LmxM.30.2000 | metallo-peptidase, Clan MA(M), Family M8

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.2000SP0.0157730.9833860.000841CS pos: 28-29. TVA-AP. Pr: 0.5534
No Results

  • Fasta :-

    >LmxM.30.2000 MSHVPAALWRIALWLSALLIYAAFTTVAAPSSCGHSQIVHKQGDAPLSYTALRNTGNGLR YQVETDLKRWNGSATAEQRAVEPQATVTISSDREDSEWAPIRIAVFVPDLEDESKYCTAI GQMRPDSSGSLVPCTSNADLLTDAKRAVLINSILPQAVSMHAQRLKVRRLAASTSIVVNS MPGSYCGSFTVPTAHRTTGVPDADFIVYVAAGPTSTPKSFMAWALACQYYPNTATITSRP AVGAMYFNPRYLPTSVGETQEQIDRYGGNPSGSTNSLRRVAAHELLHALGFTSSIFKARG MFAIVPSLRGKRNVPVLNSSAVRAAAKAMYGISDTEVFYGAELEDQGEPGTSLSHWKRRA AKDELMAPVLSLARYSALSLAALEDMGFYKVDFRKAEPVALGATAGGKLFTVPCLTDGAS NTPTVFCDSLSSSVRSCTADRLSIGRCALTTYSSALPRYAQYFPDQPTLGGSLSHSDYCP VIQPLSNTACSGGSLGAMPGSITGDSARCFDADNLLVKFTLTQPGAVCAKVHCSSASRTY EVLVIGANSWLSCGAGGTGVTVQPAVSSPNVFVEGGFIACPPYDDVCYANPVAFAEVEAA ATTTTVSPSAATASTHGLVVSGLVAVAVLLGACIC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/445 Sequence name : 445 Sequence length : 635 VALUES OF COMPUTED PARAMETERS Coef20 : 4.851 CoefTot : -0.568 ChDiff : 0 ZoneTo : 63 KR : 4 DE : 1 CleavSite : 62 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.159 2.765 0.651 0.837 MesoH : 0.670 0.957 0.052 0.425 MuHd_075 : 23.798 22.134 9.270 6.402 MuHd_095 : 31.712 24.199 8.118 6.869 MuHd_100 : 30.304 19.860 7.327 6.181 MuHd_105 : 31.855 19.707 8.377 6.868 Hmax_075 : 9.567 15.167 4.548 5.378 Hmax_095 : 13.475 13.562 2.463 4.611 Hmax_100 : 10.300 25.700 1.539 3.810 Hmax_105 : 11.667 20.037 1.738 4.293 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4571 0.5429 DFMC : 0.5419 0.4581
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 635 LmxM.30.2000 MSHVPAALWRIALWLSALLIYAAFTTVAAPSSCGHSQIVHKQGDAPLSYTALRNTGNGLRYQVETDLKRWNGSATAEQRA 80 VEPQATVTISSDREDSEWAPIRIAVFVPDLEDESKYCTAIGQMRPDSSGSLVPCTSNADLLTDAKRAVLINSILPQAVSM 160 HAQRLKVRRLAASTSIVVNSMPGSYCGSFTVPTAHRTTGVPDADFIVYVAAGPTSTPKSFMAWALACQYYPNTATITSRP 240 AVGAMYFNPRYLPTSVGETQEQIDRYGGNPSGSTNSLRRVAAHELLHALGFTSSIFKARGMFAIVPSLRGKRNVPVLNSS 320 AVRAAAKAMYGISDTEVFYGAELEDQGEPGTSLSHWKRRAAKDELMAPVLSLARYSALSLAALEDMGFYKVDFRKAEPVA 400 LGATAGGKLFTVPCLTDGASNTPTVFCDSLSSSVRSCTADRLSIGRCALTTYSSALPRYAQYFPDQPTLGGSLSHSDYCP 480 VIQPLSNTACSGGSLGAMPGSITGDSARCFDADNLLVKFTLTQPGAVCAKVHCSSASRTYEVLVIGANSWLSCGAGGTGV 560 TVQPAVSSPNVFVEGGFIACPPYDDVCYANPVAFAEVEAAATTTTVSPSAATASTHGLVVSGLVAVAVLLGACIC 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.2000 10 VPAALWR|IA 0.091 . LmxM.30.2000 41 HSQIVHK|QG 0.074 . LmxM.30.2000 53 LSYTALR|NT 0.141 . LmxM.30.2000 60 NTGNGLR|YQ 0.064 . LmxM.30.2000 68 QVETDLK|RW 0.056 . LmxM.30.2000 69 VETDLKR|WN 0.144 . LmxM.30.2000 79 SATAEQR|AV 0.169 . LmxM.30.2000 93 VTISSDR|ED 0.081 . LmxM.30.2000 102 SEWAPIR|IA 0.109 . LmxM.30.2000 115 DLEDESK|YC 0.074 . LmxM.30.2000 124 TAIGQMR|PD 0.094 . LmxM.30.2000 145 DLLTDAK|RA 0.056 . LmxM.30.2000 146 LLTDAKR|AV 0.157 . LmxM.30.2000 164 VSMHAQR|LK 0.082 . LmxM.30.2000 166 MHAQRLK|VR 0.061 . LmxM.30.2000 168 AQRLKVR|RL 0.098 . LmxM.30.2000 169 QRLKVRR|LA 0.144 . LmxM.30.2000 196 TVPTAHR|TT 0.092 . LmxM.30.2000 218 GPTSTPK|SF 0.081 . LmxM.30.2000 239 TATITSR|PA 0.100 . LmxM.30.2000 250 AMYFNPR|YL 0.107 . LmxM.30.2000 265 TQEQIDR|YG 0.081 . LmxM.30.2000 278 GSTNSLR|RV 0.141 . LmxM.30.2000 279 STNSLRR|VA 0.181 . LmxM.30.2000 297 FTSSIFK|AR 0.064 . LmxM.30.2000 299 SSIFKAR|GM 0.192 . LmxM.30.2000 309 AIVPSLR|GK 0.084 . LmxM.30.2000 311 VPSLRGK|RN 0.076 . LmxM.30.2000 312 PSLRGKR|NV 0.451 . LmxM.30.2000 323 LNSSAVR|AA 0.144 . LmxM.30.2000 327 AVRAAAK|AM 0.074 . LmxM.30.2000 357 TSLSHWK|RR 0.065 . LmxM.30.2000 358 SLSHWKR|RA 0.378 . LmxM.30.2000 359 LSHWKRR|AA 0.466 . LmxM.30.2000 362 WKRRAAK|DE 0.184 . LmxM.30.2000 374 PVLSLAR|YS 0.072 . LmxM.30.2000 390 EDMGFYK|VD 0.062 . LmxM.30.2000 394 FYKVDFR|KA 0.105 . LmxM.30.2000 395 YKVDFRK|AE 0.088 . LmxM.30.2000 408 GATAGGK|LF 0.055 . LmxM.30.2000 435 SLSSSVR|SC 0.187 . LmxM.30.2000 441 RSCTADR|LS 0.071 . LmxM.30.2000 446 DRLSIGR|CA 0.086 . LmxM.30.2000 458 YSSALPR|YA 0.145 . LmxM.30.2000 508 ITGDSAR|CF 0.121 . LmxM.30.2000 518 ADNLLVK|FT 0.075 . LmxM.30.2000 530 PGAVCAK|VH 0.062 . LmxM.30.2000 538 HCSSASR|TY 0.090 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.2000 ATGTCGCACGTGCCCGCCGCGCTGTGGCGTATCGCGTTGTGGCTGAGTGCTCTCCTCATT TACGCAGCTTTCACGACAGTCGCGGCCCCGTCCTCGTGCGGGCACAGCCAGATCGTCCAC AAGCAAGGTGACGCCCCTCTCTCATACACAGCGCTGCGCAACACCGGCAACGGCCTGCGC TATCAGGTCGAAACGGACCTCAAGCGATGGAATGGCTCAGCCACCGCCGAACAGCGTGCC GTCGAGCCACAGGCCACCGTCACAATCAGCAGCGACAGAGAGGACTCGGAGTGGGCCCCC ATCCGCATTGCTGTCTTCGTGCCCGATCTGGAGGACGAATCGAAATACTGCACGGCCATT GGTCAGATGCGCCCCGATTCCAGCGGCTCCCTGGTGCCGTGCACCAGCAACGCTGATCTC TTGACGGATGCGAAAAGGGCCGTGCTGATCAACTCTATACTACCCCAGGCAGTCAGCATG CACGCGCAGCGACTGAAGGTGCGTCGGCTGGCAGCCAGCACCTCCATCGTCGTGAACTCC ATGCCGGGGTCATACTGCGGCTCCTTCACCGTCCCGACAGCGCACCGGACAACGGGTGTG CCGGACGCAGATTTTATCGTCTACGTGGCAGCGGGTCCGACATCTACTCCGAAGAGCTTC ATGGCGTGGGCTCTTGCTTGCCAGTATTACCCCAACACGGCCACAATCACGAGTCGCCCA GCTGTGGGGGCGATGTACTTCAACCCGCGCTACCTGCCGACCTCGGTAGGGGAAACGCAG GAGCAAATTGACCGTTACGGAGGCAACCCGTCTGGCAGCACGAATAGTCTTCGCCGCGTC GCCGCCCATGAACTGCTGCACGCGCTCGGCTTCACCTCAAGCATCTTCAAGGCACGCGGC ATGTTTGCCATCGTCCCGTCTCTGCGTGGAAAAAGGAACGTACCGGTGCTGAACTCATCG GCTGTGCGCGCGGCTGCCAAGGCCATGTACGGCATCTCTGACACAGAGGTGTTTTATGGC GCCGAGCTGGAGGATCAAGGCGAGCCGGGCACATCTCTTTCTCACTGGAAGCGCCGCGCC GCGAAGGATGAACTTATGGCGCCTGTGCTCAGTCTGGCGCGCTACAGCGCCTTGTCGCTC GCTGCCCTGGAGGATATGGGCTTCTATAAAGTCGACTTCCGTAAGGCGGAGCCTGTTGCC CTCGGCGCCACCGCAGGGGGTAAGCTCTTCACAGTGCCGTGCTTGACGGACGGCGCCTCC AACACCCCTACGGTGTTCTGCGACAGCCTCAGCTCCTCGGTGCGCAGCTGCACGGCGGAC CGGTTGAGCATTGGTCGGTGCGCCCTCACTACCTACTCCTCGGCTCTGCCAAGGTATGCC CAGTACTTCCCTGATCAACCGACCCTCGGTGGCTCTCTGTCGCACAGCGACTACTGCCCC GTGATACAGCCCCTCTCCAACACCGCGTGCAGTGGCGGCTCGCTAGGTGCGATGCCGGGC AGCATCACTGGTGACAGCGCGCGCTGCTTCGACGCAGACAATCTGCTGGTGAAGTTCACG CTCACTCAGCCTGGTGCCGTCTGTGCCAAGGTACACTGCAGCAGCGCATCTCGCACCTAT GAGGTGCTCGTGATTGGCGCGAACAGCTGGCTTTCGTGCGGCGCCGGTGGCACTGGGGTG ACGGTGCAGCCGGCAGTGAGTAGCCCCAACGTGTTCGTGGAGGGCGGGTTTATTGCCTGT CCGCCCTACGACGATGTGTGCTACGCGAACCCGGTCGCCTTCGCGGAAGTGGAAGCGGCC GCCACCACCACAACAGTGTCACCAAGCGCGGCTACAGCTTCCACCCATGGATTGGTCGTT AGCGGCCTTGTCGCTGTCGCTGTGCTGCTCGGTGCGTGCATCTGCTAA
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  • Fasta :-

