LmxM.32.2860 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
LmxM.32.2860OTHER0.9999930.0000070.000000
No Results

  • Fasta :-

    >LmxM.32.2860 MSSPPQDPPGGGNSDGSGACSRPSKPRPGPLTFPRDRTYGTLGNGNGNGGEGGSSAGVGN TRESDLLITGSTNGRLSSDPMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVF GLSAPMRAERCTTPFGTLLGESRGVAAYSNCRNDYGGDHMEHFVSVGLQRLYTGSQWQAL EYTRRYWILTSLLTFPSLPRADHIILTDTASTVNGRRGGRGSSVVPLERYTNLFLPPQVL QNSSEDMPVMKLNGEANNLSASVRQRNWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVR GPFDSVAAAGKEAHWFIVKNASAQGRHPMAPGSTLPRLLLSQESEVVSGAVTPPKNATGN DTARRPASGGCDNVSSDEEGEEVVRGCSVLYYKVFVVEQNWDNSYWETLRYLTRSDSHND TKRNTLRDGNATRKESSAKQQRRAATRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWV RASSDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/687 Sequence name : 687 Sequence length : 486 VALUES OF COMPUTED PARAMETERS Coef20 : 2.200 CoefTot : -0.437 ChDiff : 7 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.435 2.853 0.465 0.905 MesoH : 0.181 0.613 -0.177 0.305 MuHd_075 : 4.494 2.451 0.810 0.704 MuHd_095 : 13.175 3.717 1.673 2.302 MuHd_100 : 8.018 3.728 1.262 2.458 MuHd_105 : 4.575 3.900 1.430 2.349 Hmax_075 : 2.333 -6.913 -1.344 1.330 Hmax_095 : 4.600 -5.300 -1.348 2.080 Hmax_100 : 5.400 -4.500 -1.016 1.780 Hmax_105 : -2.217 -5.600 -2.512 0.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9995 0.0005 DFMC : 0.9990 0.0010
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 486 LmxM.32.2860 MSSPPQDPPGGGNSDGSGACSRPSKPRPGPLTFPRDRTYGTLGNGNGNGGEGGSSAGVGNTRESDLLITGSTNGRLSSDP 80 MPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVFGLSAPMRAERCTTPFGTLLGESRGVAAYSNCRNDYGGDHM 160 EHFVSVGLQRLYTGSQWQALEYTRRYWILTSLLTFPSLPRADHIILTDTASTVNGRRGGRGSSVVPLERYTNLFLPPQVL 240 QNSSEDMPVMKLNGEANNLSASVRQRNWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVRGPFDSVAAAGKEAHWFIVKN 320 ASAQGRHPMAPGSTLPRLLLSQESEVVSGAVTPPKNATGNDTARRPASGGCDNVSSDEEGEEVVRGCSVLYYKVFVVEQN 400 WDNSYWETLRYLTRSDSHNDTKRNTLRDGNATRKESSAKQQRRAATRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWV 480 RASSDA 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ...... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.32.2860 22 GSGACSR|PS 0.084 . LmxM.32.2860 25 ACSRPSK|PR 0.136 . LmxM.32.2860 27 SRPSKPR|PG 0.090 . LmxM.32.2860 35 GPLTFPR|DR 0.122 . LmxM.32.2860 37 LTFPRDR|TY 0.102 . LmxM.32.2860 62 AGVGNTR|ES 0.079 . LmxM.32.2860 75 TGSTNGR|LS 0.101 . LmxM.32.2860 95 SPIIQIR|DH 0.165 . LmxM.32.2860 127 GLSAPMR|AE 0.110 . LmxM.32.2860 130 APMRAER|CT 0.332 . LmxM.32.2860 143 TLLGESR|GV 0.111 . LmxM.32.2860 152 AAYSNCR|ND 0.088 . LmxM.32.2860 170 VSVGLQR|LY 0.103 . LmxM.32.2860 184 QALEYTR|RY 0.067 . LmxM.32.2860 185 ALEYTRR|YW 0.104 . LmxM.32.2860 200 TFPSLPR|AD 0.096 . LmxM.32.2860 216 ASTVNGR|RG 0.084 . LmxM.32.2860 217 STVNGRR|GG 0.110 . LmxM.32.2860 220 NGRRGGR|GS 0.279 . LmxM.32.2860 229 SVVPLER|YT 0.085 . LmxM.32.2860 251 EDMPVMK|LN 0.078 . LmxM.32.2860 264 NLSASVR|QR 0.102 . LmxM.32.2860 266 SASVRQR|NW 0.205 . LmxM.32.2860 269 VRQRNWR|QA 0.441 . LmxM.32.2860 283 DIVVYAK|NS 0.066 . LmxM.32.2860 286 VYAKNSR|TL 0.082 . LmxM.32.2860 300 AVVTAVR|GP 0.087 . LmxM.32.2860 311 SVAAAGK|EA 0.070 . LmxM.32.2860 319 AHWFIVK|NA 0.079 . LmxM.32.2860 326 NASAQGR|HP 0.136 . LmxM.32.2860 337 PGSTLPR|LL 0.098 . LmxM.32.2860 355 GAVTPPK|NA 0.073 . LmxM.32.2860 364 TGNDTAR|RP 0.098 . LmxM.32.2860 365 GNDTARR|PA 0.233 . LmxM.32.2860 385 EGEEVVR|GC 0.075 . LmxM.32.2860 393 CSVLYYK|VF 0.058 . LmxM.32.2860 410 SYWETLR|YL 0.086 . LmxM.32.2860 414 TLRYLTR|SD 0.149 . LmxM.32.2860 422 DSHNDTK|RN 0.060 . LmxM.32.2860 423 SHNDTKR|NT 0.191 . LmxM.32.2860 427 TKRNTLR|DG 0.131 . LmxM.32.2860 433 RDGNATR|KE 0.092 . LmxM.32.2860 434 DGNATRK|ES 0.096 . LmxM.32.2860 439 RKESSAK|QQ 0.073 . LmxM.32.2860 442 SSAKQQR|RA 0.123 . LmxM.32.2860 443 SAKQQRR|AA 0.236 . LmxM.32.2860 447 QRRAATR|LR 0.083 . LmxM.32.2860 449 RAATRLR|NF 0.097 . LmxM.32.2860 453 RLRNFTR|VL 0.099 . LmxM.32.2860 481 LILGWVR|AS 0.096 . ____________________________^_________________

