LmxM.33.4000 | Peptidase family C78, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.33.4000OTHER0.9996530.0000660.000281
No Results

  • Fasta :-

    >LmxM.33.4000 MEDVMARIADTASYPLHVFQRNKKTVGIVGADALAALPMAGGSCTHCLVTSATELQPFLV DSPAAEVLFKWCARVSCSLSRTLTRHCLVVKNVSRGIAVSALLERDRGDVSAVETVWADV ERNAELWKTPSRGGNTDALHVYMMSVPEVPDTISNTLHDIPNASAAAPLGSLVTTRVLLG DSASEIVAAIRQLFNHFLGSEAEHLTGTEVCWPASLLFPVNVHTRDDARRRAEHAALLLP HQGLLHHEDAIQAWSTWDDLRSQHEAKVASVFRTGAAWERHLATSPHRDLAPASAPSLPG AETLVVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHASLLRAAIPSIRRIQEILY EVDPDKASKGAFVGSRDWIGSFEIMLVLQKYLPGLECTIKRLERGQDLVTDSSVQLLLIE HFRSPRAAPVMIGGSSYAHTILGVHANIHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW KEASKFFEAGSWYNLCIPRVDLFDPR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/367 Sequence name : 367 Sequence length : 506 VALUES OF COMPUTED PARAMETERS Coef20 : 3.830 CoefTot : 0.000 ChDiff : -7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.494 1.465 0.287 0.628 MesoH : 0.019 0.729 -0.115 0.280 MuHd_075 : 21.679 10.703 6.058 4.090 MuHd_095 : 39.914 23.267 9.554 6.689 MuHd_100 : 40.773 24.210 10.110 7.168 MuHd_105 : 36.328 21.228 8.790 6.876 Hmax_075 : 11.783 14.700 2.538 5.017 Hmax_095 : 18.500 19.900 3.121 6.120 Hmax_100 : 16.700 16.500 2.403 5.620 Hmax_105 : 4.700 8.867 -0.629 3.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7094 0.2906 DFMC : 0.7838 0.2162
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 506 LmxM.33.4000 MEDVMARIADTASYPLHVFQRNKKTVGIVGADALAALPMAGGSCTHCLVTSATELQPFLVDSPAAEVLFKWCARVSCSLS 80 RTLTRHCLVVKNVSRGIAVSALLERDRGDVSAVETVWADVERNAELWKTPSRGGNTDALHVYMMSVPEVPDTISNTLHDI 160 PNASAAAPLGSLVTTRVLLGDSASEIVAAIRQLFNHFLGSEAEHLTGTEVCWPASLLFPVNVHTRDDARRRAEHAALLLP 240 HQGLLHHEDAIQAWSTWDDLRSQHEAKVASVFRTGAAWERHLATSPHRDLAPASAPSLPGAETLVVSGAYDYYHYRVDGF 320 RDDGWGCAYRSLQTVLSWFQHASLLRAAIPSIRRIQEILYEVDPDKASKGAFVGSRDWIGSFEIMLVLQKYLPGLECTIK 400 RLERGQDLVTDSSVQLLLIEHFRSPRAAPVMIGGSSYAHTILGVHANIHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW 480 KEASKFFEAGSWYNLCIPRVDLFDPR 560 .......................P........................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.33.4000 7 MEDVMAR|IA 0.116 . LmxM.33.4000 21 PLHVFQR|NK 0.119 . LmxM.33.4000 23 HVFQRNK|KT 0.066 . LmxM.33.4000 24 VFQRNKK|TV 0.539 *ProP* LmxM.33.4000 70 AAEVLFK|WC 0.064 . LmxM.33.4000 74 LFKWCAR|VS 0.084 . LmxM.33.4000 81 VSCSLSR|TL 0.079 . LmxM.33.4000 85 LSRTLTR|HC 0.093 . LmxM.33.4000 91 RHCLVVK|NV 0.091 . LmxM.33.4000 95 VVKNVSR|GI 0.091 . LmxM.33.4000 105 VSALLER|DR 0.113 . LmxM.33.4000 107 ALLERDR|GD 0.083 . LmxM.33.4000 122 VWADVER|NA 0.105 . LmxM.33.4000 128 RNAELWK|TP 0.074 . LmxM.33.4000 132 LWKTPSR|GG 0.084 . LmxM.33.4000 176 GSLVTTR|VL 0.079 . LmxM.33.4000 191 EIVAAIR|QL 0.087 . LmxM.33.4000 225 PVNVHTR|DD 0.106 . LmxM.33.4000 229 HTRDDAR|RR 0.073 . LmxM.33.4000 230 TRDDARR|RA 0.199 . LmxM.33.4000 231 RDDARRR|AE 0.157 . LmxM.33.4000 261 STWDDLR|SQ 0.121 . LmxM.33.4000 267 RSQHEAK|VA 0.090 . LmxM.33.4000 273 KVASVFR|TG 0.104 . LmxM.33.4000 280 TGAAWER|HL 0.103 . LmxM.33.4000 288 LATSPHR|DL 0.093 . LmxM.33.4000 316 YDYYHYR|VD 0.088 . LmxM.33.4000 321 YRVDGFR|DD 0.130 . LmxM.33.4000 330 GWGCAYR|SL 0.195 . LmxM.33.4000 346 QHASLLR|AA 0.115 . LmxM.33.4000 353 AAIPSIR|RI 0.090 . LmxM.33.4000 354 AIPSIRR|IQ 0.088 . LmxM.33.4000 366 YEVDPDK|AS 0.067 . LmxM.33.4000 369 DPDKASK|GA 0.078 . LmxM.33.4000 376 GAFVGSR|DW 0.135 . LmxM.33.4000 390 IMLVLQK|YL 0.062 . LmxM.33.4000 400 GLECTIK|RL 0.073 . LmxM.33.4000 401 LECTIKR|LE 0.131 . LmxM.33.4000 404 TIKRLER|GQ 0.291 . LmxM.33.4000 423 LLIEHFR|SP 0.143 . LmxM.33.4000 426 EHFRSPR|AA 0.285 . LmxM.33.4000 470 AYPTQIK|TA 0.065 . LmxM.33.4000 474 QIKTAIK|KG 0.060 . LmxM.33.4000 475 IKTAIKK|GY 0.095 . LmxM.33.4000 481 KGYVGWK|EA 0.085 . LmxM.33.4000 485 GWKEASK|FF 0.074 . LmxM.33.4000 499 YNLCIPR|VD 0.064 . LmxM.33.4000 506 VDLFDPR|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >LmxM.33.4000 ATGGAGGATGTCATGGCCCGCATCGCCGACACGGCCTCCTATCCGCTGCATGTCTTTCAA CGTAACAAGAAGACCGTCGGCATTGTCGGCGCTGATGCGCTGGCTGCATTGCCCATGGCA GGTGGCAGCTGCACACATTGTCTAGTCACCTCAGCTACCGAGTTGCAGCCGTTCCTTGTA GATTCGCCGGCAGCGGAGGTGCTTTTCAAGTGGTGCGCGCGCGTCAGCTGCTCTCTCTCC CGAACGCTGACGCGTCACTGTCTTGTCGTGAAGAATGTGTCTCGCGGCATCGCCGTCTCT GCACTTCTGGAGAGGGACCGCGGCGACGTTAGCGCCGTAGAGACGGTGTGGGCAGATGTT GAGCGCAACGCGGAGCTGTGGAAGACTCCGTCCAGAGGCGGCAACACCGACGCCCTGCAC GTGTACATGATGAGCGTGCCGGAGGTGCCAGACACCATCTCCAACACGCTACATGATATC CCCAACGCCTCTGCCGCGGCGCCGCTGGGCAGTCTCGTCACCACTCGCGTTCTTCTCGGC GACTCCGCGAGCGAAATAGTGGCGGCGATTCGGCAGCTTTTCAACCACTTTCTCGGTAGT GAGGCGGAGCACCTCACTGGCACGGAGGTGTGCTGGCCTGCTTCCCTGCTCTTCCCTGTG AATGTCCACACCCGCGATGATGCGAGGCGGCGGGCAGAGCACGCGGCCCTGCTGCTGCCG CACCAGGGCCTTCTGCACCATGAGGACGCCATTCAAGCGTGGTCCACGTGGGACGACCTG CGCAGTCAGCACGAGGCAAAGGTCGCTTCCGTCTTTCGTACTGGCGCGGCCTGGGAGCGG CATCTCGCCACGAGCCCGCACCGGGACCTCGCGCCTGCATCCGCACCGTCCCTTCCAGGG GCTGAGACGCTTGTGGTAAGCGGCGCCTATGATTACTACCACTACCGCGTCGACGGCTTC CGCGACGACGGCTGGGGCTGTGCCTACCGTAGCCTGCAAACGGTCCTTTCGTGGTTTCAG CACGCCAGTCTCCTACGTGCCGCTATCCCGTCGATCCGGCGCATTCAGGAGATTCTCTAC GAGGTGGACCCGGACAAGGCGAGCAAGGGAGCCTTCGTGGGATCGCGTGACTGGATCGGC AGCTTCGAGATTATGCTGGTGCTGCAGAAGTATTTGCCCGGTCTGGAGTGCACCATCAAG CGTCTGGAGAGAGGACAAGACCTAGTCACGGACTCCTCGGTGCAGTTGCTGCTGATCGAG CACTTCCGCAGCCCACGAGCCGCACCAGTGATGATAGGGGGCAGCAGCTACGCGCACACG ATCCTCGGCGTCCACGCGAACATCCACACAATGGAGGCGCAGTACCTGATCCTAGACCCG CACTACTCCGCCTACCCGACACAGATCAAGACGGCGATCAAGAAGGGCTACGTGGGATGG AAAGAGGCCTCAAAGTTTTTTGAGGCGGGTAGCTGGTACAACTTGTGCATCCCACGTGTT GACCTGTTCGATCCTCGATGA
  • Download Fasta

