LmxM.31.3890 | cysteine peptidase, Clan CA, family C54, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.31.3890OTHER0.9998350.0001060.000059
No Results

  • Fasta :-

    >LmxM.31.3890 MSPNDKMAENAPCFDSGSFFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFV KAAAKKLLYFSYRNCFPPLPNRSTTDTRWGCLVRTTQMLVGSCLLRYHCKGAYVLPERDN AELKERISRLFMDVPSAPLGIHKVEDEAHKNSVKYASMLSPTEAGMAIAAALIAFHAQGG DAPFTFCCENRNIDESAVMAKLSEGQHVILIIPVVLGIAPMSGQYERMLLKILDMKACCG IAGGFKQASLYMFGHQGRNVFFMDPHYVQRAYTSGRTVGTLEGARGDLAARRFDPCMVLG FYLHTPADYCEFAEELAVVNSLVVFPLISFGRWPREGTSPSDDRVVSVAESEESITLYEK KKPQLDPNPLAAGGGHARSSNPISPPPI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/826 Sequence name : 826 Sequence length : 388 VALUES OF COMPUTED PARAMETERS Coef20 : 3.381 CoefTot : -0.275 ChDiff : 4 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.765 1.994 0.305 0.764 MesoH : 0.004 0.683 -0.206 0.330 MuHd_075 : 31.581 10.574 9.005 3.947 MuHd_095 : 9.715 3.935 0.874 1.689 MuHd_100 : 16.297 7.555 2.503 2.949 MuHd_105 : 23.162 11.723 4.356 4.257 Hmax_075 : 8.200 1.800 1.348 2.090 Hmax_095 : -3.413 -2.900 -2.578 0.720 Hmax_100 : 5.300 0.500 -1.568 2.100 Hmax_105 : 9.500 5.900 0.105 2.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9644 0.0356 DFMC : 0.9417 0.0583
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 388 LmxM.31.3890 MSPNDKMAENAPCFDSGSFFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFVKAAAKKLLYFSYRNCFPPLP 80 NRSTTDTRWGCLVRTTQMLVGSCLLRYHCKGAYVLPERDNAELKERISRLFMDVPSAPLGIHKVEDEAHKNSVKYASMLS 160 PTEAGMAIAAALIAFHAQGGDAPFTFCCENRNIDESAVMAKLSEGQHVILIIPVVLGIAPMSGQYERMLLKILDMKACCG 240 IAGGFKQASLYMFGHQGRNVFFMDPHYVQRAYTSGRTVGTLEGARGDLAARRFDPCMVLGFYLHTPADYCEFAEELAVVN 320 SLVVFPLISFGRWPREGTSPSDDRVVSVAESEESITLYEKKKPQLDPNPLAAGGGHARSSNPISPPPI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.31.3890 6 -MSPNDK|MA 0.078 . LmxM.31.3890 21 DSGSFFK|WW 0.060 . LmxM.31.3890 28 WWLNPSK|IF 0.060 . LmxM.31.3890 31 NPSKIFR|TP 0.118 . LmxM.31.3890 35 IFRTPNR|KL 0.093 . LmxM.31.3890 36 FRTPNRK|LK 0.070 . LmxM.31.3890 38 TPNRKLK|NT 0.243 . LmxM.31.3890 61 GTTEFVK|AA 0.069 . LmxM.31.3890 65 FVKAAAK|KL 0.052 . LmxM.31.3890 66 VKAAAKK|LL 0.102 . LmxM.31.3890 73 LLYFSYR|NC 0.105 . LmxM.31.3890 82 FPPLPNR|ST 0.135 . LmxM.31.3890 88 RSTTDTR|WG 0.090 . LmxM.31.3890 94 RWGCLVR|TT 0.083 . LmxM.31.3890 106 VGSCLLR|YH 0.099 . LmxM.31.3890 110 LLRYHCK|GA 0.080 . LmxM.31.3890 118 AYVLPER|DN 0.078 . LmxM.31.3890 124 RDNAELK|ER 0.064 . LmxM.31.3890 126 NAELKER|IS 0.081 . LmxM.31.3890 129 LKERISR|LF 0.245 . LmxM.31.3890 143 APLGIHK|VE 0.061 . LmxM.31.3890 150 VEDEAHK|NS 0.057 . LmxM.31.3890 154 AHKNSVK|YA 0.079 . LmxM.31.3890 191 TFCCENR|NI 0.133 . LmxM.31.3890 201 ESAVMAK|LS 0.082 . LmxM.31.3890 227 MSGQYER|ML 0.145 . LmxM.31.3890 231 YERMLLK|IL 0.064 . LmxM.31.3890 236 LKILDMK|AC 0.068 . LmxM.31.3890 246 GIAGGFK|QA 0.074 . LmxM.31.3890 258 MFGHQGR|NV 0.137 . LmxM.31.3890 270 DPHYVQR|AY 0.138 . LmxM.31.3890 276 RAYTSGR|TV 0.214 . LmxM.31.3890 285 GTLEGAR|GD 0.073 . LmxM.31.3890 291 RGDLAAR|RF 0.080 . LmxM.31.3890 292 GDLAARR|FD 0.120 . LmxM.31.3890 332 PLISFGR|WP 0.090 . LmxM.31.3890 335 SFGRWPR|EG 0.153 . LmxM.31.3890 344 TSPSDDR|VV 0.157 . LmxM.31.3890 360 SITLYEK|KK 0.055 . LmxM.31.3890 361 ITLYEKK|KP 0.074 . LmxM.31.3890 362 TLYEKKK|PQ 0.101 . LmxM.31.3890 378 AGGGHAR|SS 0.148 . ____________________________^_________________