  • Fasta :-

    >LmxM.32.2860 ATGAGCTCGCCACCGCAGGATCCGCCGGGTGGCGGTAACAGTGACGGTAGTGGCGCCTGT AGCCGCCCTTCTAAGCCACGGCCAGGCCCGCTCACTTTCCCGCGAGACCGCACCTACGGC ACCCTCGGCAACGGCAACGGCAACGGCGGCGAGGGCGGCAGCAGCGCCGGCGTAGGAAAC ACTCGTGAAAGTGACCTTCTTATCACCGGCAGCACAAACGGGAGACTCAGCAGCGACCCG ATGCCGCTGTGGAGCTACGCTGCCTCGCCCATCATTCAAATCCGCGATCACTGCCATCAG CAGTGGTTGGCGGTACTGCTAACTGTTGTTCTGCTCCTCGTCACATTCTACTTTGTCTTC GGTCTTTCTGCTCCAATGCGAGCAGAGCGGTGCACCACGCCGTTTGGCACTCTACTGGGC GAGAGCAGAGGCGTGGCGGCGTACAGCAACTGCCGCAACGACTACGGCGGGGATCACATG GAGCACTTCGTGTCTGTAGGGCTGCAGCGGCTCTACACCGGTTCCCAATGGCAGGCCCTC GAGTACACTCGGCGCTACTGGATCCTGACATCGCTGCTGACCTTCCCATCCCTTCCCAGG GCGGATCATATCATTCTCACTGACACCGCCAGCACCGTGAACGGGCGTCGTGGAGGTCGT GGCAGCTCCGTCGTGCCACTGGAGCGGTACACAAATCTTTTCCTGCCACCTCAGGTTCTG CAGAACAGCAGCGAAGATATGCCCGTGATGAAACTGAATGGCGAGGCCAACAACCTCTCA GCTAGCGTGCGGCAAAGGAACTGGCGTCAGGCACTCGTGCAACCCCACGACATTGTCGTG TACGCCAAGAACTCGCGGACGCTGCCGTCTGGTCATGTCGCGGTCGTGACGGCGGTGCGC GGCCCCTTTGACAGCGTCGCCGCAGCCGGCAAGGAAGCGCACTGGTTTATTGTGAAGAAC GCCTCGGCACAGGGTCGGCACCCCATGGCTCCTGGGTCGACGTTGCCACGGTTGCTTCTT TCACAGGAGAGCGAGGTTGTGAGTGGCGCCGTGACGCCGCCGAAGAACGCCACTGGCAAC GACACGGCAAGACGCCCTGCCAGCGGCGGCTGTGATAACGTATCTTCAGACGAGGAAGGC GAGGAGGTGGTACGCGGGTGTAGCGTTCTCTATTACAAGGTGTTTGTTGTAGAACAAAAC TGGGACAACTCCTATTGGGAAACGCTGCGCTACTTGACAAGGTCTGACTCGCACAACGAC ACCAAGAGAAACACCCTACGCGACGGCAACGCCACCAGGAAGGAGTCGTCTGCGAAGCAA CAGCGAAGGGCCGCAACGCGGCTGCGCAACTTTACTCGAGTACTCCTCCTCCATGAGTAC TCGAACCCGCATGGGTTCTTCCTCGAAGACACACACAACAATCTTATTCTAGGTTGGGTG CGCGCCTCTTCTGATGCGTGA
  • Download Fasta

  • Fasta :-

    MSSPPQDPPGGGNSDGSGACSRPSKPRPGPLTFPRDRTYGTLGNGNGNGGEGGSSAGVGN TRESDLLITGSTNGRLSSDPMPLWSYAASPIIQIRDHCHQQWLAVLLTVVLLLVTFYFVF GLSAPMRAERCTTPFGTLLGESRGVAAYSNCRNDYGGDHMEHFVSVGLQRLYTGSQWQAL EYTRRYWILTSLLTFPSLPRADHIILTDTASTVNGRRGGRGSSVVPLERYTNLFLPPQVL QNSSEDMPVMKLNGEANNLSASVRQRNWRQALVQPHDIVVYAKNSRTLPSGHVAVVTAVR GPFDSVAAAGKEAHWFIVKNASAQGRHPMAPGSTLPRLLLSQESEVVSGAVTPPKNATGN DTARRPASGGCDNVSSDEEGEEVVRGCSVLYYKVFVVEQNWDNSYWETLRYLTRSDSHND TKRNTLRDGNATRKESSAKQQRRAATRLRNFTRVLLLHEYSNPHGFFLEDTHNNLILGWV RASSDA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.32.2860243 SVLQNSSEDM0.993unspLmxM.32.2860243 SVLQNSSEDM0.993unspLmxM.32.2860243 SVLQNSSEDM0.993unspLmxM.32.2860376 SDNVSSDEEG0.992unspLmxM.32.2860417 STRSDSHNDT0.998unspLmxM.32.2860437 SRKESSAKQQ0.997unspLmxM.32.286077 SNGRLSSDPM0.994unspLmxM.32.2860133 TERCTTPFGT0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India