LmxM.36.2420 | serine peptidase, Clan SC, Family S9B

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.2420OTHER0.9994400.0001220.000438
No Results

  • Fasta :-

    >LmxM.36.2420 MLPTTLKSCMDELSRYMDVFTSAAGKPQHLTIVGDCVYWTQGKQQMLYSAPVGLEVAEAF RVIAADEQEAGDEKQLTKEEEMLRERTRSQTTGIKKFHVRCSDGAIFYTSGVEVYVYYQN GPRAGKTPLKLFDYMSEKDKAHFKAMGSKPNLFVQAIKSFDESHPSTHTVMTFANNNNVY KATLTENPESEEIPLAVTVEQITHIGDDLHQCGVADYIIQEEFSRYTGHYATDRYIVFSY IDSSNMRSVALLSSVGSPEVPAAEPMCPTYATEVEEMPYSRVGDPNARTTLVVYDTATKQ LRLLPDVAIRRVAPWAEYILRFGFKDAETLYLSVVSRAQEDYAVMCCPIAALPTIAKEEE LRSLYTEKDGQVAANIIGDAAAPELHVEWKQHIDFAWVECPPGVPVHYGKVYDVLCCHAA ETETAHYHLYARPAGDRNPEAWKPLTAGAWNVCAGTQHVCEDRVYFLANAEGRLKRILYS VPLSLESAPRTADALTRLTPLDEHVYSYCVKGDHLYYVSSTAAAPARLYVSCVSAPQKRA EVTVPSLIATTPGADPATKTDPAHYFGGLPVVTPKIVTVTSRRRVPLSVAVFVSPSAPKD APGPLVLFIYGGPHVQLVFENDYETRCKAPVQVLLQHGISVALVDNQMSNANGLRDLSIC KKNFGNFETDDYVDVTQYLCNTPASEIGFPASLRFDAKRVAICGWSYGGYATLLAMCQAA DVFRIGFAGAPVGDWKLYDTGYTERYMGTLYEADRNAESGASRNRNETYMTSTISHYAGG FPEECNRLYIAHGLLDENVHFGHSCHVVKALIDNAKPYSMLLYPGERHGLRQNRQSRLHH DALLVKTLEEQL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/720 Sequence name : 720 Sequence length : 852 VALUES OF COMPUTED PARAMETERS Coef20 : 4.111 CoefTot : -0.010 ChDiff : -22 ZoneTo : 10 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.276 0.317 0.652 MesoH : -0.100 0.457 -0.220 0.265 MuHd_075 : 14.422 3.249 5.892 0.839 MuHd_095 : 47.465 29.152 12.437 9.224 MuHd_100 : 43.524 27.564 11.925 9.018 MuHd_105 : 34.722 21.445 9.658 7.374 Hmax_075 : 0.600 1.867 -0.185 1.020 Hmax_095 : 19.075 16.537 3.500 4.777 Hmax_100 : 17.000 16.400 3.561 5.130 Hmax_105 : 13.500 12.900 3.311 4.632 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3614 0.6386 DFMC : 0.4897 0.5103 This protein is probably imported in chloroplast. f(Ser) = 0.1000 f(Arg) = 0.0000 CMi = 1.42857 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 852 LmxM.36.2420 MLPTTLKSCMDELSRYMDVFTSAAGKPQHLTIVGDCVYWTQGKQQMLYSAPVGLEVAEAFRVIAADEQEAGDEKQLTKEE 80 EMLRERTRSQTTGIKKFHVRCSDGAIFYTSGVEVYVYYQNGPRAGKTPLKLFDYMSEKDKAHFKAMGSKPNLFVQAIKSF 160 DESHPSTHTVMTFANNNNVYKATLTENPESEEIPLAVTVEQITHIGDDLHQCGVADYIIQEEFSRYTGHYATDRYIVFSY 240 IDSSNMRSVALLSSVGSPEVPAAEPMCPTYATEVEEMPYSRVGDPNARTTLVVYDTATKQLRLLPDVAIRRVAPWAEYIL 320 RFGFKDAETLYLSVVSRAQEDYAVMCCPIAALPTIAKEEELRSLYTEKDGQVAANIIGDAAAPELHVEWKQHIDFAWVEC 400 PPGVPVHYGKVYDVLCCHAAETETAHYHLYARPAGDRNPEAWKPLTAGAWNVCAGTQHVCEDRVYFLANAEGRLKRILYS 480 