LmxM.36.2710 | mitochondrial ATP-dependent zinc metallopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.2710OTHER0.9901850.0096050.000210
No Results

  • Fasta :-

    >LmxM.36.2710 MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDR FQEGQPTNKSGFARSGISGLFGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKD PEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRV RELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVAQVYLDKIKTDSTVNAMDIARGTTGF TGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGG HALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDKYSQSKRQCLARLKVCVAGRV GEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEALPERP PRLSQASESKAAPPRGGNSDQANGRRTVPIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/665 Sequence name : 665 Sequence length : 571 VALUES OF COMPUTED PARAMETERS Coef20 : 2.723 CoefTot : -1.440 ChDiff : -10 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.547 2.359 0.452 0.852 MesoH : -0.391 0.395 -0.337 0.230 MuHd_075 : 26.534 16.650 7.072 5.404 MuHd_095 : 16.029 10.317 3.731 3.122 MuHd_100 : 13.519 8.567 2.610 1.804 MuHd_105 : 9.862 5.206 3.075 0.239 Hmax_075 : 5.250 3.267 -1.556 2.602 Hmax_095 : 6.700 3.600 -0.563 3.070 Hmax_100 : 1.600 0.500 -2.537 1.740 Hmax_105 : 1.983 -4.638 -1.552 0.875 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9869 0.0131 DFMC : 0.9815 0.0185
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 571 LmxM.36.2710 MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDRFQEGQPTNKSGFARSGISGL 80 FGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKDPEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSF 160 FYATGSEFDEMFVGVGARRVRELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA 240 TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVAQVYLDKIKTDSTVNAMDIARGTTGFTGAELSNLVNLAAIRAAVLN 320 KAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGGHALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDK 400 YSQSKRQCLARLKVCVAGRVGEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK 480 LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEALPERPPRLSQASESKAAPPRGGNSD 560 QANGRRTVPIS 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.2710 18 PSDLGTK|ER 0.057 . LmxM.36.2710 20 DLGTKER|PI 0.089 . LmxM.36.2710 30 VVSAPQK|AS 0.078 . LmxM.36.2710 36 KASWATR|FW 0.173 . LmxM.36.2710 60 VEEFNDR|FQ 0.094 . LmxM.36.2710 69 EGQPTNK|SG 0.070 . LmxM.36.2710 74 NKSGFAR|SG 0.307 . LmxM.36.2710 87 FGSVDVK|PV 0.070 . LmxM.36.2710 102 VTFDSIR|GC 0.086 . LmxM.36.2710 