LmxM.34.3450 | DNA-repair protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      GO:0031981      GO:0005634      

  • Curated_GO_Components:  cytoplasm      nuclear lumen      nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.34.3450OTHER0.9999820.0000170.000001
No Results

  • Fasta :-

    >LmxM.34.3450 MAMVTSASVPADPAETRNATEEDGSDLATDVNEWDEVELPVAFSSAKKQEESESSSLVKK GLTDDGEGEAVKHETTYAVSTVKTEVTTTKRGEAVTVISSSVKEELVNVDGEETASNRPL MEWAQLPLVGRPRASDTWRQRDPAYEAMMEQRDLLAAKRRSERIQRVCESLFALLAVFIR ARLLWRESCHPGFVKRLLQLHVPRGRGPKRSRCEDPSRKATSAYVFLKAVATAKVLVAES MKPPHRKPSLAPAWVTCAKDAVQNNTSAAVNVLIKIINDHFKLEAPAAPASSSGRGTSVG AAAYSVAPSSAEQDFSDWSLPVKPGFLCTKIAECHCRVSADAPLELPHPLYFSLVFLALA RVAGLSCRLVVAKLAKTQLERGRAAGPAGGAANGYNDSREGGDNTADGEWEETTRRPLRV LSIFEGREKRKASRRTDASEAVRTGKGSKRQRPSAGSAEDTKDSEELKSKKLLTSCYWVE VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSAAYAYGRRLGTCR QHRFLWHDELAWDDTRELSEVLRATFNVAAPHTSSLAQRQQHRESRQLHSLMYSEAVPTT LNALHRHPLYVIDSDLARHEGVYPKDASTTVGSVKGRLVYKRSAIVSLRSRDGWLREGRS LLTEDQPAYKVVAPPTSRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL DKAPPQGIVHMTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETD SVALLRAYEEWVLLVQEQEATKRRQRAFHWWLLLAQRLLALKRLQNQYAKGLGAGAMPTQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/885 Sequence name : 885 Sequence length : 840 VALUES OF COMPUTED PARAMETERS Coef20 : 4.232 CoefTot : 0.394 ChDiff : 20 ZoneTo : 11 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.912 0.246 0.619 MesoH : -0.170 0.609 -0.209 0.261 MuHd_075 : 15.274 6.752 3.474 3.213 MuHd_095 : 1.310 3.507 0.488 1.676 MuHd_100 : 1.375 2.743 0.970 1.251 MuHd_105 : 6.013 3.727 2.212 0.346 Hmax_075 : 5.800 6.200 -0.713 2.620 Hmax_095 : 4.725 4.600 -1.010 2.080 Hmax_100 : 5.800 6.400 -0.781 2.940 Hmax_105 : 10.733 7.200 0.550 2.640 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9779 0.0221 DFMC : 0.9676 0.0324
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 840 LmxM.34.3450 MAMVTSASVPADPAETRNATEEDGSDLATDVNEWDEVELPVAFSSAKKQEESESSSLVKKGLTDDGEGEAVKHETTYAVS 80 TVKTEVTTTKRGEAVTVISSSVKEELVNVDGEETASNRPLMEWAQLPLVGRPRASDTWRQRDPAYEAMMEQRDLLAAKRR 160 SERIQRVCESLFALLAVFIRARLLWRESCHPGFVKRLLQLHVPRGRGPKRSRCEDPSRKATSAYVFLKAVATAKVLVAES 240 MKPPHRKPSLAPAWVTCAKDAVQNNTSAAVNVLIKIINDHFKLEAPAAPASSSGRGTSVGAAAYSVAPSSAEQDFSDWSL 320 PVKPGFLCTKIAECHCRVSADAPLELPHPLYFSLVFLALARVAGLSCRLVVAKLAKTQLERGRAAGPAGGAANGYNDSRE 