LmxM.34.2350 | aminopeptidase P, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004177      GO:0030145      

  • Computed_GO_Functions:  aminopeptidase activity      manganese ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.2350OTHER0.9996400.0002830.000077
No Results

  • Fasta :-

    >LmxM.34.2350 MSAHDKSLAYPFPISMKMYREQCERLGASLQQAFPEGGHAAVLQAASEVPVNSTDCNYLF VQESYFNYLFGAEIPDAYGAVLAGGKTIFFIPRLPVDFATWMGPLPTPHGVKAQLEVEEV HYVDEMEQVLMGCGVHTAEVLKGTNTDSGLEVLQAKLPEGTALRTSTDYLYRALSSQRCY KTALEADVLKYVCQVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKIIYNAVL DAHDRVMRTMKPGVEWMDMHLLAIRTICTHLIEAGILKGDIETLMAKEIMQYFQPHGLGH LLGIDVHDVGGYMEGCPERPTRKDCCRLRTARPIEEGLYMTIEPGCYFNKALLEMAKANP DIQEHLNMEKLEVYANFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE VYHN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/452 Sequence name : 452 Sequence length : 484 VALUES OF COMPUTED PARAMETERS Coef20 : 3.820 CoefTot : -0.648 ChDiff : -19 ZoneTo : 20 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.882 1.547 0.078 0.532 MesoH : -0.069 0.401 -0.265 0.327 MuHd_075 : 26.869 15.779 5.402 6.024 MuHd_095 : 28.302 8.791 6.407 4.596 MuHd_100 : 28.856 10.234 6.270 5.285 MuHd_105 : 22.976 11.017 5.601 4.910 Hmax_075 : 7.525 6.737 -0.667 3.815 Hmax_095 : 6.738 2.100 -0.076 2.573 Hmax_100 : 7.300 4.700 -1.148 2.740 Hmax_105 : 7.817 5.367 -1.148 3.127 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9588 0.0412 DFMC : 0.9500 0.0500
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 484 LmxM.34.2350 MSAHDKSLAYPFPISMKMYREQCERLGASLQQAFPEGGHAAVLQAASEVPVNSTDCNYLFVQESYFNYLFGAEIPDAYGA 80 VLAGGKTIFFIPRLPVDFATWMGPLPTPHGVKAQLEVEEVHYVDEMEQVLMGCGVHTAEVLKGTNTDSGLEVLQAKLPEG 160 TALRTSTDYLYRALSSQRCYKTALEADVLKYVCQVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA 240 TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKIIYNAVLDAHDRVMRTMKPGVEWMDMH 320 LLAIRTICTHLIEAGILKGDIETLMAKEIMQYFQPHGLGHLLGIDVHDVGGYMEGCPERPTRKDCCRLRTARPIEEGLYM 400 TIEPGCYFNKALLEMAKANPDIQEHLNMEKLEVYANFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE 480 VYHN 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.2350 6 -MSAHDK|SL 0.095 . LmxM.34.2350 17 PFPISMK|MY 0.061 . LmxM.34.2350 20 ISMKMYR|EQ 0.106 . LmxM.34.2350 25 YREQCER|LG 0.074 . LmxM.34.2350 86 AVLAGGK|TI 0.059 . LmxM.34.2350 93 TIFFIPR|LP 0.084 . LmxM.34.2350 112 PTPHGVK|AQ 0.062 . LmxM.34.2350 142 HTAEVLK|GT 0.066 . LmxM.34.2350 156 LEVLQAK|LP 0.059 . LmxM.34.2350 164 PEGTALR|TS 0.078 . LmxM.34.2350 172 STDYLYR|AL 0.101 . LmxM.34.2350 178 RALSSQR|CY 0.089 . LmxM.34.2350 181 SSQRCYK|TA 0.150 . LmxM.34.2350 190 LEADVLK|YV 0.095 . LmxM.34.2350 202 SSAAHVK|VM 0.075 . LmxM.34.2350 208 KVMQIAK|PG 0.065 . LmxM.34.2350 231 YYNGGCR|RV 0.084 . LmxM.34.2350 232 YNGGCRR|VS 0.128 . LmxM.34.2350 272 DMGGNYR|GY 0.088 . LmxM.34.2350 287 SFPVNGK|FT 0.073 . LmxM.34.2350 293 KFTEAQK|II 0.061 . LmxM.34.2350 305 VLDAHDR|VM 0.078 . LmxM.34.2350 308 AHDRVMR|TM 0.276 . LmxM.34.2350 311 RVMRTMK|PG 0.143 . LmxM.34.2350 325 MHLLAIR|TI 0.082 . LmxM.34.2350 338 IEAGILK|GD 0.069 . LmxM.34.2350 347 IETLMAK|EI 0.065 . LmxM.34.2350 379 MEGCPER|PT 0.085 . LmxM.34.2350 382 CPERPTR|KD 0.282 . LmxM.34.2350 383 PERPTRK|DC 0.098 . LmxM.34.2350 387 TRKDCCR|LR 0.093 . LmxM.34.2350 389 KDCCRLR|TA 0.133 . LmxM.34.2350 392 CRLRTAR|PI 0.497 . LmxM.34.2350 410 PGCYFNK|AL 0.061 . LmxM.34.2350 417 ALLEMAK|AN 0.071 . LmxM.34.2350 430 EHLNMEK|LE 0.055 . LmxM.34.2350 441 ANFGGVR|IE 0.113 . LmxM.34.2350 450 SDVLVTK|DG 0.064 . LmxM.34.2350 461 NYTLVPR|TV 0.161 . LmxM.34.2350 468 TVEEIER|TM 0.085 . LmxM.34.2350 477 AGAPFTK|EV 0.090 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.2350 ATGTCCGCCCACGATAAGAGCTTGGCGTACCCCTTCCCCATCTCGATGAAGATGTATCGA GAGCAGTGTGAGCGGCTGGGCGCGTCGCTCCAGCAGGCGTTCCCGGAGGGTGGCCACGCG GCGGTGCTGCAGGCCGCCTCTGAGGTGCCGGTGAACTCGACGGACTGCAACTACCTCTTC GTGCAGGAGAGCTACTTCAACTACCTCTTCGGCGCGGAGATTCCGGACGCGTACGGCGCT GTGCTCGCGGGCGGCAAAACCATCTTCTTCATTCCGCGGCTGCCGGTGGATTTTGCGACG TGGATGGGCCCGCTGCCGACACCGCATGGTGTGAAGGCGCAGCTGGAGGTGGAAGAGGTG CACTACGTGGACGAGATGGAGCAGGTGCTGATGGGCTGTGGGGTACACACCGCCGAGGTG CTGAAAGGCACGAACACGGACAGCGGTCTCGAGGTGCTGCAGGCGAAGCTGCCAGAGGGG ACTGCGCTGAGAACGTCCACCGACTACCTTTATCGCGCGCTGAGCTCGCAGCGCTGCTAC AAGACGGCCCTTGAGGCGGATGTGCTCAAGTATGTGTGCCAGGTGTCGAGCGCCGCGCAC GTCAAAGTGATGCAGATTGCGAAGCCCGGCATGTCGCAGCACCATCTCGAGTCTACATTC CTCCACGACGTGTACTACAATGGCGGCTGCCGTCGTGTAAGCTACACTTGCATCTGCGCC ACGGGCCCCCACGGTGCTACGCTGCATTACCCGGACAACAACTGCGTGATCGAGGACGGC ACGATGGCGCTGCTGGACATGGGCGGCAACTACCGCGGCTACGCCGCCGATATTACCTGC AGCTTCCCTGTGAACGGCAAGTTCACCGAGGCGCAGAAGATCATTTACAACGCGGTGCTC GACGCGCACGACAGGGTGATGCGCACGATGAAGCCGGGTGTTGAGTGGATGGACATGCAC CTGCTCGCCATCCGCACAATTTGCACGCACCTGATCGAGGCGGGCATTCTCAAAGGCGAC ATCGAAACGCTCATGGCGAAGGAAATCATGCAGTACTTCCAACCACACGGCCTCGGCCAC CTTCTCGGTATAGACGTGCACGACGTTGGCGGCTACATGGAGGGTTGCCCTGAGCGGCCG ACGAGGAAGGACTGCTGCCGTCTGCGCACTGCGCGCCCGATCGAGGAGGGGCTTTACATG ACCATCGAGCCTGGCTGCTACTTTAACAAGGCACTGCTGGAGATGGCGAAGGCGAACCCG GATATCCAGGAGCACCTGAACATGGAGAAGCTCGAGGTGTACGCGAACTTTGGTGGCGTG CGCATCGAGAGCGATGTCCTGGTCACGAAGGACGGCGTGGTGAACTACACTCTAGTGCCA CGCACGGTGGAAGAGATCGAGAGAACGATGGCGGGTGCGCCCTTCACGAAGGAGGTGGAG GTGTACCACAACTGA
  • Download Fasta

