LmxM.36.5560 | metallo-peptidase, Clan MG, Family M24

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004177      GO:0030145      

  • Computed_GO_Functions:  aminopeptidase activity      manganese ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.36.5560mTP0.0251690.0243620.950469CS pos: 25-26. ARW-IG. Pr: 0.2926
No Results

  • Fasta :-

    >LmxM.36.5560 MLRRAWRTAPVQRLSVSVTLGLARWIGGATAVAEEVSAQEYAERRRWFLECLPDNSVVLL PAADESLYSHDILWPHRQDSLWYHLFGMRVPMRRQLAPPSSAITEDVRVTIAAFAKGMKG APAQTLLCVPPATTDTATLVWGSEAVPLSQYKRLLCADADGGMLSPRTHENVVTTNEVGT VCAAVHRLITDMAQQQVKEWAEDSDLELSALPGGGGGVQAGRLLPLGVLPRVFAAYPQQL RWDGRGYRLRQPAASMLLAKTQDAAHSSSVFHHPLEAFFSTLSAMPFVVHLPRPLLLATA AAPGQQSACSVVTFRYSAVAGHTPGLVPCTLRRPNSPTAVATASENAGNEPDATMQLSLP IRRSDAYAWLYRQVKGPSQLRQHLRSARATEDAFLQLMHRASATLSEHVLYCAFQRTVCD ISEHAGAAAQVRSAYIPVVASGVRGSEIHFTDNDGVAAPGDVVRVDAGVEVDGVPTDCTR TLPIGSSRFPSSYVPLYEGLLEIQRKLLQCMRPGVSVRDMAGMHIDETRALLCSLGVDVR RAAPSSAAQSPFPHESATATSSQEQQVPLALVRSCFCAHSFGHFFGLDIHEELSSVLRPL KTAAAKEKVTRRQRSTPRILQGGMMHTVEPGVYVPSAQRAALFGLEKAHLPIAFHGGVGV QIEDDVLVLPSPDGEDVDVCKGDEPLVHCPWSRGDYLQHALAAFHRYYGSGDAGWMPSLL VSVCDAHVPTARGGRMTAATQNVLRFLFAQRVAMEGLPKAKASLATDVCAIQQQTFVPNP AYVDGPPVPHAAVSDWYPYSSIVLTATIPKDIALIEGVMRQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/921 Sequence name : 921 Sequence length : 821 VALUES OF COMPUTED PARAMETERS Coef20 : 5.283 CoefTot : 1.075 ChDiff : -2 ZoneTo : 33 KR : 5 DE : 0 CleavSite : 34 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.371 0.103 0.562 MesoH : 0.471 0.575 -0.141 0.308 MuHd_075 : 40.945 18.756 8.499 9.837 MuHd_095 : 32.674 21.638 7.865 8.108 MuHd_100 : 29.855 17.533 6.335 7.093 MuHd_105 : 32.765 16.439 6.760 6.890 Hmax_075 : 12.017 10.700 1.127 4.725 Hmax_095 : 15.137 19.200 3.259 6.309 Hmax_100 : 16.400 18.800 2.665 6.430 Hmax_105 : 7.467 19.600 -0.064 3.967 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0080 0.9920 DFMC : 0.0123 0.9877 This protein is probably imported in mitochondria. f(Ser) = 0.0606 f(Arg) = 0.1515 CMi = 0.21482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 821 LmxM.36.5560 MLRRAWRTAPVQRLSVSVTLGLARWIGGATAVAEEVSAQEYAERRRWFLECLPDNSVVLLPAADESLYSHDILWPHRQDS 80 LWYHLFGMRVPMRRQLAPPSSAITEDVRVTIAAFAKGMKGAPAQTLLCVPPATTDTATLVWGSEAVPLSQYKRLLCADAD 160 GGMLSPRTHENVVTTNEVGTVCAAVHRLITDMAQQQVKEWAEDSDLELSALPGGGGGVQAGRLLPLGVLPRVFAAYPQQL 240 RWDGRGYRLRQPAASMLLAKTQDAAHSSSVFHHPLEAFFSTLSAMPFVVHLPRPLLLATAAAPGQQSACSVVTFRYSAVA 320 GHTPGLVPCTLRRPNSPTAVATASENAGNEPDATMQLSLPIRRSDAYAWLYRQVKGPSQLRQHLRSARATEDAFLQLMHR 400 ASATLSEHVLYCAFQRTVCDISEHAGAAAQVRSAYIPVVASGVRGSEIHFTDNDGVAAPGDVVRVDAGVEVDGVPTDCTR 480 TLPIGSSRFPSSYVPLYEGLLEIQRKLLQCMRPGVSVRDMAGMHIDETRALLCSLGVDVRRAAPSSAAQSPFPHESATAT 560 SSQEQQVPLALVRSCFCAHSFGHFFGLDIHEELSSVLRPLKTAAAKEKVTRRQRSTPRILQGGMMHTVEPGVYVPSAQRA 640 ALFGLEKAHLPIAFHGGVGVQIEDDVLVLPSPDGEDVDVCKGDEPLVHCPWSRGDYLQHALAAFHRYYGSGDAGWMPSLL 720 VSVCDAHVPTARGGRMTAATQNVLRFLFAQRVAMEGLPKAKASLATDVCAIQQQTFVPNPAYVDGPPVPHAAVSDWYPYS 800 SIVLTATIPKDIALIEGVMRQ 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ..................