400 GGDNTADGEWEETTRRPLRVLSIFEGREKRKASRRTDASEAVRTGKGSKRQRPSAGSAEDTKDSEELKSKKLLTSCYWVE 480 VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSAAYAYGRRLGTCRQHRFLWHDELAWDDTRELSE 560 VLRATFNVAAPHTSSLAQRQQHRESRQLHSLMYSEAVPTTLNALHRHPLYVIDSDLARHEGVYPKDASTTVGSVKGRLVY 640 KRSAIVSLRSRDGWLREGRSLLTEDQPAYKVVAPPTSRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL 720 DKAPPQGIVHMTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETDSVALLRAYEEWVLLVQEQEA 800 TKRRQRAFHWWLLLAQRLLALKRLQNQYAKGLGAGAMPTQ 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................P.................................................. 480 ................................................................................ 560 ................................................................................ 640 .P.............................................................................. 720 ................................................................................ 800 ........................................ 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.34.3450 17 ADPAETR|NA 0.101 . LmxM.34.3450 47 VAFSSAK|KQ 0.074 . LmxM.34.3450 48 AFSSAKK|QE 0.098 . LmxM.34.3450 59 ESSSLVK|KG 0.064 . LmxM.34.3450 60 SSSLVKK|GL 0.199 . LmxM.34.3450 72 GEGEAVK|HE 0.060 . LmxM.34.3450 83 YAVSTVK|TE 0.053 . LmxM.34.3450 90 TEVTTTK|RG 0.070 . LmxM.34.3450 91 EVTTTKR|GE 0.106 . LmxM.34.3450 103 VISSSVK|EE 0.064 . LmxM.34.3450 118 EETASNR|PL 0.075 . LmxM.34.3450 131 QLPLVGR|PR 0.069 . LmxM.34.3450 133 PLVGRPR|AS 0.099 . LmxM.34.3450 139 RASDTWR|QR 0.157 . LmxM.34.3450 141 SDTWRQR|DP 0.101 . LmxM.34.3450 152 EAMMEQR|DL 0.123 . LmxM.34.3450 158 RDLLAAK|RR 0.063 . LmxM.34.3450 159 DLLAAKR|RS 0.141 . LmxM.34.3450 160 LLAAKRR|SE 0.351 . LmxM.34.3450 163 AKRRSER|IQ 0.255 . LmxM.34.3450 166 RSERIQR|VC 0.202 . LmxM.34.3450 180 LLAVFIR|AR 0.078 . LmxM.34.3450 182 AVFIRAR|LL 0.081 . LmxM.34.3450 186 RARLLWR|ES 0.091 . LmxM.34.3450 195 CHPGFVK|RL 0.056 . LmxM.34.3450 196 HPGFVKR|LL 0.188 . LmxM.34.3450 204 LQLHVPR|GR 0.116 . LmxM.34.3450 206 LHVPRGR|GP 0.082 . LmxM.34.3450 209 PRGRGPK|RS 0.133 . LmxM.34.3450 210 RGRGPKR|SR 0.256 . LmxM.34.3450 212 RGPKRSR|CE 0.102 . LmxM.34.3450 218 RCEDPSR|KA 0.091 . LmxM.34.3450 219 CEDPSRK|AT 0.094 . LmxM.34.3450 228 SAYVFLK|AV 0.091 . LmxM.34.3450 234 KAVATAK|VL 0.065 . LmxM.34.3450 242 LVAESMK|PP 0.063 . LmxM.34.3450 246 SMKPPHR|KP 0.091 . LmxM.34.3450 247 MKPPHRK|PS 0.087 . LmxM.34.3450 259 AWVTCAK|DA 0.088 . LmxM.34.3450 275 AVNVLIK|II 0.074 . LmxM.34.3450 282 IINDHFK|LE 0.072 . LmxM.34.3450 295 PASSSGR|GT 0.168 . LmxM.34.3450 323 DWSLPVK|PG 0.064 . LmxM.34.3450 330 PGFLCTK|IA 0.067 . LmxM.34.3450 337 IAECHCR|VS 0.104 . LmxM.34.3450 361 VFLALAR|VA 0.083 . LmxM.34.3450 368 VAGLSCR|LV 0.114 . LmxM.34.3450 373 CRLVVAK|LA 0.091 . LmxM.34.3450 376 VVAKLAK|TQ 0.060 . LmxM.34.3450 381 AKTQLER|GR 0.086 . LmxM.34.3450 383 TQLERGR|AA 0.168 . LmxM.34.3450 399 NGYNDSR|EG 0.093 . LmxM.34.3450 415 EWEETTR|RP 0.073 . LmxM.34.3450 416 WEETTRR|PL 0.092 . LmxM.34.3450 419 TTRRPLR|VL 0.357 . LmxM.34.3450 427 LSIFEGR|EK 0.086 . LmxM.34.3450 429 IFEGREK|RK 0.054 . LmxM.34.3450 430 FEGREKR|KA 0.599 *ProP* LmxM.34.3450 431 EGREKRK|AS 0.092 . LmxM.34.3450 434 EKRKASR|RT 0.130 . LmxM.34.3450 435 KRKASRR|TD 0.142 . LmxM.34.3450 443 DASEAVR|TG 0.081 . LmxM.34.3450 446 EAVRTGK|GS 0.164 . LmxM.34.3450 449 RTGKGSK|RQ 0.059 . LmxM.34.3450 450 TGKGSKR|QR 0.169 . LmxM.34.3450 452 KGSKRQR|PS 0.115 . LmxM.34.3450 462 GSAEDTK|DS 0.072 . LmxM.34.3450 468 KDSEELK|SK 0.073 . LmxM.34.3450 470 SEELKSK|KL 0.062 . LmxM.34.3450 471 EELKSKK|LL 0.084 . LmxM.34.3450 486 EVWSAER|ES 0.064 . LmxM.34.3450 521 AVDATPR|YI 0.110 . LmxM.34.3450 525 TPRYISK|YS 0.074 . LmxM.34.3450 534 AAYAYGR|RL 0.107 . LmxM.34.3450 535 AYAYGRR|LG 0.090 . LmxM.34.3450 540 RRLGTCR|QH 0.086 . LmxM.34.3450 543 GTCRQHR|FL 0.344 . LmxM.34.3450 556 LAWDDTR|EL 0.100 . LmxM.34.3450 563 ELSEVLR|AT 0.104 . LmxM.34.3450 579 TSSLAQR|QQ 0.136 . LmxM.34.3450 583 AQRQQHR|ES 0.097 . LmxM.34.3450 586 QQHRESR|QL 0.308 . LmxM.34.3450 606 TLNALHR|HP 0.115 . LmxM.34.3450 618 IDSDLAR|HE 0.123 . LmxM.34.3450 625 HEGVYPK|DA 0.107 . LmxM.34.3450 635 TTVGSVK|GR 0.065 . LmxM.34.3450 637 VGSVKGR|LV 0.141 . LmxM.34.3450 641 KGRLVYK|RS 0.062 . LmxM.34.3450 642 GRLVYKR|SA 0.528 *ProP* LmxM.34.3450 649 SAIVSLR|SR 0.150 . LmxM.34.3450 651 IVSLRSR|DG 0.093 . LmxM.34.3450 656 SRDGWLR|EG 0.081 . LmxM.34.3450 659 GWLREGR|SL 0.341 . LmxM.34.3450 670 EDQPAYK|VV 0.063 . LmxM.34.3450 678 VAPPTSR|PF 0.064 . LmxM.34.3450 689 PSTLYGR|WQ 0.074 . LmxM.34.3450 713 SIPHHGR|TS 0.118 . LmxM.34.3450 722 WYILLDK|AP 0.064 . LmxM.34.3450 738 TQPQISR|VA 0.086 . LmxM.34.3450 741 QISRVAR|RM 0.266 . LmxM.34.3450 742 ISRVARR|MK 0.193 . LmxM.34.3450 744 RVARRMK|LD 0.111 . LmxM.34.3450 748 RMKLDFR|LA 0.087 . LmxM.34.3450 756 AVVGFER|RR 0.072 . LmxM.34.3450 757 VVGFERR|RT 0.136 . LmxM.34.3450 758 VGFERRR|TD 0.111 . LmxM.34.3450 763 RRTDEHR|RG 0.091 . LmxM.34.3450 764 RTDEHRR|GH 0.120 . LmxM.34.3450 777 INGIVVK|ET 0.070 . LmxM.34.3450 786 DSVALLR|AY 0.091 . LmxM.34.3450 802 QEQEATK|RR 0.060 . LmxM.34.3450 803 EQEATKR|RQ 0.127 . LmxM.34.3450 804 QEATKRR|QR 0.116 . LmxM.34.3450 806 ATKRRQR|AF 0.271 . LmxM.34.3450 817 WLLLAQR|LL 0.070 . LmxM.34.3450 822 QRLLALK|RL 0.056 . LmxM.34.3450 823 RLLALKR|LQ 0.146 . LmxM.34.3450 830 LQNQYAK|GL 0.100 . ____________________________^_________________

  • Fasta :-

    >LmxM.34.3450 ATGGCCATGGTGACATCCGCCAGCGTACCCGCTGACCCAGCCGAGACGCGTAACGCCACG GAGGAGGATGGGAGCGACTTGGCCACCGATGTGAATGAGTGGGATGAAGTGGAGCTTCCA GTCGCCTTTTCTTCTGCCAAGAAGCAGGAGGAAAGTGAAAGCAGCAGTTTAGTCAAGAAG GGTCTGACTGACGACGGCGAAGGTGAGGCGGTGAAGCACGAGACCACTTACGCGGTTTCA ACTGTCAAGACAGAGGTAACGACTACCAAAAGAGGTGAGGCAGTTACTGTAATATCGAGT AGCGTGAAGGAGGAACTTGTGAACGTGGACGGGGAGGAGACTGCGAGTAATCGGCCCCTG ATGGAATGGGCGCAACTGCCGCTTGTGGGACGGCCGCGCGCTTCGGATACATGGCGGCAG CGTGACCCAGCTTATGAGGCCATGATGGAGCAGAGGGATTTGCTAGCCGCAAAGCGTCGC TCAGAGCGCATTCAGCGCGTCTGCGAGTCGCTCTTCGCACTTCTGGCTGTTTTCATTCGA GCCCGTCTACTCTGGCGCGAGTCGTGTCATCCCGGTTTCGTTAAACGGCTTCTGCAGCTC CATGTGCCACGCGGAAGGGGCCCGAAGCGCTCACGCTGCGAAGATCCTTCCAGAAAGGCA ACAAGTGCTTACGTTTTTCTCAAAGCAGTAGCCACCGCAAAGGTGCTGGTGGCAGAGTCG ATGAAGCCGCCGCATCGCAAACCCTCGCTCGCCCCCGCATGGGTGACGTGCGCGAAAGAC GCGGTGCAGAATAACACCTCGGCGGCCGTGAATGTACTCATCAAGATCATCAACGACCAC TTCAAGTTGGAGGCACCGGCGGCTCCAGCTTCGTCGAGTGGACGTGGGACATCTGTTGGC GCCGCGGCGTACAGTGTTGCTCCCTCGTCTGCAGAGCAAGACTTTTCCGACTGGTCACTA CCTGTCAAACCAGGGTTTCTCTGCACGAAGATAGCAGAGTGTCATTGCCGTGTCTCCGCG GATGCGCCCCTCGAGTTGCCCCATCCTCTTTACTTTTCCCTTGTGTTTCTGGCATTGGCG CGCGTGGCGGGGCTGAGCTGCCGTCTTGTGGTGGCGAAGCTAGCCAAGACGCAGCTGGAG AGGGGCCGCGCAGCGGGGCCTGCCGGAGGCGCTGCCAATGGGTACAACGACTCACGTGAG GGCGGGGACAATACCGCAGACGGTGAGTGGGAAGAAACGACGCGCCGACCGCTGCGAGTT CTTTCCATTTTTGAAGGCCGCGAGAAGCGCAAGGCATCCCGTCGCACCGACGCCAGTGAG GCTGTTCGAACGGGCAAGGGGTCGAAGCGACAGCGGCCCTCAGCAGGGTCGGCAGAAGAC ACCAAAGACAGTGAGGAGCTCAAGTCAAAGAAACTCCTCACTTCATGCTACTGGGTGGAG GTGTGGTCCGCGGAGCGCGAGAGCTTCCTTTCTGTCAACCCGTGCCAAAGCTGTGCCACA CTCTGGGGTGCATCGTACACGTTGTCAGTCTCTGGTCACGTGGCGGTGGACGCGACGCCG CGGTACATCTCCAAGTACAGCGCCGCATACGCCTACGGTCGTCGCCTCGGCACCTGTCGG