LmxM.36.4450 | mitochondrial intermediate peptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.4450mTP0.0002920.0000580.999650CS pos: 28-29. VRF-TS. Pr: 0.8243
No Results

  • Fasta :-

    >LmxM.36.4450 MLRRLVSCASPLRLRGCGAAGVFGNVRFTSTADASAAAPISSSKASTYGTVPDIPNLNFL SSPDNLLNTVDGTVEVCEALLKAIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSPEGRKGLTPESVKNVVQLRRDMEN NGIHLADAQRAKVTEMNIEKEELAMRFLTEQGSTNPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRLQAEAEMDLIRKNVGEVRNRVNITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINTSVKKFHVYDEH KRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRSSIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDVVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTEAGVLST LSFEHLSGYPAGYYGYLYSLSVARRIWTQKFERDPLNRDAGRELVEKVMCHGAACDPRET IEKYLGDNLTDIDIWA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/430 Sequence name : 430 Sequence length : 676 VALUES OF COMPUTED PARAMETERS Coef20 : 4.938 CoefTot : 0.677 ChDiff : -12 ZoneTo : 52 KR : 6 DE : 1 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.059 0.082 0.432 MesoH : -0.293 0.323 -0.230 0.209 MuHd_075 : 26.275 15.429 6.499 5.778 MuHd_095 : 25.770 19.887 6.734 6.485 MuHd_100 : 20.102 16.630 4.866 5.468 MuHd_105 : 24.493 15.066 5.512 5.553 Hmax_075 : 13.125 14.233 6.155 4.069 Hmax_095 : 3.587 12.775 2.338 2.476 Hmax_100 : 11.600 17.200 4.369 5.330 Hmax_105 : 10.850 13.000 0.747 2.459 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1675 0.8325 DFMC : 0.1108 0.8892 This protein is probably imported in mitochondria. f(Ser) = 0.1538 f(Arg) = 0.0962 CMi = 0.75188 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 676 LmxM.36.4450 MLRRLVSCASPLRLRGCGAAGVFGNVRFTSTADASAAAPISSSKASTYGTVPDIPNLNFLSSPDNLLNTVDGTVEVCEAL 80 LKAIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPDENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSPEGR 160 KGLTPESVKNVVQLRRDMENNGIHLADAQRAKVTEMNIEKEELAMRFLTEQGSTNPFGTLRYLLQCRYELAQLLGFESYA 240 EQQLRGTMLENQENVWHFLCSIASKYRLQAEAEMDLIRKNVGEVRNRVNITDEYRARVASSMRRDAEPENALEYFSVANC 320 VRGIQCLCSEVFGVKLEEVPLNPEEVINTSVKKFHVYDEHKRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATV 400 GLRLPKRQYPVVVLTANVGALKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRSSIDYVETF 480 SQLFEQFLSSHEFLKLWAHRINTREPISFDVVQKRNSAANMFKHLDMLDQVVLSAVDQALHGPQPLTVYFPHGDQGHVGK 560 RTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTEAGVLSTLSFEHLSGYPAGYYGYLYSLSVARRIWTQKFERDPLNRDA 640 GRELVEKVMCHGAACDPRETIEKYLGDNLTDIDIWA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.4450 3 ----MLR|RL 0.068 . LmxM.36.4450 4 ---MLRR|LV 0.175 . LmxM.36.4450 13 SCASPLR|LR 0.084 . LmxM.36.4450 15 ASPLRLR|GC 0.106 . LmxM.36.4450 27 GVFGNVR|FT 0.115 . LmxM.36.4450 44 APISSSK|AS 0.066 . LmxM.36.4450 82 VCEALLK|AI 0.059 . LmxM.36.4450 86 LLKAIPK|AK 0.074 . LmxM.36.4450 88 KAIPKAK|TP 0.070 . LmxM.36.4450 93 AKTPQAK|HD 0.064 . LmxM.36.4450 115 DPCEFVR|QI 0.120 . LmxM.36.4450 124 HPDENYK|RG 0.055 . LmxM.36.4450 125 PDENYKR|GA 0.260 . LmxM.36.4450 133 ASLAFQK|GY 0.066 . LmxM.36.4450 144 MCEVNSR|RD 0.068 . LmxM.36.4450 145 CEVNSRR|DL 0.225 . LmxM.36.4450 152 DLYDVIK|EL 0.066 . LmxM.36.4450 160 LDSPEGR|KG 0.083 . LmxM.36.4450 161 DSPEGRK|GL 0.078 . LmxM.36.4450 169 LTPESVK|NV 0.067 . LmxM.36.4450 175 KNVVQLR|RD 0.083 . LmxM.36.4450 176 NVVQLRR|DM 0.168 . LmxM.36.4450 190 HLADAQR|AK 0.091 . LmxM.36.4450 192 ADAQRAK|VT 0.075 . LmxM.36.4450 200 TEMNIEK|EE 0.058 . LmxM.36.4450 206 KEELAMR|FL 0.109 . LmxM.36.4450 221 NPFGTLR|YL 0.094 . LmxM.36.4450 227 RYLLQCR|YE 0.085 . LmxM.36.4450 245 YAEQQLR|GT 0.091 . LmxM.36.4450 265 LCSIASK|YR 0.090 . LmxM.36.4450 267 SIASKYR|LQ 0.103 . LmxM.36.4450 278 