LmxM.30.2260 | aminopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.30.2260OTHER0.9952200.0002810.004499
No Results

  • Fasta :-

    >LmxM.30.2260 MDSSAYIWNPVQCTVQLVFSRPSSGAAIRAGSAYHGTSIIRYRREPYRDTADSAAGTASS SAASPSEGNSEYEDFLRHRRVIAEKNALHLHALTTAGGIYKDARVLDVQSYQVRCVSISA DAGAAVLRVVSVEQEDAGAASAGSSTSGGAGKRKGSSKVWKKGGTDVAEHDAQTSGDSPT PAAVDWGSKLILFEGAGSLPPFSEVDLTTQFIGRVQSFDCGGIYAAGGISSNPSTEDVPL LTHFEVRFARCAFPAPDDPQYRLEWQLKSIQVPSSFRTILTNGEERGRKELAAQQAVQVS FAPCGPLPAYVFSFACFPGIAEVESMSAAGDGLEVVEGSLDVPKFAGDIVSGLSDTSNLS HTPVPVRVLARRQARIATATLERVLRLTIESVIALQHLFQCPLPLLQCEHLDVLLGPTMP YISGMEHHCSIILNEAIYQPGRKTAAAGGGSAHSTAEVEQTELIVHELTHHWVGNALGLP FAVKEGICQVIEQCVGDTLLGKPMRTYKADSSGSAKPESSSPSSSTAKPPKSTIRASEKG HEFTGTSYQHALSAIKRLVAEHGFDRFVACLRQLMHVHVVVPAIAVEESGGIQVLRYVRS GIATPPYLSTEQFLRNVESAL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/504 Sequence name : 504 Sequence length : 621 VALUES OF COMPUTED PARAMETERS Coef20 : 4.135 CoefTot : -0.362 ChDiff : -9 ZoneTo : 44 KR : 5 DE : 1 CleavSite : 45 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.724 1.512 0.365 0.632 MesoH : 0.064 0.592 -0.162 0.338 MuHd_075 : 24.514 16.677 7.222 5.341 MuHd_095 : 23.969 19.941 5.805 7.065 MuHd_100 : 27.198 20.696 7.821 5.630 MuHd_105 : 31.353 23.237 8.558 6.473 Hmax_075 : 14.800 14.400 3.990 4.580 Hmax_095 : 8.200 14.700 3.359 5.819 Hmax_100 : 16.800 17.300 2.813 5.970 Hmax_105 : 16.300 17.100 3.205 5.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2563 0.7437 DFMC : 0.2957 0.7043 This protein is probably imported in mitochondria. f(Ser) = 0.1591 f(Arg) = 0.1136 CMi = 0.69444 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 621 LmxM.30.2260 MDSSAYIWNPVQCTVQLVFSRPSSGAAIRAGSAYHGTSIIRYRREPYRDTADSAAGTASSSAASPSEGNSEYEDFLRHRR 80 VIAEKNALHLHALTTAGGIYKDARVLDVQSYQVRCVSISADAGAAVLRVVSVEQEDAGAASAGSSTSGGAGKRKGSSKVW 160 KKGGTDVAEHDAQTSGDSPTPAAVDWGSKLILFEGAGSLPPFSEVDLTTQFIGRVQSFDCGGIYAAGGISSNPSTEDVPL 240 LTHFEVRFARCAFPAPDDPQYRLEWQLKSIQVPSSFRTILTNGEERGRKELAAQQAVQVSFAPCGPLPAYVFSFACFPGI 320 AEVESMSAAGDGLEVVEGSLDVPKFAGDIVSGLSDTSNLSHTPVPVRVLARRQARIATATLERVLRLTIESVIALQHLFQ 400 CPLPLLQCEHLDVLLGPTMPYISGMEHHCSIILNEAIYQPGRKTAAAGGGSAHSTAEVEQTELIVHELTHHWVGNALGLP 480 