108 RGCDEAK|KE 0.062 . LmxM.36.2710 109 GCDEAKK|EL 0.103 . LmxM.36.2710 119 EIVEFLK|DP 0.062 . LmxM.36.2710 123 FLKDPEK|FY 0.065 . LmxM.36.2710 130 FYNLGGR|LP 0.090 . LmxM.36.2710 133 LGGRLPK|GA 0.127 . LmxM.36.2710 145 GPPGCGK|TM 0.057 . LmxM.36.2710 150 GKTMLAK|AI 0.073 . LmxM.36.2710 154 LAKAIAK|EA 0.088 . LmxM.36.2710 178 FVGVGAR|RV 0.127 . LmxM.36.2710 179 VGVGARR|VR 0.081 . LmxM.36.2710 181 VGARRVR|EL 0.277 . LmxM.36.2710 188 ELFAAAK|AN 0.075 . LmxM.36.2710 206 VDALGGR|RS 0.068 . LmxM.36.2710 207 DALGGRR|SR 0.142 . LmxM.36.2710 209 LGGRRSR|SD 0.354 . LmxM.36.2710 216 SDHSTSR|MT 0.106 . LmxM.36.2710 249 TPETLDK|AL 0.068 . LmxM.36.2710 253 LDKALTR|PG 0.077 . LmxM.36.2710 256 ALTRPGR|LD 0.203 . LmxM.36.2710 269 VDPPDMK|GR 0.058 . LmxM.36.2710 271 PPDMKGR|AE 0.102 . LmxM.36.2710 281 AQVYLDK|IK 0.065 . LmxM.36.2710 283 VYLDKIK|TD 0.066 . LmxM.36.2710 295 NAMDIAR|GT 0.116 . LmxM.36.2710 315 VNLAAIR|AA 0.072 . LmxM.36.2710 321 RAAVLNK|AK 0.076 . LmxM.36.2710 323 AVLNKAK|VT 0.070 . LmxM.36.2710 333 EEIEYAK|DR 0.063 . LmxM.36.2710 335 IEYAKDR|VM 0.103 . LmxM.36.2710 343 MMGAESK|KI 0.068 . LmxM.36.2710 344 MGAESKK|IV 0.179 . LmxM.36.2710 351 IVPEEER|RV 0.089 . LmxM.36.2710 352 VPEEERR|VT 0.117 . LmxM.36.2710 369 LSAILLK|DE 0.081 . LmxM.36.2710 378 GADPVHK|AT 0.064 . LmxM.36.2710 384 KATIVPR|GN 0.132 . LmxM.36.2710 398 VQQQPDR|DK 0.093 . LmxM.36.2710 400 QQPDRDK|YS 0.065 . LmxM.36.2710 405 DKYSQSK|RQ 0.058 . LmxM.36.2710 406 KYSQSKR|QC 0.221 . LmxM.36.2710 411 KRQCLAR|LK 0.105 . LmxM.36.2710 413 QCLARLK|VC 0.058 . LmxM.36.2710 419 KVCVAGR|VG 0.094 . LmxM.36.2710 447 QATNMAR|HM 0.088 . LmxM.36.2710 451 MARHMVR|QF 0.138 . LmxM.36.2710 480 YISDETK|LK 0.068 . LmxM.36.2710 482 SDETKLK|IE 0.061 . LmxM.36.2710 485 TKLKIEK|EV 0.079 . LmxM.36.2710 489 IEKEVHR|LV 0.141 . LmxM.36.2710 499 QAYIETK|EL 0.059 . LmxM.36.2710 506 ELLLSHR|AE 0.073 . LmxM.36.2710 518 IANNLLK|YE 0.072 . LmxM.36.2710 525 YETLSGK|DL 0.090 . LmxM.36.2710 529 SGKDLEK|II 0.060 . LmxM.36.2710 532 DLEKIIK|GE 0.057 . LmxM.36.2710 539 GEALPER|PP 0.092 . LmxM.36.2710 542 LPERPPR|LS 0.356 . LmxM.36.2710 550 SQASESK|AA 0.076 . LmxM.36.2710 555 SKAAPPR|GG 0.103 . LmxM.36.2710 565 SDQANGR|RT 0.086 . LmxM.36.2710 566 DQANGRR|TV 0.190 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.2710 ATGTCGTATGGGCAGCCACAACAGCAACCGCTCCCAAGCGATCTGGGCACGAAGGAAAGA CCGATTGTGGTCGTGTCAGCCCCGCAGAAGGCTTCCTGGGCCACCCGCTTCTGGATGTTC TTGCTCTTCGGGATTGCTCTTAGCTGCTTCATCAGCCTGGTCGAGGAGTTCAACGATCGC