VPLSLESAPRTADALTRLTPLDEHVYSYCVKGDHLYYVSSTAAAPARLYVSCVSAPQKRAEVTVPSLIATTPGADPATKT 560 DPAHYFGGLPVVTPKIVTVTSRRRVPLSVAVFVSPSAPKDAPGPLVLFIYGGPHVQLVFENDYETRCKAPVQVLLQHGIS 640 VALVDNQMSNANGLRDLSICKKNFGNFETDDYVDVTQYLCNTPASEIGFPASLRFDAKRVAICGWSYGGYATLLAMCQAA 720 DVFRIGFAGAPVGDWKLYDTGYTERYMGTLYEADRNAESGASRNRNETYMTSTISHYAGGFPEECNRLYIAHGLLDENVH 800 FGHSCHVVKALIDNAKPYSMLLYPGERHGLRQNRQSRLHHDALLVKTLEEQL 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...........................................................................P.... 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.2420 7 MLPTTLK|SC 0.077 . LmxM.36.2420 15 CMDELSR|YM 0.073 . LmxM.36.2420 26 FTSAAGK|PQ 0.062 . LmxM.36.2420 43 VYWTQGK|QQ 0.053 . LmxM.36.2420 61 EVAEAFR|VI 0.082 . LmxM.36.2420 74 QEAGDEK|QL 0.073 . LmxM.36.2420 78 DEKQLTK|EE 0.059 . LmxM.36.2420 84 KEEEMLR|ER 0.077 . LmxM.36.2420 86 EEMLRER|TR 0.075 . LmxM.36.2420 88 MLRERTR|SQ 0.200 . LmxM.36.2420 95 SQTTGIK|KF 0.055 . LmxM.36.2420 96 QTTGIKK|FH 0.077 . LmxM.36.2420 100 IKKFHVR|CS 0.159 . LmxM.36.2420 123 YYQNGPR|AG 0.073 . LmxM.36.2420 126 NGPRAGK|TP 0.095 . LmxM.36.2420 130 AGKTPLK|LF 0.057 . LmxM.36.2420 138 FDYMSEK|DK 0.067 . LmxM.36.2420 140 YMSEKDK|AH 0.081 . LmxM.36.2420 144 KDKAHFK|AM 0.083 . LmxM.36.2420 149 FKAMGSK|PN 0.064 . LmxM.36.2420 158 LFVQAIK|SF 0.088 . LmxM.36.2420 181 NNNNVYK|AT 0.081 . LmxM.36.2420 225 IQEEFSR|YT 0.114 . LmxM.36.2420 234 GHYATDR|YI 0.089 . LmxM.36.2420 247 IDSSNMR|SV 0.153 . LmxM.36.2420 281 EEMPYSR|VG 0.086 . LmxM.36.2420 288 VGDPNAR|TT 0.082 . LmxM.36.2420 299 VYDTATK|QL 0.054 . LmxM.36.2420 302 TATKQLR|LL 0.084 . LmxM.36.2420 310 LPDVAIR|RV 0.100 . LmxM.36.2420 311 PDVAIRR|VA 0.132 . LmxM.36.2420 321 WAEYILR|FG 0.090 . LmxM.36.2420 325 ILRFGFK|DA 0.099 . LmxM.36.2420 337 YLSVVSR|AQ 0.144 . LmxM.36.2420 357 ALPTIAK|EE 0.053 . LmxM.36.2420 362 AKEEELR|SL 0.132 . LmxM.36.2420 368 RSLYTEK|DG 0.071 . LmxM.36.2420 390 ELHVEWK|QH 0.071 . LmxM.36.2420 410 VPVHYGK|VY 0.066 . LmxM.36.2420 432 HYHLYAR|PA 0.138 . LmxM.36.2420 437 ARPAGDR|NP 0.084 . LmxM.36.2420 443 RNPEAWK|PL 0.069 . LmxM.36.2420 463 QHVCEDR|VY 0.075 . LmxM.36.2420 473 LANAEGR|LK 0.085 . LmxM.36.2420 475 NAEGRLK|RI 0.056 . LmxM.36.2420 476 AEGRLKR|IL 0.527 *ProP* LmxM.36.2420 490 SLESAPR|TA 0.111 . LmxM.36.2420 497 TADALTR|LT 0.091 . LmxM.36.2420 511 VYSYCVK|GD 0.068 . LmxM.36.2420 527 TAAAPAR|LY 0.103 . LmxM.36.2420 538 CVSAPQK|RA 0.080 . LmxM.36.2420 539 VSAPQKR|AE 0.193 . LmxM.36.2420 559 