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.36.5560 3 ----MLR|RA 0.081 . LmxM.36.5560 4 ---MLRR|AW 0.173 . LmxM.36.5560 7 MLRRAWR|TA 0.389 . LmxM.36.5560 13 RTAPVQR|LS 0.089 . LmxM.36.5560 24 VTLGLAR|WI 0.110 . LmxM.36.5560 44 AQEYAER|RR 0.071 . LmxM.36.5560 45 QEYAERR|RW 0.093 . LmxM.36.5560 46 EYAERRR|WF 0.128 . LmxM.36.5560 77 DILWPHR|QD 0.078 . LmxM.36.5560 89 YHLFGMR|VP 0.064 . LmxM.36.5560 93 GMRVPMR|RQ 0.082 . LmxM.36.5560 94 MRVPMRR|QL 0.138 . LmxM.36.5560 108 AITEDVR|VT 0.078 . LmxM.36.5560 116 TIAAFAK|GM 0.087 . LmxM.36.5560 119 AFAKGMK|GA 0.073 . LmxM.36.5560 152 VPLSQYK|RL 0.059 . LmxM.36.5560 153 PLSQYKR|LL 0.213 . LmxM.36.5560 167 GGMLSPR|TH 0.116 . LmxM.36.5560 187 VCAAVHR|LI 0.102 . LmxM.36.5560 198 MAQQQVK|EW 0.062 . LmxM.36.5560 222 GGVQAGR|LL 0.071 . LmxM.36.5560 231 PLGVLPR|VF 0.089 . LmxM.36.5560 241 AYPQQLR|WD 0.082 . LmxM.36.5560 245 QLRWDGR|GY 0.107 . LmxM.36.5560 248 WDGRGYR|LR 0.172 . LmxM.36.5560 250 GRGYRLR|QP 0.102 . LmxM.36.5560 260 ASMLLAK|TQ 0.076 . LmxM.36.5560 293 FVVHLPR|PL 0.079 . LmxM.36.5560 315 CSVVTFR|YS 0.127 . LmxM.36.5560 332 LVPCTLR|RP 0.061 . LmxM.36.5560 333 VPCTLRR|PN 0.136 . LmxM.36.5560 362 QLSLPIR|RS 0.100 . LmxM.36.5560 363 LSLPIRR|SD 0.131 . LmxM.36.5560 372 AYAWLYR|QV 0.091 . LmxM.36.5560 375 WLYRQVK|GP 0.162 . LmxM.36.5560 381 KGPSQLR|QH 0.069 . LmxM.36.5560 385 QLRQHLR|SA 0.294 . LmxM.36.5560 388 QHLRSAR|AT 0.442 . LmxM.36.5560 400 FLQLMHR|AS 0.078 . LmxM.36.5560 416 LYCAFQR|TV 0.129 . LmxM.36.5560 432 GAAAQVR|SA 0.182 . LmxM.36.5560 444 VVASGVR|GS 0.091 . LmxM.36.5560 464 APGDVVR|VD 0.104 . LmxM.36.5560 480 VPTDCTR|TL 0.075 . LmxM.36.5560 488 LPIGSSR|FP 0.107 . LmxM.36.5560 505 GLLEIQR|KL 0.069 . LmxM.36.5560 506 LLEIQRK|LL 0.097 . LmxM.36.5560 512 KLLQCMR|PG 0.079 . LmxM.36.5560 518 RPGVSVR|DM 0.139 . LmxM.36.5560 529 MHIDETR|AL 0.098 . LmxM.36.5560 540 SLGVDVR|RA 0.090 . LmxM.36.5560 541 LGVDVRR|AA 0.160 . LmxM.36.5560 573 VPLALVR|SC 0.102 . LmxM.36.5560 598 ELSSVLR|PL 0.100 . LmxM.36.5560 601 SVLRPLK|TA 0.137 . LmxM.36.5560 606 LKTAAAK|EK 0.060 . LmxM.36.5560 608 TAAAKEK|VT 0.089 . LmxM.36.5560 611 AKEKVTR|RQ 0.082 . LmxM.36.5560 612 KEKVTRR|QR 0.136 . LmxM.36.5560 614 KVTRRQR|ST 0.385 . LmxM.36.5560 618 RQRSTPR|IL 0.125 . LmxM.36.5560 639 YVPSAQR|AA 0.075 . LmxM.36.5560 647 ALFGLEK|AH 0.061 . LmxM.36.5560 681 EDVDVCK|GD 0.075 . LmxM.36.5560 693 VHCPWSR|GD 0.084 . LmxM.36.5560 706 ALAAFHR|YY 0.152 . LmxM.36.5560 732 AHVPTAR|GG 0.091 . LmxM.36.5560 735 PTARGGR|MT 0.287 . LmxM.36.5560 745 ATQNVLR|FL 0.138 . LmxM.36.5560 751 RFLFAQR|VA 0.097 . LmxM.36.5560 759 AMEGLPK|AK 0.059 . LmxM.36.5560 761 EGLPKAK|AS 0.062 . LmxM.36.5560 810 LTATIPK|DI 0.081 . LmxM.36.5560 820 LIEGVMR|Q- 0.093 . ____________________________^_________________