AEMDLIR|KN 0.078 . LmxM.36.4450 279 EMDLIRK|NV 0.115 . LmxM.36.4450 285 KNVGEVR|NR 0.074 . LmxM.36.4450 287 VGEVRNR|VN 0.077 . LmxM.36.4450 295 NITDEYR|AR 0.069 . LmxM.36.4450 297 TDEYRAR|VA 0.127 . LmxM.36.4450 303 RVASSMR|RD 0.084 . LmxM.36.4450 304 VASSMRR|DA 0.341 . LmxM.36.4450 322 SVANCVR|GI 0.096 . LmxM.36.4450 335 SEVFGVK|LE 0.058 . LmxM.36.4450 352 VINTSVK|KF 0.069 . LmxM.36.4450 353 INTSVKK|FH 0.098 . LmxM.36.4450 361 HVYDEHK|RF 0.058 . LmxM.36.4450 362 VYDEHKR|FL 0.244 . LmxM.36.4450 377 MYMNEMK|YC 0.074 . LmxM.36.4450 403 LATVGLR|LP 0.070 . LmxM.36.4450 406 VGLRLPK|RQ 0.092 . LmxM.36.4450 407 GLRLPKR|QY 0.192 . LmxM.36.4450 422 ANVGALK|PA 0.063 . LmxM.36.4450 426 ALKPAQR|RP 0.085 . LmxM.36.4450 427 LKPAQRR|PD 0.163 . LmxM.36.4450 471 QNLAGTR|SS 0.122 . LmxM.36.4450 495 SSHEFLK|LW 0.071 . LmxM.36.4450 500 LKLWAHR|IN 0.094 . LmxM.36.4450 504 AHRINTR|EP 0.074 . LmxM.36.4450 514 SFDVVQK|RN 0.070 . LmxM.36.4450 515 FDVVQKR|NS 0.190 . LmxM.36.4450 523 SAANMFK|HL 0.075 . LmxM.36.4450 560 DQGHVGK|RT 0.070 . LmxM.36.4450 561 QGHVGKR|TL 0.268 . LmxM.36.4450 571 DLGDYGR|GG 0.081 . LmxM.36.4450 578 GGFNMAR|AL 0.107 . LmxM.36.4450 585 ALIQVAK|PV 0.144 . LmxM.36.4450 624 YSLSVAR|RI 0.097 . LmxM.36.4450 625 SLSVARR|IW 0.276 . LmxM.36.4450 630 RRIWTQK|FE 0.073 . LmxM.36.4450 633 WTQKFER|DP 0.080 . LmxM.36.4450 638 ERDPLNR|DA 0.183 . LmxM.36.4450 642 LNRDAGR|EL 0.105 . LmxM.36.4450 647 GRELVEK|VM 0.064 . LmxM.36.4450 658 GAACDPR|ET 0.106 . LmxM.36.4450 663 PRETIEK|YL 0.095 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.4450 ATGCTTCGCCGACTTGTATCCTGCGCATCGCCGCTGCGGTTGCGGGGCTGTGGGGCGGCT GGTGTCTTCGGTAATGTCCGTTTTACTTCCACTGCGGACGCATCGGCAGCAGCGCCCATC AGCTCCTCCAAGGCGTCGACCTACGGCACTGTTCCCGATATCCCGAACCTGAACTTCCTT TCCAGCCCTGATAACCTGCTTAACACCGTGGATGGCACGGTGGAGGTGTGCGAGGCGTTG CTGAAGGCGATTCCAAAGGCCAAGACGCCACAGGCAAAGCATGACCTCATCGACTCCACC AGCAACGTGCTCTGTCTGCTGCTGGACCCGTGCGAATTTGTGCGTCAAATTCACCCAGAC GAGAACTACAAGCGTGGCGCCTCCCTCGCCTTCCAGAAGGGGTACGAGTACATGTGTGAG GTGAACTCGCGGCGCGACCTCTACGACGTCATTAAGGAGCTCGATAGTCCGGAGGGCCGC AAAGGCCTGACGCCGGAGTCCGTCAAGAACGTCGTGCAGCTGAGGAGGGACATGGAGAAC AACGGCATCCATCTTGCAGACGCGCAGCGCGCCAAGGTGACGGAGATGAACATCGAGAAG GAAGAACTTGCGATGCGCTTCTTGACTGAGCAGGGCTCGACCAACCCTTTCGGCACTCTC CGGTACCTCCTTCAGTGCCGCTACGAGCTGGCGCAGTTGCTGGGGTTTGAGAGCTACGCC GAGCAACAGCTGCGCGGGACGATGCTGGAGAATCAGGAGAACGTGTGGCACTTCCTTTGT AGCATTGCGAGCAAATATCGTCTGCAGGCGGAGGCAGAGATGGACCTCATTCGTAAAAAT GTCGGTGAGGTGCGCAATCGTGTCAACATCACCGATGAATACCGAGCCCGCGTAGCGTCC TCGATGCGGCGCGATGCGGAGCCGGAGAATGCGCTGGAATACTTTTCCGTCGCGAACTGC GTGCGTGGCATTCAGTGTCTCTGCTCAGAGGTCTTCGGTGTGAAGCTGGAGGAGGTCCCT CTCAACCCCGAAGAGGTTATCAACACCAGTGTCAAGAAGTTTCATGTGTACGATGAGCAC AAGAGGTTCCTCGGCGTGATTGTGCTGGACATGTACATGAACGAGATGAAGTACTGCCAG GCTGGTCACTTGACGCTGCAACTCGGCTGCGTGCCGCACCAGGAGGCCCTCGCCACGGTG GGGCTGCGCCTACCAAAGCGGCAGTACCCGGTGGTTGTGCTCACTGCAAATGTTGGCGCG CTAAAGCCGGCGCAGCGCCGCCCCGATGGCACATACGACGATGAGTCCACCCTAATGCAG CCGAACGAGGTGACGACCGTTTTCCATGAGTTTGGCCACGCCATGCACACCATCTTTGGA CAGACCCAGGTGCAAAACTTGGCCGGCACGCGCTCAAGCATCGACTACGTTGAGACGTTC TCGCAGCTCTTTGAGCAGTTCCTCTCGTCGCACGAGTTCTTAAAGCTGTGGGCGCACCGC ATCAACACTCGTGAGCCGATATCCTTCGACGTTGTGCAGAAGCGCAACAGCGCAGCGAAC ATGTTCAAGCACCTGGATATGCTGGACCAGGTGGTGCTCTCCGCGGTGGACCAGGCGCTG CACGGGCCGCAGCCGTTAACGGTGTACTTCCCGCACGGGGACCAGGGTCACGTGGGCAAG CGCACGCTCGGTGACCTGGGCGACTACGGCCGCGGTGGGTTCAACATGGCACGGGCCCTC ATTCAGGTGGCGAAGCCGGTCTCCGTCGCCGAGCCGACCGAAGCGGGCGTCCTGAGTACG CTATCCTTTGAGCACCTTTCTGGATACCCGGCAGGTTACTACGGCTACCTGTACAGCCTG AGCGTGGCGCGTCGAATCTGGACGCAAAAGTTCGAGCGCGACCCGCTCAACCGCGATGCC GGGCGTGAGCTGGTAGAGAAAGTCATGTGCCACGGCGCCGCCTGTGACCCACGCGAAACC ATCGAGAAATACCTCGGCGACAACCTCACAGATATTGATATTTGGGCCTAA
  • Download Fasta

