LmxM.36.3990 | ATP-dependent protease subunit HslV, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.3990mTP0.0193070.0001080.980586CS pos: 30-31. VRK-GN. Pr: 0.2937
No Results

  • Fasta :-

    >LmxM.36.3990 MFRRLATRSTSFVTGAAVQARHTTILSVRKGNKVILIGDRQVTLGERIVAKSSACKLRKL NDNVVIGFAGSTADAFALMEKLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVC SKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALIDVDGYDAERIARKAMRIATD IDVFSNSNWDVEILTREEGAVKKEEAEKAEKAEKAEKAENEAQAKE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/433 Sequence name : 433 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 5.170 CoefTot : 0.437 ChDiff : -1 ZoneTo : 38 KR : 7 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.300 0.054 0.548 MesoH : -1.091 0.239 -0.457 0.115 MuHd_075 : 34.755 12.218 6.648 6.718 MuHd_095 : 35.751 22.959 9.102 8.501 MuHd_100 : 28.844 17.905 9.248 7.099 MuHd_105 : 32.431 17.381 8.480 7.631 Hmax_075 : 15.225 10.400 1.384 4.086 Hmax_095 : 16.600 16.400 0.483 5.660 Hmax_100 : 12.700 16.400 2.638 5.660 Hmax_105 : 11.900 11.800 0.712 4.118 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0121 0.9879 DFMC : 0.0156 0.9844 This protein is probably imported in mitochondria. f(Ser) = 0.0789 f(Arg) = 0.1316 CMi = 0.31056 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 LmxM.36.3990 MFRRLATRSTSFVTGAAVQARHTTILSVRKGNKVILIGDRQVTLGERIVAKSSACKLRKLNDNVVIGFAGSTADAFALME 80 KLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVCSKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALI 160 DVDGYDAERIARKAMRIATDIDVFSNSNWDVEILTREEGAVKKEEAEKAEKAEKAEKAENEAQAKE 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.3990 3 ----MFR|RL 0.080 . LmxM.36.3990 4 ---MFRR|LA 0.193 . LmxM.36.3990 8 FRRLATR|ST 0.189 . LmxM.36.3990 21 GAAVQAR|HT 0.134 . LmxM.36.3990 29 TTILSVR|KG 0.088 . LmxM.36.3990 30 TILSVRK|GN 0.089 . LmxM.36.3990 33 SVRKGNK|VI 0.069 . LmxM.36.3990 40 VILIGDR|QV 0.107 . LmxM.36.3990 47 QVTLGER|IV 0.079 . LmxM.36.3990 51 GERIVAK|SS 0.105 . LmxM.36.3990 56 AKSSACK|LR 0.060 . LmxM.36.3990 58 SSACKLR|KL 0.144 . LmxM.36.3990 59 SACKLRK|LN 0.095 . LmxM.36.3990 81 AFALMEK|LE 0.056 . LmxM.36.3990 85 MEKLENK|LN 0.060 . LmxM.36.3990 95 FPEQLSR|AA 0.085 . LmxM.36.3990 102 AAVELAK|DW 0.071 . LmxM.36.3990 105 ELAKDWR|TD 0.092 . LmxM.36.3990 108 KDWRTDR|AL 0.294 . LmxM.36.3990 111 RTDRALR|RL 0.228 . LmxM.36.3990 112 TDRALRR|LE 0.113 . LmxM.36.3990 122 SLIVCSK|EE 0.062 . LmxM.36.3990 153 SGGTYAK|AA 0.083 . LmxM.36.3990 157 YAKAAAR|AL 0.107 . LmxM.36.3990 169 DGYDAER|IA 0.089 . LmxM.36.3990 172 DAERIAR|KA 0.288 . LmxM.36.3990 173 AERIARK|AM 0.089 . LmxM.36.3990 176 IARKAMR|IA 0.150 . LmxM.36.3990 196 DVEILTR|EE 0.086 . LmxM.36.3990 202 REEGAVK|KE 0.059 . LmxM.36.3990 203 EEGAVKK|EE 0.080 . LmxM.36.3990 208 KKEEAEK|AE 0.061 . LmxM.36.3990 211 EAEKAEK|AE 0.055 . LmxM.36.3990 214 KAEKAEK|AE 0.061 . LmxM.36.3990 217 KAEKAEK|AE 0.062 . LmxM.36.3990 225 ENEAQAK|E- 0.068 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.3990 ATGTTCCGTCGTCTTGCCACCCGCTCCACGTCCTTCGTGACGGGGGCCGCTGTGCAGGCG CGTCACACCACCATTCTTTCCGTCCGAAAGGGCAACAAAGTAATCCTTATTGGGGACCGT CAGGTGACCTTGGGCGAGCGTATTGTGGCGAAGAGTAGCGCCTGCAAGCTGCGCAAGCTC AACGACAACGTTGTGATTGGCTTCGCCGGCAGCACGGCGGATGCTTTTGCGTTGATGGAA AAACTGGAAAACAAGCTGAACGACTTTCCGGAACAGCTGTCTCGCGCCGCGGTGGAGCTG GCAAAGGACTGGCGGACGGACCGTGCCCTCCGCCGCCTCGAGGCGTCCCTCATTGTGTGC AGCAAAGAGGAGACGTTGGAGATTGACGGGCAGGGCAACGTAATCACCCCTGAGGCCGAC GGCATCATCGCCATTGGCTCGGGTGGCACGTACGCCAAGGCGGCGGCTCGTGCGCTTATT GACGTTGACGGCTATGATGCAGAGCGCATCGCGCGCAAGGCGATGAGAATTGCGACCGAC ATCGATGTCTTCAGCAACAGCAACTGGGATGTGGAGATCTTGACGCGTGAGGAAGGAGCG GTAAAGAAGGAGGAGGCGGAGAAGGCGGAGAAGGCGGAAAAGGCAGAGAAGGCAGAGAAT GAGGCGCAGGCCAAGGAATAG
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  • Fasta :-

    MFRRLATRSTSFVTGAAVQARHTTILSVRKGNKVILIGDRQVTLGERIVAKSSACKLRKL NDNVVIGFAGSTADAFALMEKLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVC SKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALIDVDGYDAERIARKAMRIATD IDVFSNSNWDVEILTREEGAVKKEEAEKAEKAEKAEKAENEAQAKE

  • title: active site
  • coordinates: T23,D39,Q41,K56,S147
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India