  • Fasta :-

    MEDVMARIADTASYPLHVFQRNKKTVGIVGADALAALPMAGGSCTHCLVTSATELQPFLV DSPAAEVLFKWCARVSCSLSRTLTRHCLVVKNVSRGIAVSALLERDRGDVSAVETVWADV ERNAELWKTPSRGGNTDALHVYMMSVPEVPDTISNTLHDIPNASAAAPLGSLVTTRVLLG DSASEIVAAIRQLFNHFLGSEAEHLTGTEVCWPASLLFPVNVHTRDDARRRAEHAALLLP HQGLLHHEDAIQAWSTWDDLRSQHEAKVASVFRTGAAWERHLATSPHRDLAPASAPSLPG AETLVVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHASLLRAAIPSIRRIQEILY EVDPDKASKGAFVGSRDWIGSFEIMLVLQKYLPGLECTIKRLERGQDLVTDSSVQLLLIE HFRSPRAAPVMIGGSSYAHTILGVHANIHTMEAQYLILDPHYSAYPTQIKTAIKKGYVGW KEASKFFEAGSWYNLCIPRVDLFDPR

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.33.4000424 SEHFRSPRAA0.992unspLmxM.33.4000424 SEHFRSPRAA0.992unspLmxM.33.4000424 SEHFRSPRAA0.992unspLmxM.33.4000111 SRGDVSAVET0.991unspLmxM.33.4000285 SHLATSPHRD0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India