCAGAAGGGCACGCAGCAGATTGTGGCCCTCAGC ACCGATAACCCCGAGGTGCATCCACCAGAGAAGTACGAGTACATTGTTGCCCGCGACGTT GGCCTCGAGCTCGAGCTCGACCCCACAAAAGGCCCCTTCTACGTCATTCCGCGCATCATG ACGACGAACCAAAACGGCCCGAAGGACTTCACACTGGGCATGCTGGCACCCAACAAGTCA ACCGCAAGAGGACTGCGGGTGTCTTTTGTACACCTGCCCGACACGTGCCCGACGCTCCGC AACGTGGTGTCATTCCCAATGAACGGGGAGGCGGCGACACATGTGCGATTTCAGTACAAG AAGCGCGGCGGTGCGCCCCGCGTAAAGGCGGGCATCACCGTCTTTGACGCCACCCACGTG ACGGAGACGTACCTCCACCCCCAATAA
  • Download Fasta

  • Fasta :-

    MALCGGSRTKSKAREHDDQRKVHDFKYGGPAVTGDCYPLFEDGRCYRVEVDRHKWFLYND SLDMEMHVSFTFQKTTAVYKTEHGRTTVRKTPTGGTQCSVVVYPLETLPYVKVTKRTQIL YSAACVSRDLAPGYIEKVNREAKAKCMHETQKVAGVAGVSHNEEEILCRCRKSKILYIDM GFPPSEAALKRPHDKQSVASMHAIAWRRPQDYLPAIAHEEIKLFRHGVSAAGIGQGHLGD CWLMCSIAVVAESTTMVKDIFRHPVSQSRRKKEERAGGYRVCISKNGWFHHIIVDSYLPT YNGVVYFARSTGDPYELWVSLLEKAYAKLQGSYASIVGGNPLHALQDLTGFPVYSFTNTW RAAANEEAVASQFFKDLLRYRKNGYLISISTPGTDTSAYNAGSGNANEASLAARYKTAGL STGHSYSVLMVRQFVIPRVKLLKIRNPWGSGDEWTGAWGKNSTGWQKHSLVRRSCKPSKV SDGTFWMEWRDAVQFFEGGGVCMVKKAWYQYRFPGQFIGIIPSVVLKIELRKKQKLLFTL SQKDRRLQNPDDPDQLYKGLLISVTGHNAQKGTQQIVALSTDNPEVHPPEKYEYIVARDV GLELELDPTKGPFYVIPRIMTTNQNGPKDFTLGMLAPNKSTARGLRVSFVHLPDTCPTLR NVVSFPMNGEAATHVRFQYKKRGGAPRVKAGITVFDATHVTETYLHPQ

  • title: catalytic site
  • coordinates: C241,H424,N446
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.0460c474 SLVRRSCKPS0.997unspLmxM.30.0460c474 SLVRRSCKPS0.997unspLmxM.30.0460c474 SLVRRSCKPS0.997unspLmxM.30.0460c87 THGRTTVRKT0.996unspLmxM.30.0460c310 SYFARSTGDP0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India