NCLIV_001380 | ubiquitin carboxyl-terminal hydrolase, related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_001380OTHER0.9999960.0000040.000000
No Results

  • Fasta :-

    >NCLIV_001380 MSSTSSSPPTASMGSPSASSVPPKREHPQENSLGETLGAAKQRTAAPPPSSAAAVSAPQT KQLRRTCPYLGTIKRHLLDFDFEKVCCICLSNQHVYACLVCARYFQGRGKNTYAYMHALQ EQHYVYLNLKDCRVYCLPENYEVKDASLDDIIYNLHPTYSTEDVAQLSTRIIYGKALDGA DYIPGCVGLNNLKRTDFCNAIIQSLCAVIPLRNWLLLLDLSHVQNYDPVLQTLGELMRKI FNARNFKGIVSPHEFLQAVGVASKKKFRIGEQADPLQFFCWLMARVHQSAKHKKVNSNVV NDCFQGEVEVRTTTAEGEATGQPPSVSRIPFLFLTLDLPQAPIFKDSLDRNMIPHIPIFD LLQKFNGEQIQETTPGTLKRYSLWRLPKYLVLHVKRFSKNNFYVEKNPTIVTFPVKHLDL RDYVHEDAPMELNPVTKYDLVANICHQGKPHDGQYKVHVLHAPTNEWFEIEDLRVTQVLP QFVALSESYVQVYQRQDVAPDGSIDQAAVEAALQELQKKEAKSAMVDDDEDIFAADSENE EEEGSETEGTKEEIETKEEPSN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_001380.fa Sequence name : NCLIV_001380 Sequence length : 562 VALUES OF COMPUTED PARAMETERS Coef20 : 4.218 CoefTot : -0.091 ChDiff : -14 ZoneTo : 25 KR : 2 DE : 0 CleavSite : 27 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.947 1.571 0.422 0.499 MesoH : -0.684 0.411 -0.339 0.210 MuHd_075 : 17.769 8.706 4.173 4.254 MuHd_095 : 11.030 10.827 4.163 2.738 MuHd_100 : 8.022 10.493 3.283 2.227 MuHd_105 : 10.478 10.984 2.630 2.293 Hmax_075 : 7.933 1.517 -0.177 1.890 Hmax_095 : 10.200 4.400 0.762 2.730 Hmax_100 : 4.600 5.100 1.094 2.710 Hmax_105 : 5.367 6.767 1.373 3.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8306 0.1694 DFMC : 0.8827 0.1173
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 562 NCLIV_001380 MSSTSSSPPTASMGSPSASSVPPKREHPQENSLGETLGAAKQRTAAPPPSSAAAVSAPQTKQLRRTCPYLGTIKRHLLDF 80 DFEKVCCICLSNQHVYACLVCARYFQGRGKNTYAYMHALQEQHYVYLNLKDCRVYCLPENYEVKDASLDDIIYNLHPTYS 160 TEDVAQLSTRIIYGKALDGADYIPGCVGLNNLKRTDFCNAIIQSLCAVIPLRNWLLLLDLSHVQNYDPVLQTLGELMRKI 240 FNARNFKGIVSPHEFLQAVGVASKKKFRIGEQADPLQFFCWLMARVHQSAKHKKVNSNVVNDCFQGEVEVRTTTAEGEAT 320 GQPPSVSRIPFLFLTLDLPQAPIFKDSLDRNMIPHIPIFDLLQKFNGEQIQETTPGTLKRYSLWRLPKYLVLHVKRFSKN 400 NFYVEKNPTIVTFPVKHLDLRDYVHEDAPMELNPVTKYDLVANICHQGKPHDGQYKVHVLHAPTNEWFEIEDLRVTQVLP 480 QFVALSESYVQVYQRQDVAPDGSIDQAAVEAALQELQKKEAKSAMVDDDEDIFAADSENEEEEGSETEGTKEEIETKEEP 560 