  • Fasta :-

    >LmxM.36.5560 ATGCTTCGTCGAGCATGGCGTACCGCACCAGTGCAAAGGCTTAGTGTGTCGGTCACGTTA GGCTTGGCGCGCTGGATCGGTGGCGCAACCGCAGTAGCTGAAGAAGTGAGCGCGCAGGAG TACGCGGAGCGGCGCAGGTGGTTCCTGGAGTGTCTCCCAGATAATTCCGTTGTTCTTCTC CCCGCCGCCGATGAATCGCTGTACAGTCACGATATCCTGTGGCCGCATCGTCAAGACTCC TTGTGGTACCACCTGTTTGGCATGCGTGTCCCGATGCGGCGTCAGCTCGCCCCGCCTTCG TCTGCGATCACCGAGGATGTGCGGGTCACCATCGCGGCTTTTGCCAAGGGCATGAAGGGC GCCCCCGCGCAAACCCTTCTCTGTGTGCCGCCCGCCACCACGGACACAGCAACGCTGGTG TGGGGATCTGAGGCGGTGCCGCTCAGCCAGTACAAACGTCTTCTCTGCGCAGATGCTGAT GGTGGTATGCTATCGCCTCGCACGCACGAAAATGTGGTCACGACGAACGAAGTGGGTACC GTCTGCGCGGCGGTGCACCGGCTTATCACAGACATGGCACAGCAGCAGGTAAAGGAATGG GCAGAAGACAGCGACCTCGAGCTGTCAGCGTTGCCGGGAGGAGGTGGTGGTGTGCAGGCA GGGAGGCTCCTCCCGCTGGGCGTCCTGCCGAGAGTGTTCGCGGCGTATCCGCAACAGCTA CGCTGGGATGGAAGAGGCTATCGCCTTCGCCAGCCAGCGGCATCGATGCTGCTCGCAAAA ACGCAGGATGCAGCCCACAGCAGCTCTGTCTTTCACCATCCACTTGAGGCGTTCTTCTCG ACGCTGAGCGCGATGCCCTTTGTGGTGCATCTGCCACGTCCACTCCTTCTTGCAACCGCC GCAGCGCCGGGGCAGCAGTCGGCCTGCAGCGTAGTCACCTTCCGCTACTCGGCAGTCGCC GGCCACACCCCTGGGCTCGTGCCCTGCACCCTACGAAGACCGAATTCTCCGACTGCTGTC GCCACCGCATCCGAAAACGCTGGCAACGAGCCGGATGCCACGATGCAGCTGTCTCTACCT ATTCGTCGCAGTGATGCATACGCGTGGCTCTACCGGCAGGTCAAAGGCCCTTCTCAACTA CGACAGCACCTTCGCAGTGCCCGCGCAACAGAGGATGCTTTTCTGCAGCTCATGCACCGC GCCTCCGCGACATTGTCGGAGCACGTGCTGTACTGTGCGTTTCAGCGGACCGTGTGCGAC ATTAGCGAGCACGCCGGGGCAGCTGCCCAGGTACGATCCGCGTACATTCCCGTTGTGGCA AGCGGCGTGCGCGGCAGCGAAATCCACTTCACCGACAACGACGGTGTGGCCGCCCCGGGT GACGTCGTGCGCGTAGACGCTGGTGTGGAGGTGGACGGCGTCCCCACGGACTGCACGCGG ACACTTCCGATAGGCAGTTCACGCTTTCCCTCCTCGTACGTGCCGCTGTACGAGGGATTG CTCGAGATTCAGCGCAAGCTACTCCAGTGCATGAGGCCTGGGGTTTCCGTCCGTGACATG GCTGGAATGCACATCGACGAAACGCGGGCGTTGCTATGCTCGCTTGGGGTCGATGTCCGT CGTGCAGCACCCTCGTCAGCCGCACAAAGCCCGTTCCCCCACGAGTCGGCTACTGCAACC TCGTCGCAGGAGCAGCAGGTACCGCTTGCCCTCGTGCGCTCCTGCTTTTGTGCTCACTCG TTCGGGCATTTCTTTGGCCTCGACATCCATGAGGAGCTAAGTAGCGTCTTGCGGCCACTC AAAACGGCAGCGGCAAAGGAAAAGGTCACGCGGCGGCAGCGATCGACTCCGCGCATCTTG CAAGGCGGCATGATGCACACTGTTGAGCCTGGCGTCTACGTGCCGAGCGCACAAAGAGCG GCCCTCTTCGGCCTCGAGAAGGCGCACTTACCGATCGCGTTTCACGGCGGTGTTGGTGTG CAAATCGAAGACGATGTTCTCGTCTTACCTTCCCCGGATGGCGAGGACGTCGATGTTTGC AAAGGTGACGAGCCTCTGGTGCACTGTCCGTGGAGTCGTGGAGACTACCTCCAGCACGCC CTCGCTGCTTTTCATCGCTACTACGGCAGTGGAGACGCGGGGTGGATGCCCTCCCTGCTG GTGTCTGTGTGCGACGCGCATGTGCCCACAGCAAGGGGGGGACGCATGACTGCTGCTACG CAAAATGTGTTGCGCTTCCTGTTTGCCCAGCGAGTGGCTATGGAAGGGTTACCGAAGGCA AAGGCATCTCTGGCAACGGACGTGTGCGCCATACAGCAACAGACATTTGTTCCGAATCCA GCGTACGTGGACGGACCACCAGTGCCACACGCAGCAGTCTCTGACTGGTACCCGTACTCG AGCATCGTCTTGACAGCAACTATCCCAAAGGACATTGCGCTTATAGAAGGTGTCATGCGG CAGTGA
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  • Fasta :-

