LmxM.31.1310 | WLM domain containing protein, putative

  • Computed_GO_Component_IDs:        

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  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

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No Results
No Results

  • Fasta :-

    >LmxM.31.1310 MEHVLHRARVLLPRRGWRVGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFH EVLCTALHEFTHCVHSRHDRSFWNLYYDLVKECEALEITMIQQGMRLYPEIYSAPRSCSG TGSQHSHSGHEGRTAATASSARGGGRRLGNGGTRGGSRGRGGRVSTGSRNVTQTITKTAR AASSCSSSPTSSAAFPGEGRRLGVGGLRQYDAPVDFTPTRGVLRRILADAVERRLVRKPP SPATVPLGSEPLALSVDSGTSPQEDEEQCEVDDDGVPDCVPHSLSGHEDGGGWNCPRCGF RNDDNVIGSCAFCADCNEGDEVNEGEATWIKRPRFDNEHSLLETPTIVASSATASNTMPV QQPKQQQLECTAEEHYIVVSDEDDS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/786 Sequence name : 786 Sequence length : 385 VALUES OF COMPUTED PARAMETERS Coef20 : 4.343 CoefTot : -1.039 ChDiff : -6 ZoneTo : 41 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.012 0.097 0.432 MesoH : -1.114 0.040 -0.436 0.087 MuHd_075 : 55.477 25.064 12.845 12.476 MuHd_095 : 42.483 24.513 11.848 8.997 MuHd_100 : 30.865 20.720 9.003 6.980 MuHd_105 : 31.177 17.293 7.286 6.955 Hmax_075 : 17.500 10.237 3.052 5.574 Hmax_095 : 1.900 12.900 0.366 2.540 Hmax_100 : 2.900 17.100 0.829 3.620 Hmax_105 : -2.300 17.400 -2.169 2.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1986 0.8014 DFMC : 0.2667 0.7333 This protein is probably imported in mitochondria. f(Ser) = 0.0244 f(Arg) = 0.1463 CMi = 0.08873 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 385 LmxM.31.1310 MEHVLHRARVLLPRRGWRVGLIKEFYPRGATLLGLNVNAGSEVCIRFRVPGKKNEFLPFHEVLCTALHEFTHCVHSRHDR 80 SFWNLYYDLVKECEALEITMIQQGMRLYPEIYSAPRSCSGTGSQHSHSGHEGRTAATASSARGGGRRLGNGGTRGGSRGR 160 GGRVSTGSRNVTQTITKTARAASSCSSSPTSSAAFPGEGRRLGVGGLRQYDAPVDFTPTRGVLRRILADAVERRLVRKPP 240 SPATVPLGSEPLALSVDSGTSPQEDEEQCEVDDDGVPDCVPHSLSGHEDGGGWNCPRCGFRNDDNVIGSCAFCADCNEGD 320 EVNEGEATWIKRPRFDNEHSLLETPTIVASSATASNTMPVQQPKQQQLECTAEEHYIVVSDEDDS 400 ...............................................................................P 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.31.1310 7 MEHVLHR|AR 0.074 . LmxM.31.1310 9 HVLHRAR|VL 0.077 . LmxM.31.1310 14 ARVLLPR|RG 0.088 . LmxM.31.1310 15 RVLLPRR|GW 0.134 . LmxM.31.1310 18 LPRRGWR|VG 0.233 . LmxM.31.1310 23 WRVGLIK|EF 0.070 . LmxM.31.1310 28 IKEFYPR|GA 0.106 . LmxM.31.1310 46 GSEVCIR|FR 0.095 . LmxM.31.1310 48 EVCIRFR|VP 0.087 . LmxM.31.1310 52 RFRVPGK|KN 0.069 . LmxM.31.1310 53 FRVPGKK|NE 0.088 . LmxM.31.1310 77 THCVHSR|HD 0.103 . LmxM.31.1310 80 VHSRHDR|SF 0.517 *ProP* LmxM.31.1310 91 LYYDLVK|EC 0.068 . LmxM.31.1310 106 MIQQGMR|LY 0.081 . LmxM.31.1310 116 EIYSAPR|SC 0.138 . LmxM.31.1310 133 HSGHEGR|TA 0.131 . LmxM.31.1310 142 ATASSAR|GG 0.115 . LmxM.31.1310 146 SARGGGR|RL 0.129 . LmxM.31.1310 147 ARGGGRR|LG 0.144 . LmxM.31.1310 154 LGNGGTR|GG 0.110 . LmxM.31.1310 158 GTRGGSR|GR 0.106 . LmxM.31.1310 160 RGGSRGR|GG 0.093 . LmxM.31.1310 163 SRGRGGR|VS 0.403 . LmxM.31.1310 169 RVSTGSR|NV 0.122 . LmxM.31.1310 177 VTQTITK|TA 0.067 . LmxM.31.1310 180 TITKTAR|AA 0.124 . LmxM.31.1310 200 AFPGEGR|RL 0.087 . LmxM.31.1310 201 FPGEGRR|LG 0.123 . LmxM.31.1310 208 LGVGGLR|QY 0.077 . LmxM.31.1310 220 VDFTPTR|GV 0.103 . LmxM.31.1310 224 PTRGVLR|RI 0.074 . LmxM.31.1310 225 TRGVLRR|IL 0.231 . LmxM.31.1310 233 LADAVER|RL 0.076 . LmxM.31.1310 234 ADAVERR|LV 0.222 . LmxM.31.1310 237 VERRLVR|KP 0.116 . LmxM.31.1310 238 ERRLVRK|PP 0.108 . LmxM.31.1310 297 GGWNCPR|CG 0.086 . LmxM.31.1310 301 CPRCGFR|ND 0.111 . LmxM.31.1310 331 GEATWIK|RP 0.056 . LmxM.31.1310 332 EATWIKR|PR 0.205 . LmxM.31.1310 334 TWIKRPR|FD 0.107 . LmxM.31.1310 364 MPVQQPK|QQ 0.067 . ____________________________^_________________