SN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_001380 24 ASSVPPK|RE 0.107 . NCLIV_001380 25 SSVPPKR|EH 0.167 . NCLIV_001380 41 ETLGAAK|QR 0.059 . NCLIV_001380 43 LGAAKQR|TA 0.131 . NCLIV_001380 61 VSAPQTK|QL 0.070 . NCLIV_001380 64 PQTKQLR|RT 0.097 . NCLIV_001380 65 QTKQLRR|TC 0.105 . NCLIV_001380 74 PYLGTIK|RH 0.049 . NCLIV_001380 75 YLGTIKR|HL 0.160 . NCLIV_001380 84 LDFDFEK|VC 0.065 . NCLIV_001380 103 ACLVCAR|YF 0.092 . NCLIV_001380 108 ARYFQGR|GK 0.130 . NCLIV_001380 110 YFQGRGK|NT 0.075 . NCLIV_001380 130 YVYLNLK|DC 0.057 . NCLIV_001380 133 LNLKDCR|VY 0.076 . NCLIV_001380 144 PENYEVK|DA 0.077 . NCLIV_001380 170 VAQLSTR|II 0.099 . NCLIV_001380 175 TRIIYGK|AL 0.085 . NCLIV_001380 193 VGLNNLK|RT 0.054 . NCLIV_001380 194 GLNNLKR|TD 0.163 . NCLIV_001380 212 CAVIPLR|NW 0.074 . NCLIV_001380 238 TLGELMR|KI 0.101 . NCLIV_001380 239 LGELMRK|IF 0.069 . NCLIV_001380 244 RKIFNAR|NF 0.098 . NCLIV_001380 247 FNARNFK|GI 0.117 . NCLIV_001380 264 AVGVASK|KK 0.064 . NCLIV_001380 265 VGVASKK|KF 0.109 . NCLIV_001380 266 GVASKKK|FR 0.146 . NCLIV_001380 268 ASKKKFR|IG 0.127 . NCLIV_001380 285 FCWLMAR|VH 0.073 . NCLIV_001380 291 RVHQSAK|HK 0.069 . NCLIV_001380 293 HQSAKHK|KV 0.094 . NCLIV_001380 294 QSAKHKK|VN 0.163 . NCLIV_001380 311 QGEVEVR|TT 0.102 . NCLIV_001380 328 QPPSVSR|IP 0.077 . NCLIV_001380 345 PQAPIFK|DS 0.064 . NCLIV_001380 350 FKDSLDR|NM 0.085 . NCLIV_001380 364 IFDLLQK|FN 0.072 . NCLIV_001380 379 TTPGTLK|RY 0.054 . NCLIV_001380 380 TPGTLKR|YS 0.259 . NCLIV_001380 385 KRYSLWR|LP 0.083 . NCLIV_001380 388 SLWRLPK|YL 0.131 . NCLIV_001380 395 YLVLHVK|RF 0.068 . NCLIV_001380 396 LVLHVKR|FS 0.189 . NCLIV_001380 399 HVKRFSK|NN 0.152 . NCLIV_001380 406 NNFYVEK|NP 0.065 . NCLIV_001380 416 IVTFPVK|HL 0.061 . NCLIV_001380 421 VKHLDLR|DY 0.096 . NCLIV_001380 437 ELNPVTK|YD 0.071 . NCLIV_001380 449 NICHQGK|PH 0.072 . NCLIV_001380 456 PHDGQYK|VH 0.056 . NCLIV_001380 474 FEIEDLR|VT 0.071 . NCLIV_001380 495 YVQVYQR|QD 0.083 . NCLIV_001380 518 ALQELQK|KE 0.058 . NCLIV_001380 519 LQELQKK|EA 0.104 . NCLIV_001380 522 LQKKEAK|SA 0.096 . NCLIV_001380 551 SETEGTK|EE 0.056 . NCLIV_001380 557 KEEIETK|EE 0.057 . ____________________________^_________________

