LmxM.31.1250 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.31.1250OTHER0.6513720.3404230.008205
No Results

  • Fasta :-

    >LmxM.31.1250 MNNSNFCFMNSMLQALMFIPPFAQLSVSVSCDAQVRQLCPTLATLGKWTLQYWKPGFTRL PMIAPMLMPRMPAGAKSSNSGAPRSAVIPTSQRILDGSVQEDAQEFLQKLLERVYEELVS LEEAFQQADASEAATESDMGSNAPAVAASSASGDDRTDARDDATTSTFQKKGWTFVKGKE KLAVREYEDAQGQSKLMASIFGGTLESHLQGKQRQRNRVSVLIEKYYCLPVDVGFAPECT VEQALERTFMTERIYDSEHEQHLKKTLRLGHLPSILFLQLRRWAVTREGELVKLDNVVRI KRTLLIPRTICGDETLGNTERTYRLLSVVCHRGDAVSRGHYVTYLVHHAATPAVLKVQSS DPGNKDTAILRSPPDTATVILCNDANISVCPAKNMEKETMYFLVYQKTS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/384 Sequence name : 384 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 4.283 CoefTot : -1.580 ChDiff : 1 ZoneTo : 95 KR : 8 DE : 1 CleavSite : 103 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.682 1.471 0.230 0.568 MesoH : 0.248 0.431 -0.216 0.249 MuHd_075 : 31.764 19.515 8.245 6.965 MuHd_095 : 34.125 26.940 10.065 8.458 MuHd_100 : 32.647 27.167 10.860 7.945 MuHd_105 : 30.392 24.928 11.356 6.923 Hmax_075 : 8.925 17.800 2.955 3.380 Hmax_095 : 14.000 19.500 4.823 5.127 Hmax_100 : 15.200 17.000 4.473 5.120 Hmax_105 : 13.300 20.650 3.740 5.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1231 0.8769 DFMC : 0.0305 0.9695 This protein is probably imported in mitochondria. f(Ser) = 0.1053 f(Arg) = 0.0526 CMi = 0.73260 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 LmxM.31.1250 MNNSNFCFMNSMLQALMFIPPFAQLSVSVSCDAQVRQLCPTLATLGKWTLQYWKPGFTRLPMIAPMLMPRMPAGAKSSNS 80 GAPRSAVIPTSQRILDGSVQEDAQEFLQKLLERVYEELVSLEEAFQQADASEAATESDMGSNAPAVAASSASGDDRTDAR 160 DDATTSTFQKKGWTFVKGKEKLAVREYEDAQGQSKLMASIFGGTLESHLQGKQRQRNRVSVLIEKYYCLPVDVGFAPECT 240 VEQALERTFMTERIYDSEHEQHLKKTLRLGHLPSILFLQLRRWAVTREGELVKLDNVVRIKRTLLIPRTICGDETLGNTE 320 RTYRLLSVVCHRGDAVSRGHYVTYLVHHAATPAVLKVQSSDPGNKDTAILRSPPDTATVILCNDANISVCPAKNMEKETM 400 YFLVYQKTS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.31.1250 36 SCDAQVR|QL 0.105 . LmxM.31.1250 47 TLATLGK|WT 0.069 . LmxM.31.1250 54 WTLQYWK|PG 0.062 . LmxM.31.1250 59 WKPGFTR|LP 0.086 . LmxM.31.1250 70 APMLMPR|MP 0.088 . LmxM.31.1250 76 RMPAGAK|SS 0.075 . LmxM.31.1250 84 SNSGAPR|SA 0.209 . LmxM.31.1250 93 VIPTSQR|IL 0.085 . LmxM.31.1250 109 AQEFLQK|LL 0.074 . LmxM.31.1250 113 LQKLLER|VY 0.085 . LmxM.31.1250 156 SASGDDR|TD 0.093 . LmxM.31.1250 160 DDRTDAR|DD 0.098 . LmxM.31.1250 170 TTSTFQK|KG 0.073 . LmxM.31.1250 171 TSTFQKK|GW 0.137 . LmxM.31.1250 177 KGWTFVK|GK 0.071 . LmxM.31.1250 179 WTFVKGK|EK 0.069 . LmxM.31.1250 181 FVKGKEK|LA 0.063 . LmxM.31.1250 185 KEKLAVR|EY 0.113 . LmxM.31.1250 195 DAQGQSK|LM 0.062 . LmxM.31.1250 212 ESHLQGK|QR 0.068 . LmxM.31.1250 214 HLQGKQR|QR 0.101 . LmxM.31.1250 216 QGKQRQR|NR 0.080 . LmxM.31.1250 218 KQRQRNR|VS 0.090 . LmxM.31.1250 225 VSVLIEK|YY 0.058 . LmxM.31.1250 247 VEQALER|TF 0.078 . LmxM.31.1250 253 RTFMTER|IY 0.085 . LmxM.31.1250 264 EHEQHLK|KT 0.062 . LmxM.31.1250 265 HEQHLKK|TL 0.091 . LmxM.31.1250 268 HLKKTLR|LG 0.068 . LmxM.31.1250 281 ILFLQLR|RW 0.083 . LmxM.31.1250 282 LFLQLRR|WA 0.116 . LmxM.31.1250 287 RRWAVTR|EG 0.102 . LmxM.31.1250 293 REGELVK|LD 0.059 . LmxM.31.1250 299 KLDNVVR|IK 0.078 . LmxM.31.1250 301 DNVVRIK|RT 0.061 . LmxM.31.1250 302 NVVRIKR|TL 0.314 . LmxM.31.1250 308 RTLLIPR|TI 0.088 . LmxM.31.1250 321 TLGNTER|TY 0.071 . LmxM.31.1250 324 NTERTYR|LL 0.227 . LmxM.31.1250 332 LSVVCHR|GD 0.100 . LmxM.31.1250 338 RGDAVSR|GH 0.080 . LmxM.31.1250 356 ATPAVLK|VQ 0.056 . LmxM.31.1250 365 SSDPGNK|DT 0.066 . LmxM.31.1250 371 KDTAILR|SP 0.086 . LmxM.31.1250 393 ISVCPAK|NM 0.081 . LmxM.31.1250 397 PAKNMEK|ET 0.061 . LmxM.31.1250 407 YFLVYQK|TS 0.056 . ____________________________^_________________

