LmxM.36.1380 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005488      

  • Computed_GO_Functions:  binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.1380SP0.1373150.8605260.002160CS pos: 24-25. VTA-CL. Pr: 0.4715
No Results

  • Fasta :-

    >LmxM.36.1380 MWLSEWFSALFILIGHDAHVQVTACLFPCALAHAPFPKASSRIWTDRDTPHWLDGRADVC ARTKTRASKLVPMTSTLTNSNRINIPAVCRLRERNTSKTVGSGVLVAPGLLLTSATAIPT QSRATHVVATFFEGTKKNAVDVPLQPQRYYFASRYPPEMDYCLISCEEAPLFNVTPVHMA LTAKGWAPVEEGDVVLIVEHPIGGVFGTAAAPLNGKATSPSTLSETGESNFDSVQAPYVE QKRFEEVLRCRGNVSFLKSNGSWRTAGCPAFNEHGHLVGLQSQSRADGEGVVNRILSLIS IVKHLFANVQLPHLPQEDITFEDVWDTWYVTNDITRIIAILANFKGKSMAQQVTWRLCEL TAKPQLVKSIASNGGIEVILQNLSLFCSDEKLSEIGLRALWNVSIGEEAHLAAIIKREGV HTILNVVESFPANETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGFQQFRESVV LQKFALSFFATLARLNEEFACNLVQQDVIDHIIHLIEEKPKQIFLMEIVVGFVAELAQYP QTVELMCGKAPQYAAASMTYLIDLLIHIILEYKDLDSLLVSGNRALWGLGIVPTCRGIIL ENPRGIDALRISLPALIASTHR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/415 Sequence name : 415 Sequence length : 622 VALUES OF COMPUTED PARAMETERS Coef20 : 4.028 CoefTot : 0.234 ChDiff : -6 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.747 1.824 0.304 0.661 MesoH : -0.025 0.796 -0.204 0.372 MuHd_075 : 1.741 7.554 4.164 1.316 MuHd_095 : 21.417 14.777 7.008 4.754 MuHd_100 : 15.968 14.284 6.540 3.395 MuHd_105 : 7.721 10.917 4.336 1.712 Hmax_075 : 13.100 14.100 2.513 4.530 Hmax_095 : 18.813 19.100 3.498 7.210 Hmax_100 : 18.300 18.700 3.219 6.440 Hmax_105 : 16.700 17.733 1.990 5.833 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9692 0.0308 DFMC : 0.9676 0.0324
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 622 LmxM.36.1380 MWLSEWFSALFILIGHDAHVQVTACLFPCALAHAPFPKASSRIWTDRDTPHWLDGRADVCARTKTRASKLVPMTSTLTNS 80 NRINIPAVCRLRERNTSKTVGSGVLVAPGLLLTSATAIPTQSRATHVVATFFEGTKKNAVDVPLQPQRYYFASRYPPEMD 160 YCLISCEEAPLFNVTPVHMALTAKGWAPVEEGDVVLIVEHPIGGVFGTAAAPLNGKATSPSTLSETGESNFDSVQAPYVE 240 QKRFEEVLRCRGNVSFLKSNGSWRTAGCPAFNEHGHLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLPHLPQEDIT 320 FEDVWDTWYVTNDITRIIAILANFKGKSMAQQVTWRLCELTAKPQLVKSIASNGGIEVILQNLSLFCSDEKLSEIGLRAL 400 WNVSIGEEAHLAAIIKREGVHTILNVVESFPANETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGFQQFRESVV 480 LQKFALSFFATLARLNEEFACNLVQQDVIDHIIHLIEEKPKQIFLMEIVVGFVAELAQYPQTVELMCGKAPQYAAASMTY 560 LIDLLIHIILEYKDLDSLLVSGNRALWGLGIVPTCRGIILENPRGIDALRISLPALIASTHR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.1380 38 AHAPFPK|AS 0.083 . LmxM.36.1380 42 FPKASSR|IW 0.102 . LmxM.36.1380 47 SRIWTDR|DT 0.170 . LmxM.36.1380 56 PHWLDGR|AD 0.071 . LmxM.36.1380 62 RADVCAR|TK 0.081 . LmxM.36.1380 64 DVCARTK|TR 0.057 . LmxM.36.1380 66 CARTKTR|AS 0.112 . LmxM.36.1380 69 TKTRASK|LV 0.130 . LmxM.36.1380 82 TLTNSNR|IN 0.101 . LmxM.36.1380 90 NIPAVCR|LR 0.071 . LmxM.36.1380 92 PAVCRLR|ER 0.073 . LmxM.36.1380 94 VCRLRER|NT 0.103 . LmxM.36.1380 98 RERNTSK|TV 0.100 . LmxM.36.1380 123 AIPTQSR|AT 0.098 . LmxM.36.1380 136 TFFEGTK|KN 0.057 . LmxM.36.1380 137 FFEGTKK|NA 0.109 . LmxM.36.1380 148 VPLQPQR|YY 0.098 . LmxM.36.1380 154 RYYFASR|YP 0.085 . LmxM.36.1380 184 HMALTAK|GW 0.096 . LmxM.36.1380 216 AAPLNGK|AT 0.069 . LmxM.36.1380 242 APYVEQK|RF 0.079 . LmxM.36.1380 