  • Fasta :-

    MLRRLVSCASPLRLRGCGAAGVFGNVRFTSTADASAAAPISSSKASTYGTVPDIPNLNFL SSPDNLLNTVDGTVEVCEALLKAIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRGASLAFQKGYEYMCEVNSRRDLYDVIKELDSPEGRKGLTPESVKNVVQLRRDMEN NGIHLADAQRAKVTEMNIEKEELAMRFLTEQGSTNPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRLQAEAEMDLIRKNVGEVRNRVNITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINTSVKKFHVYDEH KRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDESTLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRSSIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDVVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTEAGVLST LSFEHLSGYPAGYYGYLYSLSVARRIWTQKFERDPLNRDAGRELVEKVMCHGAACDPRET IEKYLGDNLTDIDIWA

    No Results
  • title: Zn binding site
  • coordinates: H449,H453,E478
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.4450156 SKELDSPEGR0.997unspLmxM.36.4450156 SKELDSPEGR0.997unspLmxM.36.4450156 SKELDSPEGR0.997unspLmxM.36.4450301 SRVASSMRRD0.992unspLmxM.36.4450534 SQVVLSAVDQ0.99unspLmxM.36.445046 SSSKASTYGT0.994unspLmxM.36.4450143 SCEVNSRRDL0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India