LmxM.34.1390 | Zn-finger in Ran binding protein and others/OTU-like cysteine protease, putative

UniProt_ID: E9B618

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0051286
Curated_GO_Components: cell tip
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmxM.34.1390	OTHER	0.999977	0.000002	0.000021

No Results

Fasta :-
>LmxM.34.1390 MEYLDNLLNRKIERERLSAGGIDASSSSAASAAGTSGKDVEGPGTTGDRQLKSAAPRLCW LCNRTSPLRFRLQGGIHLCFTCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERAV SMSSPTEELLASMYGEVIEPQQASFVMSSSMMRLRREEEERRLLSATQRPHSGGAASFTK SFKSFWNCPLCTFLNAAVARECEACGFVNPGEVTCPVCKARCSLGMISTSSPEENPASRC KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGA YNTPGDILVGQAKIDQETKYVGMVARQQSAAQRRKGGNKDHDHNRGDSRAAAGGAAEAKA DDQIVFGVNDAHTLEELERQKQIANNEKRLLSRLNQLNISRNLQKTDGNCLFSALANQLF GQPRLHYLVRSLATAYMSEHPEDYAILFDGAAEWKKYLTTMKEQGTWGDELCLNAAARCF RVNIHVITSDQERWHIVFQHDQLGRTRTIRSDEAARETSMAQTFTTYEGVSLFLAYLSPV HYDDITPSPVAHLQLGELLSGELNKRMKRNQTTHSPSESGSSTPASASAGPSGGVRWADA SNFSHLPSHLLPAPPAKLRTKSSDDIVKSCLESSSVPNTAIPQVPRSRPHSCKPNKYKSS EPPSPASLHSLPNEYTC
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/659 Sequence name : 659 Sequence length : 677 VALUES OF COMPUTED PARAMETERS Coef20 : 3.850 CoefTot : 0.000 ChDiff : 8 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.582 0.309 0.496 MesoH : -0.333 0.309 -0.227 0.151 MuHd_075 : 39.245 23.582 10.391 9.204 MuHd_095 : 28.858 20.200 7.845 6.422 MuHd_100 : 27.054 17.520 6.839 5.378 MuHd_105 : 24.318 17.237 6.086 4.548 Hmax_075 : 3.200 10.300 -0.107 4.040 Hmax_095 : -6.200 7.200 -2.984 2.720 Hmax_100 : -4.300 5.800 -3.204 1.820 Hmax_105 : -8.700 4.100 -3.859 -0.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7994 0.2006 DFMC : 0.9067 0.0933