243 PYVEQKR|FE 0.147 . LmxM.36.1380 249 RFEEVLR|CR 0.089 . LmxM.36.1380 251 EEVLRCR|GN 0.080 . LmxM.36.1380 258 GNVSFLK|SN 0.091 . LmxM.36.1380 264 KSNGSWR|TA 0.146 . LmxM.36.1380 285 GLQSQSR|AD 0.113 . LmxM.36.1380 294 GEGVVNR|IL 0.099 . LmxM.36.1380 303 SLISIVK|HL 0.066 . LmxM.36.1380 336 VTNDITR|II 0.084 . LmxM.36.1380 345 AILANFK|GK 0.064 . LmxM.36.1380 347 LANFKGK|SM 0.123 . LmxM.36.1380 356 AQQVTWR|LC 0.077 . LmxM.36.1380 363 LCELTAK|PQ 0.058 . LmxM.36.1380 368 AKPQLVK|SI 0.079 . LmxM.36.1380 391 LFCSDEK|LS 0.064 . LmxM.36.1380 398 LSEIGLR|AL 0.094 . LmxM.36.1380 416 HLAAIIK|RE 0.064 . LmxM.36.1380 417 LAAIIKR|EG 0.146 . LmxM.36.1380 451 HNIAGCR|AA 0.082 . LmxM.36.1380 463 SEAHGAR|AL 0.134 . LmxM.36.1380 466 HGARALK|AL 0.210 . LmxM.36.1380 476 PGFQQFR|ES 0.075 . LmxM.36.1380 483 ESVVLQK|FA 0.071 . LmxM.36.1380 494 FFATLAR|LN 0.080 . LmxM.36.1380 519 IHLIEEK|PK 0.061 . LmxM.36.1380 521 LIEEKPK|QI 0.077 . LmxM.36.1380 549 VELMCGK|AP 0.058 . LmxM.36.1380 573 HIILEYK|DL 0.072 . LmxM.36.1380 584 LLVSGNR|AL 0.078 . LmxM.36.1380 596 GIVPTCR|GI 0.091 . LmxM.36.1380 604 IILENPR|GI 0.103 . LmxM.36.1380 610 RGIDALR|IS 0.087 . LmxM.36.1380 622 LIASTHR|-- 0.094 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.1380 ATGTGGCTTTCTGAATGGTTCTCTGCGCTTTTCATCCTTATTGGGCATGATGCACATGTG CAAGTGACCGCCTGTCTTTTCCCCTGCGCCCTGGCACACGCCCCGTTTCCGAAGGCCTCA AGCCGGATCTGGACTGACAGGGACACACCTCACTGGCTAGACGGACGCGCAGACGTTTGT GCACGCACCAAGACAAGGGCGAGCAAACTGGTACCAATGACGTCGACTCTGACGAACAGC AACCGGATCAATATCCCTGCGGTATGCCGGCTTCGTGAGCGGAACACGAGCAAGACTGTG GGCTCAGGTGTACTGGTGGCACCAGGGCTGCTGCTGACGTCTGCCACTGCTATCCCTACC CAGTCGCGTGCCACGCACGTTGTGGCCACGTTCTTTGAGGGCACCAAGAAAAACGCCGTG GATGTGCCACTGCAACCGCAGCGCTACTACTTCGCCTCCCGCTATCCGCCAGAAATGGAC TACTGCCTGATCAGCTGCGAGGAGGCGCCGCTGTTCAACGTGACACCGGTGCACATGGCA CTCACTGCGAAAGGTTGGGCACCTGTGGAGGAAGGCGATGTGGTGCTAATCGTAGAGCAC CCAATCGGAGGCGTGTTCGGCACCGCAGCAGCTCCATTGAACGGAAAAGCCACCTCCCCG TCCACGCTATCCGAGACCGGGGAGAGCAACTTTGATTCCGTGCAGGCGCCGTACGTGGAG CAGAAGCGCTTCGAGGAAGTGCTGCGCTGCCGCGGCAATGTGAGCTTCCTCAAGTCCAAC GGCAGCTGGAGGACGGCTGGCTGTCCTGCTTTCAACGAGCATGGCCACCTGGTCGGTCTG CAATCGCAGAGCAGGGCAGATGGCGAGGGAGTCGTGAACCGCATCCTGTCGCTGATCTCC ATCGTGAAGCACCTCTTTGCCAACGTGCAGCTGCCGCATCTTCCGCAGGAAGACATCACG TTCGAGGATGTGTGGGACACGTGGTACGTGACGAACGACATCACCCGCATCATCGCCATC CTCGCCAACTTCAAAGGCAAGTCTATGGCCCAGCAGGTGACATGGCGCCTGTGCGAGCTG ACGGCAAAGCCGCAGCTGGTCAAGAGTATCGCCTCGAATGGCGGCATCGAGGTTATTCTG CAGAACCTTAGCCTCTTCTGCAGCGACGAGAAGTTGTCGGAGATTGGCCTACGCGCTCTC TGGAATGTTAGCATTGGCGAAGAGGCGCATCTAGCCGCCATTATCAAAAGGGAAGGCGTG CACACCATCCTCAACGTTGTGGAGTCATTTCCGGCGAACGAGACGGTGCTCGAGTTTGGG GCGGTGCTGCTGCACAACATCGCCGGTTGTCGTGCGGCGCCAAACTTCTCCGAGGCACAC GGCGCGCGAGCGCTGAAGGCGCTGTACCCTGGCTTTCAGCAGTTCCGTGAGAGCGTCGTG CTGCAGAAGTTTGCGCTCAGCTTCTTCGCAACCCTTGCGCGACTGAACGAGGAGTTTGCA TGCAATTTGGTGCAACAAGACGTCATCGATCACATTATCCATCTCATCGAAGAGAAGCCG AAGCAGATTTTTCTCATGGAAATCGTCGTCGGGTTTGTGGCAGAGCTGGCGCAGTACCCG CAAACGGTTGAGCTGATGTGTGGTAAAGCTCCGCAGTACGCTGCCGCCAGCATGACGTAT CTGATCGACCTCCTCATTCATATCATCTTGGAATACAAGGACCTTGACAGCCTTTTGGTG AGCGGCAATCGGGCGCTGTGGGGACTTGGCATTGTGCCCACCTGCCGCGGCATCATTTTG GAGAACCCACGGGGCATCGACGCACTGCGCATCTCACTGCCAGCACTCATAGCAAGCACA CACCGCTAG
  • Download Fasta

