LmxM.33.1060 | mitochondrial ATP-dependent zinc metallopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.33.1060OTHER0.9073330.0280200.064647
No Results

  • Fasta :-

    >LmxM.33.1060 MLPQRTPTDAVQRAYTMSPQERILIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQ ARLDADVSNYKAVVVDVPGHTAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSTY YPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRFMFKREMSVSTRLKDVAGLTE AKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAAL DGFKDASGIMVLAATNRVDILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDP SSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKEYVGATHFHLAVERVLVGLEK SAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFE LDRDDTLQKPFGPEKENAVDIAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNA HEMWFALGDRPAMTKEFRTYLES
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/880 Sequence name : 880 Sequence length : 623 VALUES OF COMPUTED PARAMETERS Coef20 : 3.840 CoefTot : -0.404 ChDiff : 0 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.118 2.424 0.403 0.825 MesoH : -0.247 0.600 -0.278 0.311 MuHd_075 : 30.588 16.395 6.682 6.036 MuHd_095 : 29.402 13.970 7.520 6.528 MuHd_100 : 26.964 11.030 6.224 5.523 MuHd_105 : 24.211 10.392 4.901 4.586 Hmax_075 : 9.013 4.638 -0.713 2.319 Hmax_095 : 9.450 6.038 0.677 3.019 Hmax_100 : 9.400 5.700 0.370 3.040 Hmax_105 : 7.300 3.900 -0.993 2.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7785 0.2215 DFMC : 0.8274 0.1726
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 623 LmxM.33.1060 MLPQRTPTDAVQRAYTMSPQERILIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQARLDADVSNYKAVVVDVPGH 80 TAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSTYYPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRF 160 MFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS 240 EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAALDGFKDASGIMVLAATNRVDI 320 LDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDPSSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKE 400 YVGATHFHLAVERVLVGLEKSAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST 480 QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFELDRDDTLQKPFGPEKENAVD 560 IAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNAHEMWFALGDRPAMTKEFRTYLES 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .........................................P...................................... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.33.1060 5 --MLPQR|TP 0.081 . LmxM.33.1060 13 PTDAVQR|AY 0.086 . LmxM.33.1060 22 TMSPQER|IL 0.166 . LmxM.33.1060 31 IAQIAAR|AR 0.082 . LmxM.33.1060 33 QIAARAR|LQ 0.095 . LmxM.33.1060 36 ARARLQR|TW 0.355 . LmxM.33.1060 39 RLQRTWR|HL 0.336 . LmxM.33.1060 55 SALIGYR|WY 0.083 . LmxM.33.1060 62 WYTAQAR|LD 0.076 . LmxM.33.1060 71 ADVSNYK|AV 0.069 . LmxM.33.1060 90 YVDDNGK|FI 0.066 . LmxM.33.1060 95 GKFIGVR|NF 0.081 . LmxM.33.1060 105 DFATFEK|TC 0.063 . LmxM.33.1060 111 KTCDPEK|DV 0.088 . LmxM.33.1060 147 GFNGSAR|MI 0.136 . LmxM.33.1060 157 MAAQAEK|SR 0.077 . LmxM.33.1060 159 AQAEKSR|FM 0.129 . LmxM.33.1060 163 KSRFMFK|RE 0.064 . LmxM.33.1060 164 SRFMFKR|EM 0.366 . LmxM.33.1060 171 EMSVSTR|LK 0.123 . LmxM.33.1060 173 SVSTRLK|DV 0.104 . LmxM.33.1060 182 AGLTEAK|HE 0.058 . LmxM.33.1060 193 EVIDFLK|HP 0.065 . LmxM.33.1060 197 FLKHPGR|YQ 0.095 . LmxM.33.1060 204 YQTLGAK|LP 0.057 . LmxM.33.1060 207 LGAKLPK|GV 0.079 . LmxM.33.1060 219 GPPGVGK|TL 0.064 . LmxM.33.1060 224 GKTLLAK|AV 0.078 . LmxM.33.1060 253 VGVGAQR|VR 0.070 . LmxM.33.1060 255 VGAQRVR|EL 0.093 . LmxM.33.1060 259 RVRELFR|EA 0.115 . LmxM.33.1060 265 REAHNCK|PC 0.065 . LmxM.33.1060 279 EIDAFGR|KR 0.077 . LmxM.33.1060 280 IDAFGRK|RR 0.084 . LmxM.33.1060 281 DAFGRKR|RS 0.171 . LmxM.33.1060 282 AFGRKRR|SD 0.765 *ProP* LmxM.33.1060 290 DGNGSSR|GT 0.098 . LmxM.33.1060 304 AALDGFK|DA 0.076 . LmxM.33.1060 317 VLAATNR|VD 0.069 . LmxM.33.1060 327 LDNALTR|SG 0.105 . LmxM.33.1060 330 ALTRSGR|FD 0.246 . LmxM.33.1060 333 RSGRFDR|KI 0.358 . LmxM.33.1060 334 SGRFDRK|IS 0.077 . LmxM.33.1060 339 RKISLEK|PS 0.062 . LmxM.33.1060 343 LEKPSYK|DR 0.072 . LmxM.33.1060 345 KPSYKDR|VA 0.165 . LmxM.33.1060 396 AAIQAAR|ED 0.085 . LmxM.33.1060 399 QAAREDK|EY 0.146 . LmxM.33.1060 413 FHLAVER|VL 0.080 . LmxM.33.1060 420 VLVGLEK|SA 0.088 . LmxM.33.1060 424 LEKSAVK|YT 0.064 . LmxM.33.1060 430 KYTPHEK|ER 0.054 . LmxM.33.1060 432 TPHEKER|LA 0.147 . LmxM.33.1060 455 DTDPVIK|ST 0.068 . LmxM.33.1060 461 KSTILPR|GR 0.099 . LmxM.33.1060 463 TILPRGR|HR 0.081 . LmxM.33.1060 465 LPRGRHR|TG 0.086 . LmxM.33.1060 471 RTGVTQK|LP 0.062 . LmxM.33.1060 483 YISTQER|LL 0.096 . LmxM.33.1060 487 QERLLQR|IV 0.137 . LmxM.33.1060 491 LQRIVGR|LG 0.104 . LmxM.33.1060 521 MATSMAR|DM 0.096 . LmxM.33.1060 543 MGFELDR|DD 0.083 . LmxM.33.1060 549 RDDTLQK|PF 0.068 . LmxM.33.1060 555 KPFGPEK|EN 0.062 . LmxM.33.1060 572 IVQSCLK|RA 0.065 . LmxM.33.1060 573 VQSCLKR|AR 0.170 . LmxM.33.1060 575 SCLKRAR|AL 0.092 . LmxM.33.1060 586 EHLNHTR|II 0.083 . LmxM.33.1060 594 IAGLLLK|QE 0.055 . LmxM.33.1060 610 WFALGDR|PA 0.106 . LmxM.33.1060 615 DRPAMTK|EF 0.068 . LmxM.33.1060 618 AMTKEFR|TY 0.081 . ____________________________^_________________