  • Fasta :-

    MSAHDKSLAYPFPISMKMYREQCERLGASLQQAFPEGGHAAVLQAASEVPVNSTDCNYLF VQESYFNYLFGAEIPDAYGAVLAGGKTIFFIPRLPVDFATWMGPLPTPHGVKAQLEVEEV HYVDEMEQVLMGCGVHTAEVLKGTNTDSGLEVLQAKLPEGTALRTSTDYLYRALSSQRCY KTALEADVLKYVCQVSSAAHVKVMQIAKPGMSQHHLESTFLHDVYYNGGCRRVSYTCICA TGPHGATLHYPDNNCVIEDGTMALLDMGGNYRGYAADITCSFPVNGKFTEAQKIIYNAVL DAHDRVMRTMKPGVEWMDMHLLAIRTICTHLIEAGILKGDIETLMAKEIMQYFQPHGLGH LLGIDVHDVGGYMEGCPERPTRKDCCRLRTARPIEEGLYMTIEPGCYFNKALLEMAKANP DIQEHLNMEKLEVYANFGGVRIESDVLVTKDGVVNYTLVPRTVEEIERTMAGAPFTKEVE VYHN

  • title: active site
  • coordinates: H249,D266,D277,H360,E403,E443
No Results
No Results
IDSitePeptideScoreMethod
LmxM.34.2350234 SCRRVSYTCI0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India