  • Fasta :-

    >NCLIV_001380 ATGTCGTCCACGTCTTCCTCGCCGCCCACAGCGTCGATGGGTAGTCCTTCGGCGTCTTCG GTGCCGCCGAAAAGAGAACACCCGCAGGAAAACTCCCTCGGAGAAACTCTCGGAGCTGCG AAGCAACGCACGGCTGCGCCGCCCCCCTCGTCTGCCGCCGCTGTCTCTGCTCCTCAGACG AAGCAGTTGCGGCGGACGTGTCCGTACTTGGGAACCATCAAGAGACACCTTCTGGACTTT GACTTCGAGAAAGTCTGCTGTATCTGTCTCTCTAATCAACATGTCTACGCATGTCTCGTC TGTGCGCGCTACTTCCAAGGTCGAGGCAAGAACACATATGCCTATATGCATGCGCTCCAG GAACAGCACTATGTGTACCTCAATCTGAAGGACTGCCGGGTGTACTGTCTTCCGGAGAAC TACGAAGTGAAGGATGCGTCTCTGGACGACATCATTTACAATCTCCACCCGACCTACAGC ACCGAGGATGTTGCGCAGTTGTCGACGAGGATCATCTACGGAAAGGCCCTGGACGGCGCA GATTATATCCCCGGATGCGTCGGTCTGAACAACCTGAAACGTACAGACTTTTGCAACGCC ATCATTCAATCCCTTTGCGCGGTCATCCCACTCCGGAACTGGTTGTTGCTCCTCGATCTC TCTCACGTCCAAAACTACGACCCGGTGCTCCAGACGCTCGGCGAGTTGATGCGCAAGATT TTCAACGCGCGCAACTTCAAAGGCATTGTCTCGCCTCACGAGTTCCTACAGGCTGTGGGC GTCGCCAGCAAGAAGAAATTTCGGATTGGAGAGCAGGCGGACCCGCTTCAGTTCTTCTGC TGGCTGATGGCTCGCGTCCATCAGTCAGCCAAGCACAAGAAAGTCAACTCGAATGTCGTA AACGACTGCTTCCAAGGGGAAGTGGAAGTTCGAACGACAACCGCGGAGGGCGAGGCGACG GGGCAGCCGCCTTCGGTTTCGCGGATACCCTTCCTATTCCTCACTCTCGACCTACCCCAA GCTCCTATCTTCAAGGACTCTCTGGACAGGAATATGATTCCGCACATCCCGATTTTCGAT CTCCTTCAGAAGTTCAATGGAGAGCAAATTCAGGAGACGACTCCAGGAACGCTGAAGCGG TACAGTTTGTGGCGGCTACCCAAGTACCTCGTGCTGCATGTGAAACGGTTCTCCAAGAAC AACTTCTACGTCGAGAAGAATCCGACAATTGTCACCTTCCCCGTCAAGCACTTGGATCTC CGAGACTACGTACACGAGGATGCGCCAATGGAGCTCAACCCGGTGACAAAGTACGACCTC GTCGCCAACATCTGCCACCAAGGAAAACCCCACGACGGCCAGTACAAGGTCCACGTCTTG CATGCGCCGACGAACGAGTGGTTCGAAATCGAAGACCTTCGTGTGACGCAGGTTCTGCCT CAGTTCGTGGCGCTCTCCGAGTCGTACGTGCAAGTTTACCAGCGTCAAGATGTCGCGCCG GACGGCTCTATTGATCAGGCTGCAGTCGAGGCAGCCCTTCAGGAACTGCAGAAAAAAGAG GCGAAGAGTGCCATGGTGGACGACGACGAAGACATCTTCGCGGCGGATTCAGAGAATGAA GAGGAGGAAGGGTCTGAGACGGAAGGAACAAAGGAGGAAATAGAGACCAAGGAGGAACCC AGCAACTGA
  • Download Fasta

  • Fasta :-

    MSSTSSSPPTASMGSPSASSVPPKREHPQENSLGETLGAAKQRTAAPPPSSAAAVSAPQT KQLRRTCPYLGTIKRHLLDFDFEKVCCICLSNQHVYACLVCARYFQGRGKNTYAYMHALQ EQHYVYLNLKDCRVYCLPENYEVKDASLDDIIYNLHPTYSTEDVAQLSTRIIYGKALDGA DYIPGCVGLNNLKRTDFCNAIIQSLCAVIPLRNWLLLLDLSHVQNYDPVLQTLGELMRKI FNARNFKGIVSPHEFLQAVGVASKKKFRIGEQADPLQFFCWLMARVHQSAKHKKVNSNVV NDCFQGEVEVRTTTAEGEATGQPPSVSRIPFLFLTLDLPQAPIFKDSLDRNMIPHIPIFD LLQKFNGEQIQETTPGTLKRYSLWRLPKYLVLHVKRFSKNNFYVEKNPTIVTFPVKHLDL RDYVHEDAPMELNPVTKYDLVANICHQGKPHDGQYKVHVLHAPTNEWFEIEDLRVTQVLP QFVALSESYVQVYQRQDVAPDGSIDQAAVEAALQELQKKEAKSAMVDDDEDIFAADSENE EEEGSETEGTKEEIETKEEPSN

  • title: Active Site
  • coordinates: N191,D196,Q454,D472
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India