  • Fasta :-

    MWLSEWFSALFILIGHDAHVQVTACLFPCALAHAPFPKASSRIWTDRDTPHWLDGRADVC ARTKTRASKLVPMTSTLTNSNRINIPAVCRLRERNTSKTVGSGVLVAPGLLLTSATAIPT QSRATHVVATFFEGTKKNAVDVPLQPQRYYFASRYPPEMDYCLISCEEAPLFNVTPVHMA LTAKGWAPVEEGDVVLIVEHPIGGVFGTAAAPLNGKATSPSTLSETGESNFDSVQAPYVE QKRFEEVLRCRGNVSFLKSNGSWRTAGCPAFNEHGHLVGLQSQSRADGEGVVNRILSLIS IVKHLFANVQLPHLPQEDITFEDVWDTWYVTNDITRIIAILANFKGKSMAQQVTWRLCEL TAKPQLVKSIASNGGIEVILQNLSLFCSDEKLSEIGLRALWNVSIGEEAHLAAIIKREGV HTILNVVESFPANETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGFQQFRESVV LQKFALSFFATLARLNEEFACNLVQQDVIDHIIHLIEEKPKQIFLMEIVVGFVAELAQYP QTVELMCGKAPQYAAASMTYLIDLLIHIILEYKDLDSLLVSGNRALWGLGIVPTCRGIIL ENPRGIDALRISLPALIASTHR

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmxM.36.138097 SERNTSKTVG0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India