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 677 LmxM.34.1390 MEYLDNLLNRKIERERLSAGGIDASSSSAASAAGTSGKDVEGPGTTGDRQLKSAAPRLCWLCNRTSPLRFRLQGGIHLCF 80 TCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERAVSMSSPTEELLASMYGEVIEPQQASFVMSSSMMRLRREEEE 160 RRLLSATQRPHSGGAASFTKSFKSFWNCPLCTFLNAAVARECEACGFVNPGEVTCPVCKARCSLGMISTSSPEENPASRC 240 KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGAYNTPGDILVGQAKIDQETKY 320 VGMVARQQSAAQRRKGGNKDHDHNRGDSRAAAGGAAEAKADDQIVFGVNDAHTLEELERQKQIANNEKRLLSRLNQLNIS 400 RNLQKTDGNCLFSALANQLFGQPRLHYLVRSLATAYMSEHPEDYAILFDGAAEWKKYLTTMKEQGTWGDELCLNAAARCF 480 RVNIHVITSDQERWHIVFQHDQLGRTRTIRSDEAARETSMAQTFTTYEGVSLFLAYLSPVHYDDITPSPVAHLQLGELLS 560 GELNKRMKRNQTTHSPSESGSSTPASASAGPSGGVRWADASNFSHLPSHLLPAPPAKLRTKSSDDIVKSCLESSSVPNTA 640 IPQVPRSRPHSCKPNKYKSSEPPSPASLHSLPNEYTC 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...............................P................................................ 320 ................................................................................ 400 ................................................................................ 480 .............................P.................................................. 560 ................................................................................ 640 ..................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.1390 10 LDNLLNR|KI 0.131 . LmxM.34.1390 11 DNLLNRK|IE 0.066 . LmxM.34.1390 14 LNRKIER|ER 0.083 . LmxM.34.1390 16 RKIERER|LS 0.096 . LmxM.34.1390 38 AAGTSGK|DV 0.134 . LmxM.34.1390 49 PGTTGDR|QL 0.074 . LmxM.34.1390 52 TGDRQLK|SA 0.239 . LmxM.34.1390 57 LKSAAPR|LC 0.108 . LmxM.34.1390 64 LCWLCNR|TS 0.066 . LmxM.34.1390 69 NRTSPLR|FR 0.091 . LmxM.34.1390 71 TSPLRFR|LQ 0.108 . LmxM.34.1390 84 LCFTCFR|AS 0.082 . LmxM.34.1390 100 IINTPAR|RA 0.153 . LmxM.34.1390 101 INTPARR|AS 0.139 . LmxM.34.1390 106 RRASDAR|FL 0.147 . LmxM.34.1390 109 SDARFLK|LI 0.219 . LmxM.34.1390 118 GSIENER|AV 0.130 . LmxM.34.1390 153 MSSSMMR|LR 0.097 . LmxM.34.1390 155 SSMMRLR|RE 0.099 . LmxM.34.1390 156 SMMRLRR|EE 0.421 . LmxM.34.1390 161 RREEEER|RL 0.083 . LmxM.34.1390 162 REEEERR|LL 0.123 . LmxM.34.1390 169 LLSATQR|PH 0.138 . LmxM.34.1390 180 GAASFTK|SF 0.079 . LmxM.34.1390 183 SFTKSFK|SF 0.079 . LmxM.34.1390 200 LNAAVAR|EC 0.163 . LmxM.34.1390 219 VTCPVCK|AR 0.061 . LmxM.34.1390 221 CPVCKAR|CS 0.131 . LmxM.34.1390 239 EENPASR|CK 0.103 . LmxM.34.1390 241 NPASRCK|TG 0.070 . LmxM.34.1390 252 HCIWNCR|EC 0.103 . LmxM.34.1390 264 NTLDGDR|CT 0.072 . LmxM.34.1390 269 DRCTSCR|QP 0.088 . LmxM.34.1390 272 TSCRQPR|YW 0.513 *ProP* LmxM.34.1390 287 ALHHMAR|GE 0.130 . LmxM.34.1390 293 RGEDGLR|YC 0.073 . LmxM.34.1390 313 ILVGQAK|ID 0.061 . LmxM.34.1390 319 KIDQETK|YV 0.099 . LmxM.34.1390 326 YVGMVAR|QQ 0.142 . LmxM.34.1390 333 QQSAAQR|RK 0.116 . LmxM.34.1390 334 QSAAQRR|KG 0.219 . LmxM.34.1390 335 SAAQRRK|GG 0.095 . LmxM.34.1390 339 RRKGGNK|DH 0.088 . LmxM.34.1390 345 KDHDHNR|GD 0.137 . LmxM.34.1390 349 HNRGDSR|AA 0.129 . LmxM.34.1390 359 GGAAEAK|AD 0.092 . LmxM.34.1390 379 TLEELER|QK 0.091 . LmxM.34.1390 381 EELERQK|QI 0.061 . LmxM.34.1390 388 QIANNEK|RL 0.064 . LmxM.34.1390 389 IANNEKR|LL 0.190 . LmxM.34.1390 393 EKRLLSR|LN 0.074 . LmxM.34.1390 401 NQLNISR|NL 0.075 . LmxM.34.1390 405 ISRNLQK|TD 0.083 . LmxM.34.1390 424 QLFGQPR|LH 0.084 . LmxM.34.1390 430 RLHYLVR|SL 0.209 . LmxM.34.1390 455 DGAAEWK|KY 0.061 . LmxM.34.1390 456 GAAEWKK|YL 0.131 . LmxM.34.1390 462 KYLTTMK|EQ 0.069 . LmxM.34.1390 478 CLNAAAR|CF 0.120 . LmxM.34.1390 481 AAARCFR|VN 0.272 . LmxM.34.1390 493 ITSDQER|WH 0.109 . LmxM.34.1390 505 QHDQLGR|TR 0.067 . LmxM.34.1390 507 DQLGRTR|TI 0.086 . LmxM.34.1390 510 GRTRTIR|SD 0.598 *ProP* LmxM.34.1390 516 RSDEAAR|ET 0.116 . LmxM.34.1390 565 LSGELNK|RM 0.066 . LmxM.34.1390 566 SGELNKR|MK 0.162 . LmxM.34.1390 568 ELNKRMK|RN 0.063 . LmxM.34.1390 569 LNKRMKR|NQ 0.487 . LmxM.34.1390 596 GPSGGVR|WA 0.187 . LmxM.34.1390 617 LPAPPAK|LR 0.072 . LmxM.34.1390 619 APPAKLR|TK 0.080 . LmxM.34.1390 621 PAKLRTK|SS 0.105 . LmxM.34.1390 628 SSDDIVK|SC 0.069 . LmxM.34.1390 646 AIPQVPR|SR 0.097 . LmxM.34.1390 648 PQVPRSR|PH 0.085 . LmxM.34.1390 653 SRPHSCK|PN 0.070 . LmxM.34.1390 656 HSCKPNK|YK 0.087 . LmxM.34.1390 658 CKPNKYK|SS 0.101 . ____________________________^_________________