CAGCACCGATTCCTGTGGCACGACGAACTCGCCTGGGATGACACCCGTGAGCTGTCTGAG GTGCTGCGTGCTACCTTCAACGTGGCTGCGCCACACACGAGCTCGCTGGCGCAGCGGCAG CAGCACCGGGAGAGCCGGCAGCTACACTCCCTCATGTACTCGGAGGCCGTGCCCACAACG CTGAATGCTCTTCACCGCCACCCACTCTATGTGATAGACTCCGACCTTGCGCGGCATGAG GGGGTGTACCCAAAGGATGCAAGCACGACCGTGGGAAGCGTGAAGGGTCGCCTGGTGTAC AAGCGTTCCGCCATCGTGAGTCTGCGGTCTCGCGACGGGTGGTTGCGCGAGGGACGCAGC CTGCTCACGGAGGACCAGCCAGCGTACAAGGTTGTGGCACCACCCACCTCTCGTCCGTTC GCGGCACCGTCGACACTCTACGGTCGTTGGCAAACGCAGCCATTCGAGCCACTGCCACTC ACTGCAGGCGATCCTCCGAGCATTCCACATCACGGGCGGACGTCGTGGTACATCTTACTC GACAAAGCCCCGCCACAGGGAATTGTGCACATGACCCAGCCCCAGATATCTCGGGTGGCG CGCCGCATGAAGCTCGACTTCCGCTTGGCTGTGGTTGGTTTTGAGCGCCGCCGCACCGAC GAGCACCGCCGCGGGCACTGGGAGACCGTCATCAACGGCATCGTTGTCAAGGAAACTGAC AGCGTCGCACTCCTTCGCGCCTACGAGGAGTGGGTGCTGCTGGTGCAGGAGCAGGAGGCG ACGAAGCGAAGACAGCGTGCGTTCCACTGGTGGCTTTTGCTTGCGCAGCGTCTTCTGGCG TTAAAACGACTGCAGAATCAGTACGCCAAAGGGCTCGGCGCCGGCGCGATGCCGACGCAG TGA
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  • Fasta :-

    MAMVTSASVPADPAETRNATEEDGSDLATDVNEWDEVELPVAFSSAKKQEESESSSLVKK GLTDDGEGEAVKHETTYAVSTVKTEVTTTKRGEAVTVISSSVKEELVNVDGEETASNRPL MEWAQLPLVGRPRASDTWRQRDPAYEAMMEQRDLLAAKRRSERIQRVCESLFALLAVFIR ARLLWRESCHPGFVKRLLQLHVPRGRGPKRSRCEDPSRKATSAYVFLKAVATAKVLVAES MKPPHRKPSLAPAWVTCAKDAVQNNTSAAVNVLIKIINDHFKLEAPAAPASSSGRGTSVG AAAYSVAPSSAEQDFSDWSLPVKPGFLCTKIAECHCRVSADAPLELPHPLYFSLVFLALA RVAGLSCRLVVAKLAKTQLERGRAAGPAGGAANGYNDSREGGDNTADGEWEETTRRPLRV LSIFEGREKRKASRRTDASEAVRTGKGSKRQRPSAGSAEDTKDSEELKSKKLLTSCYWVE VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSAAYAYGRRLGTCR QHRFLWHDELAWDDTRELSEVLRATFNVAAPHTSSLAQRQQHRESRQLHSLMYSEAVPTT LNALHRHPLYVIDSDLARHEGVYPKDASTTVGSVKGRLVYKRSAIVSLRSRDGWLREGRS LLTEDQPAYKVVAPPTSRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL DKAPPQGIVHMTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETD SVALLRAYEEWVLLVQEQEATKRRQRAFHWWLLLAQRLLALKRLQNQYAKGLGAGAMPTQ

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.34.3450211 SGPKRSRCED0.993unspLmxM.34.3450211 SGPKRSRCED0.993unspLmxM.34.3450211 SGPKRSRCED0.993unspLmxM.34.3450217 SCEDPSRKAT0.995unspLmxM.34.3450422 SLRVLSIFEG0.992unspLmxM.34.3450433 SKRKASRRTD0.994unspLmxM.34.3450454 SRQRPSAGSA0.994unspLmxM.34.3450457 SPSAGSAEDT0.998unspLmxM.34.3450524 SPRYISKYSA0.99unspLmxM.34.3450101 SVISSSVKEE0.997unspLmxM.34.3450161 SAKRRSERIQ0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India