FAVKEGICQVIEQCVGDTLLGKPMRTYKADSSGSAKPESSSPSSSTAKPPKSTIRASEKGHEFTGTSYQHALSAIKRLVA 560 EHGFDRFVACLRQLMHVHVVVPAIAVEESGGIQVLRYVRSGIATPPYLSTEQFLRNVESAL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.30.2260 21 VQLVFSR|PS 0.084 . LmxM.30.2260 29 SSGAAIR|AG 0.130 . LmxM.30.2260 41 HGTSIIR|YR 0.072 . LmxM.30.2260 43 TSIIRYR|RE 0.077 . LmxM.30.2260 44 SIIRYRR|EP 0.287 . LmxM.30.2260 48 YRREPYR|DT 0.167 . LmxM.30.2260 77 EYEDFLR|HR 0.073 . LmxM.30.2260 79 EDFLRHR|RV 0.118 . LmxM.30.2260 80 DFLRHRR|VI 0.291 . LmxM.30.2260 85 RRVIAEK|NA 0.064 . LmxM.30.2260 101 TAGGIYK|DA 0.086 . LmxM.30.2260 104 GIYKDAR|VL 0.113 . LmxM.30.2260 114 VQSYQVR|CV 0.182 . LmxM.30.2260 128 AGAAVLR|VV 0.144 . LmxM.30.2260 152 TSGGAGK|RK 0.073 . LmxM.30.2260 153 SGGAGKR|KG 0.137 . LmxM.30.2260 154 GGAGKRK|GS 0.137 . LmxM.30.2260 158 KRKGSSK|VW 0.093 . LmxM.30.2260 161 GSSKVWK|KG 0.100 . LmxM.30.2260 162 SSKVWKK|GG 0.132 . LmxM.30.2260 189 AVDWGSK|LI 0.057 . LmxM.30.2260 214 TTQFIGR|VQ 0.082 . LmxM.30.2260 247 LTHFEVR|FA 0.176 . LmxM.30.2260 250 FEVRFAR|CA 0.452 . LmxM.30.2260 262 PDDPQYR|LE 0.080 . LmxM.30.2260 268 RLEWQLK|SI 0.073 . LmxM.30.2260 277 QVPSSFR|TI 0.078 . LmxM.30.2260 286 LTNGEER|GR 0.080 . LmxM.30.2260 288 NGEERGR|KE 0.075 . LmxM.30.2260 289 GEERGRK|EL 0.230 . LmxM.30.2260 344 GSLDVPK|FA 0.119 . LmxM.30.2260 367 HTPVPVR|VL 0.073 . LmxM.30.2260 371 PVRVLAR|RQ 0.087 . LmxM.30.2260 372 VRVLARR|QA 0.210 . LmxM.30.2260 375 LARRQAR|IA 0.487 . LmxM.30.2260 383 ATATLER|VL 0.073 . LmxM.30.2260 386 TLERVLR|LT 0.234 . LmxM.30.2260 442 AIYQPGR|KT 0.100 . LmxM.30.2260 443 IYQPGRK|TA 0.106 . LmxM.30.2260 484 GLPFAVK|EG 0.057 . LmxM.30.2260 502 GDTLLGK|PM 0.060 . LmxM.30.2260 505 LLGKPMR|TY 0.087 . LmxM.30.2260 508 KPMRTYK|AD 0.180 . LmxM.30.2260 516 DSSGSAK|PE 0.080 . LmxM.30.2260 528 PSSSTAK|PP 0.069 . LmxM.30.2260 531 STAKPPK|ST 0.100 . LmxM.30.2260 535 PPKSTIR|AS 0.131 . LmxM.30.2260 539 TIRASEK|GH 0.077 . LmxM.30.2260 556 HALSAIK|RL 0.054 . LmxM.30.2260 557 ALSAIKR|LV 0.326 . LmxM.30.2260 566 AEHGFDR|FV 0.130 . LmxM.30.2260 572 RFVACLR|QL 0.087 . LmxM.30.2260 596 GGIQVLR|YV 0.207 . LmxM.30.2260 599 QVLRYVR|SG 0.217 . LmxM.30.2260 615 STEQFLR|NV 0.137 . ____________________________^_________________