  • Fasta :-

    >LmxM.31.1250 ATGAATAACAGCAACTTCTGCTTCATGAATTCGATGCTGCAGGCACTCATGTTTATTCCC CCCTTTGCGCAACTGTCCGTCTCCGTCAGCTGTGATGCGCAGGTACGCCAGCTGTGCCCC ACACTGGCGACTCTTGGAAAGTGGACACTTCAGTACTGGAAGCCCGGTTTCACGCGGCTA CCGATGATAGCCCCAATGTTGATGCCACGCATGCCTGCGGGCGCCAAGAGCAGTAATAGC GGCGCTCCTCGGTCGGCCGTGATCCCCACGTCGCAGCGGATCCTTGACGGCTCTGTGCAG GAGGACGCGCAGGAATTTCTCCAGAAGTTGCTGGAGCGTGTGTATGAAGAGCTGGTGAGT CTCGAGGAAGCTTTTCAGCAGGCCGACGCGTCTGAGGCAGCTACGGAGAGCGATATGGGG TCGAATGCCCCTGCTGTCGCGGCGAGCAGCGCCAGTGGTGATGACCGCACCGATGCTCGA GACGACGCCACCACCTCGACCTTCCAGAAGAAGGGCTGGACGTTTGTGAAGGGAAAGGAG AAGCTGGCGGTGCGGGAGTACGAGGATGCGCAAGGGCAGTCAAAACTAATGGCCAGTATC TTTGGTGGCACGCTGGAGAGCCACTTGCAGGGGAAGCAGCGCCAGCGCAACCGTGTGTCG GTGCTCATCGAGAAGTACTACTGTCTCCCCGTCGACGTTGGCTTTGCGCCCGAGTGTACG GTTGAGCAAGCTCTCGAGCGGACCTTCATGACAGAGCGCATCTATGACAGCGAGCATGAG CAGCACCTCAAGAAGACGCTCCGCCTCGGTCATCTGCCCTCTATTCTCTTTCTGCAGCTG CGCCGCTGGGCCGTGACGCGCGAGGGCGAGCTCGTGAAGCTCGACAACGTTGTGCGTATC AAGCGCACCTTGCTGATTCCCCGCACCATCTGCGGTGATGAGACCCTGGGCAACACAGAG CGAACGTACCGTCTCTTGTCAGTGGTGTGCCACCGCGGTGACGCCGTTAGTCGGGGGCAC TATGTCACCTACTTGGTGCACCACGCCGCGACCCCAGCGGTCCTGAAGGTGCAGTCGAGT GATCCGGGCAACAAGGACACTGCGATCCTGCGCTCGCCGCCTGACACGGCGACAGTGATT CTCTGTAATGACGCCAACATTTCTGTGTGTCCAGCAAAGAACATGGAAAAGGAGACCATG TACTTTCTCGTCTACCAAAAGACAAGCTGA
  • Download Fasta

  • Fasta :-

    MNNSNFCFMNSMLQALMFIPPFAQLSVSVSCDAQVRQLCPTLATLGKWTLQYWKPGFTRL PMIAPMLMPRMPAGAKSSNSGAPRSAVIPTSQRILDGSVQEDAQEFLQKLLERVYEELVS LEEAFQQADASEAATESDMGSNAPAVAASSASGDDRTDARDDATTSTFQKKGWTFVKGKE KLAVREYEDAQGQSKLMASIFGGTLESHLQGKQRQRNRVSVLIEKYYCLPVDVGFAPECT VEQALERTFMTERIYDSEHEQHLKKTLRLGHLPSILFLQLRRWAVTREGELVKLDNVVRI KRTLLIPRTICGDETLGNTERTYRLLSVVCHRGDAVSRGHYVTYLVHHAATPAVLKVQSS DPGNKDTAILRSPPDTATVILCNDANISVCPAKNMEKETMYFLVYQKTS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.31.1250372 SAILRSPPDT0.996unspLmxM.31.1250372 SAILRSPPDT0.996unspLmxM.31.1250372 SAILRSPPDT0.996unspLmxM.31.1250120 SEELVSLEEA0.993unspLmxM.31.1250327 SYRLLSVVCH0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India