  • Fasta :-

    >LmxM.31.1310 ATGGAACATGTTTTGCATCGTGCCCGTGTGCTGCTCCCGCGTCGCGGCTGGCGCGTCGGC CTTATCAAGGAATTCTACCCGCGCGGAGCGACACTGCTTGGACTCAATGTGAATGCCGGC AGCGAGGTATGCATTCGCTTCCGTGTTCCAGGCAAGAAAAACGAGTTCCTGCCATTTCAT GAAGTGCTGTGTACAGCCTTGCACGAGTTTACGCACTGTGTGCACTCTCGGCACGATCGT TCCTTCTGGAACCTCTACTACGATTTGGTCAAGGAGTGCGAGGCGCTGGAAATCACCATG ATCCAGCAGGGCATGCGGCTCTACCCAGAAATCTACTCCGCACCCAGGAGCTGCTCCGGC ACTGGGTCTCAGCACAGCCACTCTGGTCATGAGGGCAGGACTGCAGCAACGGCCAGTAGC GCTCGAGGCGGAGGCCGTCGTCTCGGTAATGGCGGCACTAGAGGAGGCAGTAGGGGACGA GGAGGTAGGGTGAGCACGGGCAGTCGAAATGTCACACAAACCATCACCAAGACCGCTCGC GCCGCCTCCAGCTGCAGCTCCTCGCCTACGAGCAGTGCGGCTTTTCCTGGGGAAGGGCGC CGCCTCGGCGTTGGCGGTCTCCGCCAGTACGACGCCCCAGTCGACTTCACCCCGACACGC GGCGTGCTGCGCCGCATCCTTGCCGACGCGGTGGAGAGACGTCTTGTGCGGAAGCCGCCG TCACCAGCAACGGTCCCGCTGGGCTCGGAGCCTCTAGCTCTCTCAGTTGACAGCGGCACT TCCCCACAAGAAGATGAGGAACAATGCGAGGTGGACGACGACGGCGTACCGGACTGCGTC CCGCATAGCCTTTCGGGTCACGAGGACGGCGGCGGCTGGAATTGCCCACGTTGTGGTTTT CGCAACGATGACAACGTGATCGGTAGCTGCGCGTTCTGCGCTGATTGCAATGAGGGGGAC GAGGTGAACGAAGGAGAGGCGACATGGATAAAGCGGCCTCGATTCGACAACGAGCACTCA CTTCTAGAAACGCCCACGATAGTCGCCTCCTCGGCCACCGCGTCGAACACGATGCCCGTG CAGCAGCCGAAACAGCAGCAGCTCGAGTGCACCGCAGAAGAGCACTATATTGTCGTGAGC GACGAAGACGACAGCTAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.31.1310128 SQHSHSGHEG0.997unspLmxM.31.1310128 SQHSHSGHEG0.997unspLmxM.31.1310128 SQHSHSGHEG0.997unspLmxM.31.1310157 STRGGSRGRG0.99unspLmxM.31.1310183 SARAASSCSS0.992unspLmxM.31.1310261 SDSGTSPQED0.995unspLmxM.31.1310380 SYIVVSDEDD0.99unspLmxM.31.131076 SHCVHSRHDR0.992unspLmxM.31.1310126 SGSQHSHSGH0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India