  • Fasta :-

    >LmxM.30.2260 ATGGACTCATCGGCGTACATATGGAACCCTGTCCAGTGCACGGTGCAGCTCGTCTTCAGC CGCCCCAGCAGCGGCGCGGCGATTCGAGCTGGCTCCGCGTACCACGGCACATCCATCATC CGCTACCGGCGTGAGCCGTATCGTGACACAGCAGACAGCGCCGCGGGAACTGCTAGCTCT TCTGCAGCTTCTCCCTCTGAAGGCAACTCCGAGTACGAAGACTTCCTGCGACACCGTCGC GTGATAGCCGAGAAAAACGCCCTGCATCTTCACGCACTCACAACCGCTGGCGGTATATAC AAGGACGCCAGGGTGCTCGATGTCCAGTCCTATCAGGTGAGGTGTGTCTCCATCTCTGCT GACGCGGGCGCGGCAGTGCTCAGGGTTGTGTCCGTCGAGCAGGAGGATGCTGGAGCGGCA TCAGCGGGCAGCAGCACCAGTGGTGGAGCCGGGAAGAGGAAGGGAAGCTCCAAGGTTTGG AAAAAGGGCGGCACGGATGTCGCGGAACACGATGCACAGACATCTGGCGACTCGCCCACA CCCGCCGCAGTGGACTGGGGATCGAAGCTGATCCTATTCGAAGGCGCCGGCAGCTTACCC CCGTTCTCTGAGGTGGATCTAACAACTCAGTTTATTGGCAGAGTTCAGTCTTTCGACTGT GGTGGAATCTACGCCGCCGGTGGGATCAGCAGTAACCCCAGCACCGAAGATGTACCTCTA CTCACACATTTTGAGGTGCGCTTCGCCCGGTGCGCGTTTCCGGCCCCCGACGACCCGCAG TACCGCCTCGAATGGCAGCTCAAGAGTATCCAGGTGCCTAGTAGCTTCCGCACAATCTTG ACGAACGGAGAGGAGCGTGGCCGCAAAGAACTGGCGGCGCAGCAGGCGGTGCAGGTGAGC TTTGCCCCGTGCGGCCCGCTACCCGCGTACGTCTTCTCGTTTGCGTGCTTTCCAGGCATT GCTGAGGTGGAGAGCATGTCCGCAGCTGGCGATGGGCTGGAGGTGGTAGAGGGAAGCTTG GACGTCCCAAAGTTTGCTGGTGACATCGTGAGCGGCCTCAGTGACACCAGTAACCTGTCC CACACACCCGTTCCTGTGCGTGTACTGGCGCGACGACAGGCGCGAATCGCTACGGCAACC CTCGAGCGCGTCTTACGCCTCACCATCGAGTCTGTGATAGCGCTCCAGCACCTCTTTCAG TGTCCACTGCCGCTCCTTCAGTGCGAGCACCTGGACGTCCTCCTTGGTCCAACAATGCCG TATATCTCCGGTATGGAGCACCATTGCTCGATTATTCTCAACGAGGCCATCTACCAGCCA GGCAGGAAAACCGCCGCCGCCGGTGGAGGGAGTGCGCACAGTACCGCCGAGGTGGAACAA ACAGAGCTCATTGTGCACGAGCTGACACACCACTGGGTCGGAAACGCCCTGGGGCTGCCG TTTGCCGTGAAGGAGGGTATCTGCCAGGTGATCGAGCAGTGTGTCGGCGACACGCTACTA GGCAAGCCCATGCGCACGTACAAGGCAGACAGCAGCGGTAGCGCAAAGCCCGAGAGCTCC TCCCCTTCCTCCTCGACTGCGAAGCCGCCGAAGAGCACCATCCGGGCCTCTGAGAAAGGC CACGAGTTCACAGGGACCTCGTACCAGCACGCACTCAGTGCCATTAAGCGGTTGGTCGCC GAGCACGGGTTTGACCGCTTTGTCGCGTGCCTGCGACAGCTCATGCACGTGCACGTCGTT GTTCCAGCCATCGCAGTCGAGGAGAGCGGCGGAATCCAGGTGCTGCGGTACGTCCGTTCT GGCATCGCCACCCCACCGTACCTAAGTACGGAGCAGTTCCTGCGTAACGTGGAGAGCGCG TTGTGA
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  • Fasta :-

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.30.2260131 SLRVVSVEQE0.992unspLmxM.30.2260131 SLRVVSVEQE0.992unspLmxM.30.2260131 SLRVVSVEQE0.992unspLmxM.30.2260156 SKRKGSSKVW0.995unspLmxM.30.2260234 SSSNPSTEDV0.997unspLmxM.30.2260511 SYKADSSGSA0.995unspLmxM.30.2260521 SPESSSPSSS0.993unspLmxM.30.2260532 SKPPKSTIRA0.991unspLmxM.30.2260537 STIRASEKGH0.998unspLmxM.30.226064 SSSAASPSEG0.997unspLmxM.30.226070 SSEGNSEYED0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India