NCLIV_001040 | putative der1-like family domain-containing protein,conserved

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_001040OTHER0.9999740.0000180.000009
No Results

  • Fasta :-

    >NCLIV_001040 MDPLPHGVGSGGGYPSNGPEAWFYSLPPVTRAVTCITFACTLLSSIELMPARLLILDWEL VSQKLQVWRLLTNVLYIGRFSLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQT LCLDFISLLFFWPTGLHLLGGSLLFAVLYYWSRRESYTPVSIYFLTVQGHQLPFVLLLLH LLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKIFDRLAERLSNRPEIGRRP TSRTGVVSGGSGGGGPGGPGGNSWGGSVRPRPAAGGGSSGTQAFTGRGYRIGSD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_001040.fa Sequence name : NCLIV_001040 Sequence length : 294 VALUES OF COMPUTED PARAMETERS Coef20 : 1.714 CoefTot : -2.570 ChDiff : 4 ZoneTo : 46 KR : 1 DE : 2 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.865 2.200 0.363 0.736 MesoH : 0.779 1.045 -0.054 0.484 MuHd_075 : 18.496 12.891 5.465 5.863 MuHd_095 : 29.767 19.090 7.582 6.204 MuHd_100 : 33.910 21.973 8.276 7.348 MuHd_105 : 30.958 27.575 7.453 8.312 Hmax_075 : 15.500 6.417 1.678 4.890 Hmax_095 : 12.513 9.800 1.254 4.760 Hmax_100 : 14.600 11.900 1.498 5.380 Hmax_105 : 14.000 23.537 2.284 6.676 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9976 0.0024 DFMC : 0.9983 0.0017
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 294 NCLIV_001040 MDPLPHGVGSGGGYPSNGPEAWFYSLPPVTRAVTCITFACTLLSSIELMPARLLILDWELVSQKLQVWRLLTNVLYIGRF 80 SLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQTLCLDFISLLFFWPTGLHLLGGSLLFAVLYYWSRRESYTPV 160 SIYFLTVQGHQLPFVLLLLHLLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKIFDRLAERLSNRPEIGRRP 240 TSRTGVVSGGSGGGGPGGPGGNSWGGSVRPRPAAGGGSSGTQAFTGRGYRIGSD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_001040 31 SLPPVTR|AV 0.144 . NCLIV_001040 52 IELMPAR|LL 0.073 . NCLIV_001040 64 WELVSQK|LQ 0.055 . NCLIV_001040 69 QKLQVWR|LL 0.098 . NCLIV_001040 79 NVLYIGR|FS 0.072 . NCLIV_001040 109 VFVQASK|GA 0.060 . NCLIV_001040 153 VLYYWSR|RE 0.072 . NCLIV_001040 154 LYYWSRR|ES 0.119 . NCLIV_001040 185 LHLLMGK|DL 0.061 . NCLIV_001040 204 HIYYFFR|EI 0.114 . NCLIV_001040 221 LLSYTPK|IF 0.076 . NCLIV_001040 225 TPKIFDR|LA 0.116 . NCLIV_001040 229 FDRLAER|LS 0.073 . NCLIV_001040 233 AERLSNR|PE 0.092 . NCLIV_001040 238 NRPEIGR|RP 0.070 . NCLIV_001040 239 RPEIGRR|PT 0.160 . NCLIV_001040 243 GRRPTSR|TG 0.116 . NCLIV_001040 269 SWGGSVR|PR 0.099 . NCLIV_001040 271 GGSVRPR|PA 0.205 . NCLIV_001040 287 TQAFTGR|GY 0.128 . NCLIV_001040 290 FTGRGYR|IG 0.225 . ____________________________^_________________

  • Fasta :-

    >NCLIV_001040 ATGGACCCGCTCCCCCACGGAGTGGGCAGTGGCGGTGGCTATCCGTCGAATGGCCCTGAA GCGTGGTTCTACTCCCTCCCTCCGGTGACCCGTGCGGTCACGTGCATCACGTTCGCTTGC ACTCTGCTGTCGTCTATTGAGTTGATGCCCGCTCGTCTGTTAATTTTGGACTGGGAGTTG GTTTCTCAGAAGCTTCAGGTCTGGAGGCTGCTCACGAACGTCTTATACATTGGCAGGTTC TCTCTAGGTTGGGTTCTCCATATGTACATGTGGACCCAAGTTAGTTCCGATCTCGAGAAC AATGCCGTGTTCGTTCAAGCTAGCAAAGGGGCGTACCTTTACTTCATCGTACTCCAGACC CTCTGTCTAGACTTCATCTCTCTGCTCTTCTTTTGGCCCACGGGCCTTCACTTGCTGGGT GGCTCTCTCCTGTTCGCTGTTCTCTACTACTGGAGCCGCCGCGAGTCGTACACTCCAGTG TCTATTTATTTTCTGACTGTCCAGGGCCACCAGCTGCCTTTCGTTCTGCTCCTTCTGCAT CTTTTGATGGGAAAGGATCTCTGGTCTGACGCCATCGGCCTTCTCTCCGGCCACATTTAC TACTTCTTTAGGGAGATTTTACCAGCTCAAGGCGGCGCAGACTTACTGAGTTACACCCCC AAAATTTTCGACCGGCTGGCAGAAAGGCTTTCGAACCGTCCGGAAATCGGCAGAAGACCA ACCAGCCGAACCGGAGTAGTCTCAGGCGGTTCGGGTGGAGGCGGGCCAGGTGGCCCTGGC GGCAACAGCTGGGGAGGTTCTGTCAGGCCGCGACCTGCTGCAGGCGGTGGATCCTCGGGA ACCCAAGCATTTACGGGGCGTGGCTATCGAATAGGGTCAGACTAG
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  • Fasta :-

    MDPLPHGVGSGGGYPSNGPEAWFYSLPPVTRAVTCITFACTLLSSIELMPARLLILDWEL VSQKLQVWRLLTNVLYIGRFSLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQT LCLDFISLLFFWPTGLHLLGGSLLFAVLYYWSRRESYTPVSIYFLTVQGHQLPFVLLLLH LLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKIFDRLAERLSNRPEIGRRP TSRTGVVSGGSGGGGPGGPGGNSWGGSVRPRPAAGGGSSGTQAFTGRGYRIGSD

    No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India