TTTCAGGAGGGCCAGCCTACAAACAAGTCAGGATTTGCGCGCTCTGGCATATCTGGCCTG TTCGGCTCTGTCGACGTGAAGCCGGTGAATCTGGACAACTTGGAGGTCACCTTTGATAGC ATCCGCGGATGCGATGAGGCGAAAAAAGAGCTGGAGGAGATTGTTGAGTTTCTAAAGGAC CCCGAGAAGTTCTACAATTTGGGTGGGCGGCTGCCAAAAGGAGCGCTGCTCACCGGTCCG CCAGGGTGCGGGAAAACCATGCTAGCAAAGGCGATTGCCAAGGAGGCTGGCGTGAGCTTT TTCTACGCCACCGGAAGCGAGTTCGATGAGATGTTTGTTGGCGTTGGCGCCCGCCGCGTT CGCGAACTTTTCGCGGCCGCAAAGGCCAACTCACCAGCTCTGATTTTCATCGACGAGGTG GACGCATTAGGCGGTCGCCGCTCTCGTTCCGACCATAGCACCTCTCGCATGACGTTGAAC CAGCTCTTGGCAGAGATGGACGGCTTCGACTCCGACGAGGCTGTTATTGTCCTCGCCGCC ACGAACACCCCTGAAACGTTGGACAAGGCACTCACTCGCCCCGGTCGTCTGGACACCACC ATCACCGTTGACCCTCCGGATATGAAAGGGCGCGCGGAGGTGGCTCAGGTGTACCTTGAC AAAATCAAGACAGACAGCACGGTCAATGCAATGGATATTGCACGCGGAACAACTGGCTTC ACTGGTGCCGAGCTTAGCAATTTGGTGAATTTGGCAGCCATCAGGGCCGCGGTGCTGAAC AAGGCGAAGGTGACCAGCGAAGAGATAGAGTACGCCAAGGACCGCGTCATGATGGGTGCC GAGAGCAAGAAGATTGTGCCGGAGGAGGAGCGTCGCGTGACTGCGTTCCACGAGGGCGGC CACGCTTTGAGTGCTATCTTGCTGAAGGACGAGGGTGCCGATCCTGTCCACAAGGCAACC ATTGTTCCCCGCGGCAACGGCATTATGGGACTCGTCCAGCAGCAGCCGGACAGGGATAAG TACAGTCAAAGCAAGCGCCAGTGCCTGGCTCGCCTGAAGGTGTGTGTGGCGGGACGAGTC GGCGAAGAGATTCTTTTGGGCCCTGACGATATCACGACCGGCGCAGGCTCGGATTTTCAG CAGGCCACAAACATGGCCCGCCACATGGTGCGACAGTTCGGGTTCAGCGACGCCATGGGC TTCGTCGACTATGGTACACCCGACACCGCCGAAGGCGCCTACATTTCAGATGAGACGAAG CTCAAAATCGAAAAGGAGGTACATCGCCTTGTGGAGCAGGCCTACATCGAGACCAAAGAG CTTCTTCTAAGCCACCGCGCCGAGCTGGAGAGTATCGCCAACAACCTGCTCAAGTATGAG ACTCTCAGTGGCAAGGATCTTGAGAAGATTATAAAGGGCGAGGCTCTCCCAGAGCGTCCT CCGCGCCTCTCACAGGCTTCGGAAAGCAAGGCTGCGCCGCCACGAGGCGGGAACAGCGAC CAGGCAAACGGTCGGAGAACCGTTCCAATCTCATAG
  • Download Fasta

  • Fasta :-

    MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDR FQEGQPTNKSGFARSGISGLFGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKD PEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRV RELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVAQVYLDKIKTDSTVNAMDIARGTTGF TGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGG HALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDKYSQSKRQCLARLKVCVAGRV GEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEALPERP PRLSQASESKAAPPRGGNSDQANGRRTVPIS

  • title: ATP binding site
  • coordinates: P140,P141,G142,C143,G144,K145,T146,M147,D198,N242
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.2710213 SRSDHSTSRM0.994unspLmxM.36.2710213 SRSDHSTSRM0.994unspLmxM.36.2710213 SRSDHSTSRM0.994unspLmxM.36.2710523 SYETLSGKDL0.998unspLmxM.36.2710208 SGGRRSRSDH0.996unspLmxM.36.2710210 SRRSRSDHST0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India