GADPATK|TD 0.061 . LmxM.36.2420 575 LPVVTPK|IV 0.077 . LmxM.36.2420 582 IVTVTSR|RR 0.068 . LmxM.36.2420 583 VTVTSRR|RV 0.124 . LmxM.36.2420 584 TVTSRRR|VP 0.081 . LmxM.36.2420 599 VSPSAPK|DA 0.071 . LmxM.36.2420 626 ENDYETR|CK 0.090 . LmxM.36.2420 628 DYETRCK|AP 0.066 . LmxM.36.2420 655 SNANGLR|DL 0.131 . LmxM.36.2420 661 RDLSICK|KN 0.060 . LmxM.36.2420 662 DLSICKK|NF 0.123 . LmxM.36.2420 694 GFPASLR|FD 0.080 . LmxM.36.2420 698 SLRFDAK|RV 0.093 . LmxM.36.2420 699 LRFDAKR|VA 0.245 . LmxM.36.2420 724 QAADVFR|IG 0.112 . LmxM.36.2420 736 APVGDWK|LY 0.071 . LmxM.36.2420 745 DTGYTER|YM 0.097 . LmxM.36.2420 755 TLYEADR|NA 0.100 . LmxM.36.2420 763 AESGASR|NR 0.094 . LmxM.36.2420 765 SGASRNR|NE 0.089 . LmxM.36.2420 787 FPEECNR|LY 0.077 . LmxM.36.2420 809 HSCHVVK|AL 0.074 . LmxM.36.2420 816 ALIDNAK|PY 0.070 . LmxM.36.2420 827 LLYPGER|HG 0.075 . LmxM.36.2420 831 GERHGLR|QN 0.105 . LmxM.36.2420 834 HGLRQNR|QS 0.208 . LmxM.36.2420 837 RQNRQSR|LH 0.324 . LmxM.36.2420 846 HDALLVK|TL 0.072 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.2420 ATGTTGCCAACGACGCTGAAAAGCTGCATGGACGAGCTCTCTCGGTACATGGACGTCTTC ACGTCTGCAGCGGGCAAACCGCAACACCTCACGATTGTTGGTGATTGTGTCTACTGGACG CAGGGCAAGCAGCAGATGCTGTACTCGGCGCCGGTCGGCTTGGAAGTCGCCGAGGCCTTC CGTGTCATTGCCGCAGACGAGCAGGAAGCCGGGGACGAGAAGCAGCTCACCAAGGAGGAG GAGATGCTGCGCGAGCGGACGCGCAGCCAGACGACCGGCATCAAAAAGTTTCACGTTCGC TGCAGCGACGGCGCCATCTTCTACACGAGCGGCGTCGAAGTGTATGTCTACTACCAGAAT GGGCCGCGTGCCGGCAAGACACCTCTGAAGCTGTTCGACTACATGTCTGAGAAGGACAAG GCTCACTTCAAGGCGATGGGCAGCAAGCCAAACCTCTTTGTGCAGGCCATCAAATCCTTT GATGAGTCGCACCCGAGCACCCACACCGTCATGACGTTTGCCAATAACAACAATGTGTAC AAGGCAACCCTGACGGAGAACCCCGAAAGCGAGGAGATACCGCTGGCCGTCACCGTTGAG CAGATCACGCACATCGGGGACGACTTGCACCAGTGCGGCGTGGCCGATTACATCATCCAG GAAGAGTTCTCGCGGTACACTGGGCACTACGCGACGGACCGGTACATTGTCTTCTCCTAC ATCGACTCCTCCAACATGCGCTCTGTGGCCCTGCTCAGCAGTGTGGGGTCTCCTGAGGTG CCGGCGGCGGAGCCGATGTGCCCGACCTACGCGACAGAGGTGGAGGAGATGCCGTACTCC CGTGTCGGTGACCCGAACGCGCGCACGACACTTGTCGTGTACGACACCGCCACGAAGCAG CTGCGTCTGCTCCCCGACGTCGCCATTCGAAGGGTGGCACCGTGGGCAGAGTACATTCTT CGCTTCGGCTTCAAAGATGCAGAAACCCTCTATCTTTCGGTCGTGAGTCGCGCACAGGAG GACTACGCGGTGATGTGCTGCCCCATCGCGGCGCTACCCACCATCGCCAAAGAGGAAGAG CTGCGGTCCCTCTACACTGAAAAGGACGGCCAAGTCGCTGCGAACATTATTGGCGATGCC GCCGCGCCGGAGTTGCACGTGGAGTGGAAGCAACACATTGACTTTGCGTGGGTGGAGTGC CCGCCCGGGGTGCCGGTGCACTACGGCAAGGTGTACGACGTGCTTTGCTGCCACGCAGCA GAGACGGAGACGGCGCATTACCACCTCTACGCCCGTCCCGCCGGCGACCGCAATCCAGAG GCATGGAAGCCGCTGACGGCGGGAGCGTGGAACGTGTGTGCAGGCACGCAGCATGTGTGT