Fasta :-
>LmxM.34.1390 ATGGAGTACCTAGATAATCTCTTGAACAGGAAGATTGAGCGGGAGCGGCTCAGCGCGGGC GGTATTGACGCGTCGTCATCGTCTGCAGCTTCGGCTGCCGGAACTAGCGGCAAAGATGTT GAAGGACCGGGCACTACTGGGGATAGGCAGCTCAAGTCTGCGGCACCGCGACTGTGTTGG CTCTGCAACCGAACAAGTCCCTTGCGCTTCCGTTTACAAGGAGGTATCCACCTCTGCTTT ACTTGCTTCCGGGCGTCGTACTTGTCGCTGCTTCTCCCCATCATCAACACACCTGCCAGG CGCGCGAGTGACGCGAGATTCTTGAAGCTGATTGGCAGCATTGAGAATGAGAGAGCAGTG TCCATGTCGTCTCCAACTGAGGAGTTACTCGCCAGCATGTACGGCGAGGTAATTGAGCCA CAACAGGCATCGTTCGTGATGAGCTCGTCCATGATGCGGCTGCGGCGAGAGGAGGAGGAG AGGCGCCTACTGTCGGCGACGCAGCGCCCTCACAGCGGTGGTGCCGCCAGCTTCACGAAG AGCTTCAAATCCTTTTGGAATTGTCCCCTGTGTACCTTCCTGAACGCGGCCGTCGCGCGC GAGTGCGAGGCGTGCGGGTTCGTTAATCCGGGCGAGGTCACCTGCCCCGTCTGCAAGGCT CGCTGCTCCCTCGGCATGATAAGCACCTCGTCGCCCGAGGAGAACCCCGCCAGCAGGTGC AAGACCGGCGAGCCTCATTGCATCTGGAACTGCCGCGAGTGCGGCGGGCTCAACACCCTC GACGGTGACCGCTGCACGTCGTGCCGCCAGCCGCGCTACTGGGCATGCTCGCAGTGCACG GCACTGCACCACATGGCGCGTGGCGAGGATGGCTTGCGCTACTGTCCCACCTGCGGCGCC TACAACACCCCGGGTGACATCTTGGTTGGTCAGGCAAAGATCGACCAAGAGACCAAGTAT GTGGGTATGGTGGCGAGGCAGCAGAGTGCGGCGCAGCGGCGCAAGGGCGGCAACAAGGAT CATGACCACAACCGCGGTGACTCACGGGCTGCAGCAGGCGGTGCTGCCGAGGCGAAAGCC GACGACCAAATTGTCTTCGGTGTTAACGACGCCCATACGCTGGAGGAGCTGGAGCGGCAG AAGCAAATCGCAAACAATGAAAAACGGCTGCTTTCCCGCCTGAACCAGTTGAACATTTCC CGAAACCTGCAGAAGACGGACGGCAACTGCCTCTTCAGTGCTCTGGCGAACCAGCTCTTT GGGCAGCCACGGCTGCATTACCTCGTCCGCTCTCTCGCTACCGCGTACATGAGCGAGCAC CCAGAAGACTACGCCATCCTCTTCGACGGCGCGGCGGAGTGGAAGAAGTACCTGACAACG ATGAAGGAGCAGGGAACCTGGGGTGATGAGCTATGCCTCAACGCTGCCGCCCGTTGCTTT CGGGTTAACATCCACGTCATCACGAGCGACCAGGAGCGCTGGCACATTGTGTTCCAGCAC GACCAGCTAGGGCGCACGCGCACGATTCGCAGCGACGAGGCTGCGAGGGAGACCAGCATG GCGCAGACTTTTACCACGTATGAAGGTGTGTCGCTGTTTCTCGCCTACCTTTCCCCAGTG CATTACGACGACATCACCCCCTCACCTGTGGCACACCTCCAGCTTGGCGAGTTGCTCAGC GGGGAGCTGAACAAGCGCATGAAGCGCAATCAGACGACACACAGTCCCAGTGAAAGTGGT AGCAGCACTCCGGCATCAGCATCAGCAGGCCCCAGCGGCGGAGTCCGCTGGGCAGATGCT TCCAACTTTTCACACCTGCCTTCCCATCTGCTTCCCGCGCCTCCGGCTAAACTGCGCACG AAGTCGTCTGATGACATTGTGAAGTCGTGCCTGGAGTCATCGAGCGTGCCAAACACGGCG ATACCCCAGGTGCCACGCTCGCGCCCGCATTCCTGCAAGCCGAACAAATACAAGAGTTCG GAGCCGCCGTCGCCGGCTAGCTTACACAGCTTGCCTAACGAGTACACATGCTAG
Download Fasta