    MSHVPAALWRIALWLSALLIYAAFTTVAAPSSCGHSQIVHKQGDAPLSYTALRNTGNGLR YQVETDLKRWNGSATAEQRAVEPQATVTISSDREDSEWAPIRIAVFVPDLEDESKYCTAI GQMRPDSSGSLVPCTSNADLLTDAKRAVLINSILPQAVSMHAQRLKVRRLAASTSIVVNS MPGSYCGSFTVPTAHRTTGVPDADFIVYVAAGPTSTPKSFMAWALACQYYPNTATITSRP AVGAMYFNPRYLPTSVGETQEQIDRYGGNPSGSTNSLRRVAAHELLHALGFTSSIFKARG MFAIVPSLRGKRNVPVLNSSAVRAAAKAMYGISDTEVFYGAELEDQGEPGTSLSHWKRRA AKDELMAPVLSLARYSALSLAALEDMGFYKVDFRKAEPVALGATAGGKLFTVPCLTDGAS NTPTVFCDSLSSSVRSCTADRLSIGRCALTTYSSALPRYAQYFPDQPTLGGSLSHSDYCP VIQPLSNTACSGGSLGAMPGSITGDSARCFDADNLLVKFTLTQPGAVCAKVHCSSASRTY EVLVIGANSWLSCGAGGTGVTVQPAVSSPNVFVEGGFIACPPYDDVCYANPVAFAEVEAA ATTTTVSPSAATASTHGLVVSGLVAVAVLLGACIC

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.200091 SVTISSDRED0.994unspLmxM.30.2000255 SYLPTSVGET0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India