GAGGACCGCGTGTACTTCCTGGCGAACGCCGAAGGGCGCCTGAAGCGCATTCTGTACTCC GTGCCGCTGTCGCTGGAGAGTGCGCCGCGCACGGCCGACGCACTGACGCGCCTCACTCCG CTGGACGAACACGTCTACAGCTACTGTGTCAAGGGTGACCATCTCTACTACGTCTCCAGC ACCGCCGCTGCACCGGCGAGGCTCTATGTGAGCTGCGTATCAGCACCGCAGAAGAGAGCG GAGGTCACCGTTCCGTCATTGATCGCTACAACGCCAGGAGCCGACCCAGCCACAAAAACA GATCCAGCCCACTACTTTGGAGGTCTGCCGGTTGTGACTCCGAAGATTGTGACCGTGACG AGTCGTCGCAGGGTACCACTGAGCGTAGCGGTGTTCGTCTCGCCAAGCGCGCCAAAGGAT GCACCAGGGCCACTAGTCCTGTTCATCTACGGCGGACCACATGTGCAGCTTGTGTTTGAG AACGACTACGAGACCCGCTGCAAGGCCCCGGTGCAGGTATTGCTGCAGCACGGCATCTCT GTTGCCTTAGTGGACAACCAAATGAGCAACGCCAACGGGCTGCGTGACTTGAGCATCTGC AAGAAGAACTTTGGCAACTTCGAGACAGACGACTACGTCGATGTGACGCAGTACCTCTGC AACACGCCGGCGTCCGAGATCGGTTTCCCCGCCAGCCTCCGTTTTGACGCAAAGCGTGTG GCGATCTGTGGCTGGTCCTACGGTGGCTATGCAACCCTCCTCGCCATGTGCCAGGCGGCG GATGTCTTTCGGATCGGCTTCGCCGGTGCGCCCGTTGGCGACTGGAAACTGTACGACACA GGCTACACAGAGCGCTACATGGGGACCCTTTACGAGGCGGACCGCAACGCTGAAAGCGGT GCATCACGAAACAGGAACGAGACCTACATGACGTCCACCATTAGCCACTACGCCGGCGGC TTTCCCGAGGAGTGCAACCGCCTCTACATCGCACACGGCCTCCTCGACGAGAACGTGCAC TTTGGCCACAGCTGCCACGTTGTGAAGGCATTGATCGACAACGCCAAGCCGTATAGCATG CTGCTGTACCCAGGAGAGCGCCACGGCCTGCGCCAGAACCGCCAATCACGCCTGCACCAC GACGCACTTCTTGTCAAGACCCTAGAAGAGCAGCTCTAG
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  • Fasta :-

    MLPTTLKSCMDELSRYMDVFTSAAGKPQHLTIVGDCVYWTQGKQQMLYSAPVGLEVAEAF RVIAADEQEAGDEKQLTKEEEMLRERTRSQTTGIKKFHVRCSDGAIFYTSGVEVYVYYQN GPRAGKTPLKLFDYMSEKDKAHFKAMGSKPNLFVQAIKSFDESHPSTHTVMTFANNNNVY KATLTENPESEEIPLAVTVEQITHIGDDLHQCGVADYIIQEEFSRYTGHYATDRYIVFSY IDSSNMRSVALLSSVGSPEVPAAEPMCPTYATEVEEMPYSRVGDPNARTTLVVYDTATKQ LRLLPDVAIRRVAPWAEYILRFGFKDAETLYLSVVSRAQEDYAVMCCPIAALPTIAKEEE LRSLYTEKDGQVAANIIGDAAAPELHVEWKQHIDFAWVECPPGVPVHYGKVYDVLCCHAA ETETAHYHLYARPAGDRNPEAWKPLTAGAWNVCAGTQHVCEDRVYFLANAEGRLKRILYS VPLSLESAPRTADALTRLTPLDEHVYSYCVKGDHLYYVSSTAAAPARLYVSCVSAPQKRA EVTVPSLIATTPGADPATKTDPAHYFGGLPVVTPKIVTVTSRRRVPLSVAVFVSPSAPKD APGPLVLFIYGGPHVQLVFENDYETRCKAPVQVLLQHGISVALVDNQMSNANGLRDLSIC KKNFGNFETDDYVDVTQYLCNTPASEIGFPASLRFDAKRVAICGWSYGGYATLLAMCQAA DVFRIGFAGAPVGDWKLYDTGYTERYMGTLYEADRNAESGASRNRNETYMTSTISHYAGG FPEECNRLYIAHGLLDENVHFGHSCHVVKALIDNAKPYSMLLYPGERHGLRQNRQSRLHH DALLVKTLEEQL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.2420672 YETDDYVDVT0.993unspLmxM.36.2420672 YETDDYVDVT0.993unspLmxM.36.2420672 YETDDYVDVT0.993unspLmxM.36.2420136 SFDYMSEKDK0.992unspLmxM.36.2420239 SYIVFSYIDS0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India