  • Fasta :-

    >LmxM.31.3890 ATGAGCCCAAACGACAAAATGGCAGAGAACGCGCCTTGCTTCGACTCAGGCAGCTTTTTC AAGTGGTGGCTCAACCCCAGCAAGATCTTCCGCACCCCGAACCGCAAGCTGAAAAACACA ACGCCTGTCGTCGTGGTGGGCTCAGGCTCACATAGCGGCGATGGGACGACGGAGTTTGTG AAGGCGGCAGCGAAGAAGCTCCTCTACTTCTCCTACCGCAACTGCTTCCCCCCCTTGCCG AACAGGTCTACAACGGACACCCGCTGGGGCTGCCTTGTGCGCACCACGCAAATGCTTGTC GGCAGCTGCCTCCTGCGATACCACTGCAAAGGCGCCTACGTGCTACCAGAGAGGGACAAC GCTGAGCTAAAGGAGAGGATATCGCGGCTGTTCATGGACGTCCCGTCCGCCCCACTTGGG ATCCACAAGGTCGAGGATGAGGCTCACAAGAACAGTGTCAAGTACGCCAGCATGCTGTCC CCCACTGAGGCGGGCATGGCGATTGCAGCCGCTCTGATTGCCTTTCACGCACAAGGTGGG GATGCGCCATTCACGTTTTGCTGCGAGAACCGCAATATTGATGAATCGGCGGTGATGGCG AAGCTCTCGGAGGGCCAGCATGTTATTCTTATTATCCCTGTAGTCTTGGGCATTGCACCC ATGTCGGGCCAGTATGAGCGCATGCTGCTCAAGATTCTCGACATGAAGGCGTGCTGCGGT ATCGCAGGAGGCTTCAAGCAAGCATCTTTGTACATGTTTGGTCATCAGGGCCGCAACGTC TTTTTCATGGACCCGCACTACGTCCAAAGGGCCTACACCTCTGGCAGGACCGTCGGCACC CTCGAGGGCGCTCGCGGCGACCTGGCGGCGCGCAGATTTGACCCGTGCATGGTTCTTGGT TTTTATCTTCACACCCCGGCGGATTACTGCGAGTTTGCGGAAGAACTAGCAGTGGTCAAT TCACTCGTGGTGTTTCCACTAATCAGCTTTGGTCGGTGGCCTCGGGAGGGGACGTCCCCT TCCGACGATCGCGTCGTTTCTGTGGCGGAGAGCGAGGAGAGCATTACGCTATACGAGAAA AAGAAGCCACAGCTAGACCCGAATCCGCTCGCTGCTGGCGGAGGGCACGCCAGAAGCTCG AACCCGATCTCTCCTCCGCCGATCTAG
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  • Fasta :-

    MSPNDKMAENAPCFDSGSFFKWWLNPSKIFRTPNRKLKNTTPVVVVGSGSHSGDGTTEFV KAAAKKLLYFSYRNCFPPLPNRSTTDTRWGCLVRTTQMLVGSCLLRYHCKGAYVLPERDN AELKERISRLFMDVPSAPLGIHKVEDEAHKNSVKYASMLSPTEAGMAIAAALIAFHAQGG DAPFTFCCENRNIDESAVMAKLSEGQHVILIIPVVLGIAPMSGQYERMLLKILDMKACCG IAGGFKQASLYMFGHQGRNVFFMDPHYVQRAYTSGRTVGTLEGARGDLAARRFDPCMVLG FYLHTPADYCEFAEELAVVNSLVVFPLISFGRWPREGTSPSDDRVVSVAESEESITLYEK KKPQLDPNPLAAGGGHARSSNPISPPPI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.31.3890347 SDRVVSVAES0.997unspLmxM.31.3890347 SDRVVSVAES0.997unspLmxM.31.3890347 SDRVVSVAES0.997unspLmxM.31.389083 SLPNRSTTDT0.996unspLmxM.31.3890339 SREGTSPSDD0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India