Fasta :-

MEYLDNLLNRKIERERLSAGGIDASSSSAASAAGTSGKDVEGPGTTGDRQLKSAAPRLCW LCNRTSPLRFRLQGGIHLCFTCFRASYLSLLLPIINTPARRASDARFLKLIGSIENERAV SMSSPTEELLASMYGEVIEPQQASFVMSSSMMRLRREEEERRLLSATQRPHSGGAASFTK SFKSFWNCPLCTFLNAAVARECEACGFVNPGEVTCPVCKARCSLGMISTSSPEENPASRC KTGEPHCIWNCRECGGLNTLDGDRCTSCRQPRYWACSQCTALHHMARGEDGLRYCPTCGA YNTPGDILVGQAKIDQETKYVGMVARQQSAAQRRKGGNKDHDHNRGDSRAAAGGAAEAKA DDQIVFGVNDAHTLEELERQKQIANNEKRLLSRLNQLNISRNLQKTDGNCLFSALANQLF GQPRLHYLVRSLATAYMSEHPEDYAILFDGAAEWKKYLTTMKEQGTWGDELCLNAAARCF RVNIHVITSDQERWHIVFQHDQLGRTRTIRSDEAARETSMAQTFTTYEGVSLFLAYLSPV HYDDITPSPVAHLQLGELLSGELNKRMKRNQTTHSPSESGSSTPASASAGPSGGVRWADA SNFSHLPSHLLPAPPAKLRTKSSDDIVKSCLESSSVPNTAIPQVPRSRPHSCKPNKYKSS EPPSPASLHSLPNEYTC

Growth factor receptor domain

title: Zn binding site
coordinates: C188-C205

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LmxM.34.1390	103 S	ARRASDARF	0.991	unsp	LmxM.34.1390	103 S	ARRASDARF	0.991	unsp	LmxM.34.1390	103 S	ARRASDARF	0.991	unsp	LmxM.34.1390	124 S	VSMSSPTEE	0.995	unsp	LmxM.34.1390	172 S	QRPHSGGAA	0.997	unsp	LmxM.34.1390	231 S	ISTSSPEEN	0.998	unsp	LmxM.34.1390	575 S	QTTHSPSES	0.996	unsp	LmxM.34.1390	577 S	THSPSESGS	0.991	unsp	LmxM.34.1390	622 S	LRTKSSDDI	0.997	unsp	LmxM.34.1390	651 S	SRPHSCKPN	0.998	unsp	LmxM.34.1390	659 S	NKYKSSEPP	0.993	unsp	LmxM.34.1390	18 S	RERLSAGGI	0.993	unsp	LmxM.34.1390	36 S	AAGTSGKDV	0.996	unsp

LmxM.34.1390 | Zn-finger in Ran binding protein and others/OTU-like cysteine protease, putative

ID's

UniProt_ID: E9B618

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0051286

Curated_GO_Components: cell tip

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Growth factor receptor domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India