LmxM.34.1580 | metacaspase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

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  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0051286      GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  cell tip      ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

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  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.1580OTHER0.6189000.3774440.003655
No Results

  • Fasta :-

    >LmxM.34.1580 MADFLDILGIGAVATLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGG RVRALFIGINYTGTRNALRGCVNDVGSMLGTLQQITFPISECCILVDDPSFPGFSAMPTR ENIIKHMLWLTGDVRPGDVLFFHFSGHGGQTKARRDTEEKYDQCLIPLDHIENGSILDDD LFLMLVAPLPPGVRMTCVFDCCHSASMLDLPFSYVTPRVGGGGAREYMQQVRRGNFSNGD VVMFSGCTDSGTSADVQNGGHANGAATLAFTWSLLNTHGFSYLNILLKTREELRKKGRVQ VPQLTSSKPIDLYKPFSLFGMITVNTSMMHCVPQQYQQPPQSLPPQAMPPPMGYPAYVPR PPQSYYPPPQRRVWGSGYPAQEYLAQRIPVQQATPGVSGCPTSQYLPAPPSAPYAPPPPA QYGPQQPPPAQYTFGRLPPG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/596 Sequence name : 596 Sequence length : 440 VALUES OF COMPUTED PARAMETERS Coef20 : 3.998 CoefTot : 0.141 ChDiff : 6 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.718 2.035 0.277 0.759 MesoH : -0.276 0.494 -0.206 0.243 MuHd_075 : 5.099 4.364 0.652 1.165 MuHd_095 : 21.787 14.562 4.516 3.423 MuHd_100 : 19.619 6.900 3.028 1.444 MuHd_105 : 20.291 4.440 2.944 2.187 Hmax_075 : 15.633 17.100 2.759 5.740 Hmax_095 : 18.300 20.475 3.609 6.597 Hmax_100 : 18.300 17.200 2.797 5.710 Hmax_105 : 15.700 18.667 3.316 6.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9717 0.0283 DFMC : 0.9866 0.0134
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 440 LmxM.34.1580 MADFLDILGIGAVATLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGGRVRALFIGINYTGTRNALRG 80 CVNDVGSMLGTLQQITFPISECCILVDDPSFPGFSAMPTRENIIKHMLWLTGDVRPGDVLFFHFSGHGGQTKARRDTEEK 160 YDQCLIPLDHIENGSILDDDLFLMLVAPLPPGVRMTCVFDCCHSASMLDLPFSYVTPRVGGGGAREYMQQVRRGNFSNGD 240 VVMFSGCTDSGTSADVQNGGHANGAATLAFTWSLLNTHGFSYLNILLKTREELRKKGRVQVPQLTSSKPIDLYKPFSLFG 320 MITVNTSMMHCVPQQYQQPPQSLPPQAMPPPMGYPAYVPRPPQSYYPPPQRRVWGSGYPAQEYLAQRIPVQQATPGVSGC 400 PTSQYLPAPPSAPYAPPPPAQYGPQQPPPAQYTFGRLPPG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.1580 29 GLLLVDR|PK 0.080 . LmxM.34.1580 31 LLVDRPK|RV 0.072 . LmxM.34.1580 32 LVDRPKR|VD 0.384 . LmxM.34.1580 39 VDINAGR|RL 0.077 . LmxM.34.1580 40 DINAGRR|LI 0.161 . LmxM.34.1580 46 RLIHTVR|PI 0.105 . LmxM.34.1580 52 RPIIPYR|AP 0.096 . LmxM.34.1580 61 VPYTGGR|VR 0.069 . LmxM.34.1580 63 YTGGRVR|AL 0.113 . LmxM.34.1580 75 INYTGTR|NA 0.087 . LmxM.34.1580 79 GTRNALR|GC 0.089 . LmxM.34.1580 120 FSAMPTR|EN 0.105 . LmxM.34.1580 125 TRENIIK|HM 0.070 . LmxM.34.1580 135 WLTGDVR|PG 0.076 . LmxM.34.1580 152 GHGGQTK|AR 0.070 . LmxM.34.1580 154 GGQTKAR|RD 0.099 . LmxM.34.1580 155 GQTKARR|DT 0.291 . LmxM.34.1580 160 RRDTEEK|YD 0.062 . LmxM.34.1580 194 PLPPGVR|MT 0.073 . LmxM.34.1580 218 FSYVTPR|VG 0.109 . LmxM.34.1580 225 VGGGGAR|EY 0.104 . LmxM.34.1580 232 EYMQQVR|RG 0.073 . LmxM.34.1580 233 YMQQVRR|GN 0.164 . LmxM.34.1580 288 YLNILLK|TR 0.061 . LmxM.34.1580 290 NILLKTR|EE 0.066 . LmxM.34.1580 294 KTREELR|KK 0.095 . LmxM.34.1580 295 TREELRK|KG 0.099 . LmxM.34.1580 296 REELRKK|GR 0.089 . LmxM.34.1580 298 ELRKKGR|VQ 0.114 . LmxM.34.1580 308 PQLTSSK|PI 0.061 . LmxM.34.1580 314 KPIDLYK|PF 0.072 . LmxM.34.1580 360 YPAYVPR|PP 0.098 . LmxM.34.1580 371 YYPPPQR|RV 0.098 . LmxM.34.1580 372 YPPPQRR|VW 0.246 . LmxM.34.1580 387 QEYLAQR|IP 0.075 . LmxM.34.1580 436 AQYTFGR|LP 0.089 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.1580 ATGGCAGACTTTCTTGATATTTTGGGGATAGGGGCCGTCGCCACTCTGATCCCGATGCTC GCGAACGGCCTTCTTCTGGTTGACCGGCCCAAACGGGTTGACATTAATGCCGGAAGGCGG CTCATTCACACAGTGCGGCCCATAATTCCCTACCGTGCCCCGGTGCCGTACACCGGCGGC CGTGTCCGTGCGCTTTTCATCGGAATCAACTACACGGGTACGCGCAACGCACTGCGTGGC TGCGTCAACGATGTGGGCTCGATGCTGGGAACGCTGCAGCAGATCACCTTCCCGATTAGC GAGTGCTGCATCCTCGTCGACGACCCGTCGTTCCCCGGCTTCTCCGCCATGCCCACCCGC GAAAACATCATCAAGCACATGCTGTGGCTGACCGGCGACGTACGCCCCGGTGATGTCCTG TTTTTTCACTTCTCCGGCCACGGCGGACAAACCAAGGCGAGGCGAGACACGGAAGAGAAG TACGACCAGTGTCTCATCCCACTCGACCACATCGAGAACGGCAGCATTCTCGACGATGAT CTCTTCCTCATGCTCGTAGCCCCGCTGCCGCCTGGGGTGCGCATGACGTGCGTCTTTGAC TGCTGTCACTCAGCCAGCATGCTGGATCTACCCTTCAGTTACGTGACGCCGAGAGTAGGC GGCGGCGGGGCACGCGAGTACATGCAACAGGTACGCCGCGGCAACTTCTCGAACGGCGAC GTTGTCATGTTCAGCGGGTGCACGGATAGCGGCACCAGCGCAGATGTGCAGAACGGCGGC CACGCGAACGGTGCGGCCACTCTCGCCTTCACGTGGTCCCTTCTGAACACGCATGGGTTC TCCTACCTTAATATTCTTCTCAAGACACGAGAGGAGCTGCGCAAAAAAGGTCGGGTGCAG GTGCCGCAGCTCACCAGCTCGAAGCCAATTGATCTGTACAAGCCCTTCTCCCTCTTTGGC ATGATTACGGTGAACACATCCATGATGCATTGCGTGCCGCAGCAGTACCAGCAACCTCCG CAGAGCCTCCCGCCGCAGGCGATGCCGCCCCCGATGGGTTACCCAGCCTACGTACCGCGG CCGCCGCAAAGCTACTACCCTCCGCCGCAGCGTCGAGTTTGGGGTTCTGGCTACCCAGCG CAGGAATACCTGGCGCAAAGGATACCGGTGCAGCAGGCAACTCCTGGTGTGTCGGGGTGT CCTACATCGCAGTACTTACCTGCACCTCCGTCAGCACCGTACGCGCCACCTCCACCCGCG CAGTACGGGCCACAGCAGCCCCCACCAGCCCAGTACACGTTCGGCCGGCTCCCGCCTGGG TAA
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  • Fasta :-

    MADFLDILGIGAVATLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGG RVRALFIGINYTGTRNALRGCVNDVGSMLGTLQQITFPISECCILVDDPSFPGFSAMPTR ENIIKHMLWLTGDVRPGDVLFFHFSGHGGQTKARRDTEEKYDQCLIPLDHIENGSILDDD LFLMLVAPLPPGVRMTCVFDCCHSASMLDLPFSYVTPRVGGGGAREYMQQVRRGNFSNGD VVMFSGCTDSGTSADVQNGGHANGAATLAFTWSLLNTHGFSYLNILLKTREELRKKGRVQ VPQLTSSKPIDLYKPFSLFGMITVNTSMMHCVPQQYQQPPQSLPPQAMPPPMGYPAYVPR PPQSYYPPPQRRVWGSGYPAQEYLAQRIPVQQATPGVSGCPTSQYLPAPPSAPYAPPPPA QYGPQQPPPAQYTFGRLPPG

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India