    MLRRAWRTAPVQRLSVSVTLGLARWIGGATAVAEEVSAQEYAERRRWFLECLPDNSVVLL PAADESLYSHDILWPHRQDSLWYHLFGMRVPMRRQLAPPSSAITEDVRVTIAAFAKGMKG APAQTLLCVPPATTDTATLVWGSEAVPLSQYKRLLCADADGGMLSPRTHENVVTTNEVGT VCAAVHRLITDMAQQQVKEWAEDSDLELSALPGGGGGVQAGRLLPLGVLPRVFAAYPQQL RWDGRGYRLRQPAASMLLAKTQDAAHSSSVFHHPLEAFFSTLSAMPFVVHLPRPLLLATA AAPGQQSACSVVTFRYSAVAGHTPGLVPCTLRRPNSPTAVATASENAGNEPDATMQLSLP IRRSDAYAWLYRQVKGPSQLRQHLRSARATEDAFLQLMHRASATLSEHVLYCAFQRTVCD ISEHAGAAAQVRSAYIPVVASGVRGSEIHFTDNDGVAAPGDVVRVDAGVEVDGVPTDCTR TLPIGSSRFPSSYVPLYEGLLEIQRKLLQCMRPGVSVRDMAGMHIDETRALLCSLGVDVR RAAPSSAAQSPFPHESATATSSQEQQVPLALVRSCFCAHSFGHFFGLDIHEELSSVLRPL KTAAAKEKVTRRQRSTPRILQGGMMHTVEPGVYVPSAQRAALFGLEKAHLPIAFHGGVGV QIEDDVLVLPSPDGEDVDVCKGDEPLVHCPWSRGDYLQHALAAFHRYYGSGDAGWMPSLL VSVCDAHVPTARGGRMTAATQNVLRFLFAQRVAMEGLPKAKASLATDVCAIQQQTFVPNP AYVDGPPVPHAAVSDWYPYSSIVLTATIPKDIALIEGVMRQ

  • title: active site
  • coordinates: H449,D466,D477,H583,E629,E663
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.36.5560615 SRRQRSTPRI0.995unspLmxM.36.5560615 SRRQRSTPRI0.995unspLmxM.36.5560615 SRRQRSTPRI0.995unspLmxM.36.5560386 SQHLRSARAT0.994unspLmxM.36.5560516 SRPGVSVRDM0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India