  • Fasta :-

    >LmxM.33.1060 ATGCTGCCGCAGCGCACCCCGACTGATGCGGTGCAGCGCGCGTATACAATGTCGCCGCAG GAGCGCATTCTGATTGCGCAGATTGCGGCACGGGCACGGCTGCAGCGGACGTGGCGCCAC CTTGGTATCCTCTCGGTGCTGCTCTCCGCACTTATTGGATACCGGTGGTACACGGCGCAG GCGCGGCTTGACGCTGACGTGTCGAACTACAAGGCGGTTGTCGTGGACGTGCCCGGCCAC ACCGCTGTCTACGTGGACGACAACGGCAAGTTCATTGGCGTGCGTAACTTCATCGACTTT GCCACCTTCGAGAAGACCTGCGACCCGGAAAAGGATGTGTTGATACAGTTTAGCACTTAC TACCCATGGATCCCGATGCTGCTGCTATGTCTACTGCCGGTGCTGGCTGTTGTGAACGCG GGCTTCAACGGGTCAGCACGCATGATCACGATGGCGGCGCAGGCGGAGAAGAGTCGTTTT ATGTTCAAGCGAGAGATGTCGGTAAGTACGCGGCTGAAGGACGTCGCGGGGCTGACGGAG GCAAAACACGAGGTGGTGGAGGTGATTGACTTTCTCAAGCACCCGGGACGTTACCAGACG CTTGGTGCGAAGCTGCCGAAGGGCGTGCTGCTCGACGGCCCGCCTGGTGTCGGCAAGACG CTGCTGGCCAAGGCGGTGGCTGGCGAGGCCATGGTGCCGTTTGTCAGCTGCTCGGGCAGC GAGTTTGAGGAGGTGTACGTGGGCGTCGGCGCACAGCGCGTGCGTGAGCTCTTTCGCGAG GCGCATAACTGCAAGCCATGTGTCGTTTTCATTGATGAGATCGACGCTTTCGGCCGCAAG CGCCGATCAGACGGCAACGGCAGCTCGCGGGGCACCTTGAACGCCTTCCTCGCGGCGCTC GACGGGTTCAAGGATGCGTCTGGTATCATGGTGCTGGCGGCCACGAACCGTGTCGACATC CTAGACAATGCGCTGACGCGCTCCGGCCGCTTCGATCGCAAGATCTCGCTTGAGAAGCCG TCCTACAAGGATCGTGTGGCGATCGCCCTGGTGCATCTGCAGCCGCTCCACCTTGACCCG TCATCCTCGCTGCAGAACTACGCCGAGATGGTAGCGGCGCTGACGCCTGGCTGCAGCGGG GCAGACATCTTCAACGTGTGCAACGAGGCGGCTATCCAGGCGGCGCGGGAGGACAAGGAG TATGTCGGGGCGACGCACTTTCATCTGGCTGTCGAGCGGGTGCTCGTGGGTCTTGAAAAG AGCGCTGTCAAGTACACGCCCCACGAGAAAGAGCGACTGGCGTACCACGAGGCGGGGATT GTGGTGCTGAACTGGTTCCAGAGCGACACGGATCCGGTCATCAAGTCCACCATCCTGCCG CGCGGCCGCCACCGCACGGGCGTGACACAGAAGCTGCCGCAGAACATCTACATCTCGACG CAGGAGCGACTGCTGCAACGCATTGTGGGCCGGCTGGGCGGCTACGTGTCAGAGGAGCAC TTCTTCAGCGATGTGTCGACGAGTGCGGCCGAAGATTTGCAGATGGCGACGAGCATGGCA CGTGACATGGTGTGCGTGTACGGCATGGACCCGGTGCACATTGGGCACATGGGGTTCGAG CTGGACCGCGACGACACGCTGCAGAAACCGTTTGGCCCCGAGAAAGAGAACGCGGTTGAC ATTGCCGTGGAGACGATTGTGCAGTCGTGCCTAAAGCGGGCGCGAGCTCTGATGCTGGAG CACCTGAATCACACCCGCATCATTGCTGGGCTGCTGCTGAAGCAGGAGACGCTGAATGCA CATGAAATGTGGTTCGCACTGGGCGACCGCCCTGCCATGACGAAGGAGTTCCGGACCTAC CTGGAAAGCTAA
  • Download Fasta

  • Fasta :-

    MLPQRTPTDAVQRAYTMSPQERILIAQIAARARLQRTWRHLGILSVLLSALIGYRWYTAQ ARLDADVSNYKAVVVDVPGHTAVYVDDNGKFIGVRNFIDFATFEKTCDPEKDVLIQFSTY YPWIPMLLLCLLPVLAVVNAGFNGSARMITMAAQAEKSRFMFKREMSVSTRLKDVAGLTE AKHEVVEVIDFLKHPGRYQTLGAKLPKGVLLDGPPGVGKTLLAKAVAGEAMVPFVSCSGS EFEEVYVGVGAQRVRELFREAHNCKPCVVFIDEIDAFGRKRRSDGNGSSRGTLNAFLAAL DGFKDASGIMVLAATNRVDILDNALTRSGRFDRKISLEKPSYKDRVAIALVHLQPLHLDP SSSLQNYAEMVAALTPGCSGADIFNVCNEAAIQAAREDKEYVGATHFHLAVERVLVGLEK SAVKYTPHEKERLAYHEAGIVVLNWFQSDTDPVIKSTILPRGRHRTGVTQKLPQNIYIST QERLLQRIVGRLGGYVSEEHFFSDVSTSAAEDLQMATSMARDMVCVYGMDPVHIGHMGFE LDRDDTLQKPFGPEKENAVDIAVETIVQSCLKRARALMLEHLNHTRIIAGLLLKQETLNA HEMWFALGDRPAMTKEFRTYLES

  • title: ATP binding site
  • coordinates: P214,P215,G216,V217,G218,K219,T220,L221,D272,N316
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.33.1060341 SLEKPSYKDR0.997unspLmxM.33.1060341 SLEKPSYKDR0.997unspLmxM.33.1060341 SLEKPSYKDR0.997unspLmxM.33.1060283 SRKRRSDGNG0.997unspLmxM.33.1060336 SDRKISLEKP0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India