NCLIV_003830 | conserved hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_003830OTHER1.0000000.0000000.000000
No Results

  • Fasta :-

    >NCLIV_003830 MRQKRQAVSPPGGAESAAGGNIDSERTGRRRKRAGVHLPHDPEASLSEPFLPSTFSSMSP SSTSCSSSSSSSTSSSSSTSSSSSISSSSSSSTSSTPSSSSTSSSSSISSSSSSSSSSSS SSSFSSSSSSSSPSSSSSSSSSSSSSASYSSSSTCHFAASSFSSSAAPLPLSRLASVPGR SGESVILDEYVRVARIYFYSGFCFLPILWFLNTRMFTEARLGRLSLRVHLASRRIGRRGR DIEEAQRRTAKRRRTERHPPASASPGCTTRWSTQSLPLSAADGLGLGTGARGDPREPDRH EDHESEEEQARRLAETDAHTKLKDLRSCEKQKRRLPFANGQRSGLARASRTARWKGTASD VHRYPRQQDS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_003830.fa Sequence name : NCLIV_003830 Sequence length : 370 VALUES OF COMPUTED PARAMETERS Coef20 : 3.297 CoefTot : -0.765 ChDiff : 19 ZoneTo : 14 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.676 1.429 0.193 0.715 MesoH : 0.891 0.471 -0.039 0.224 MuHd_075 : 16.378 12.065 4.812 3.891 MuHd_095 : 3.364 3.698 0.749 2.395 MuHd_100 : 12.901 8.489 1.855 4.291 MuHd_105 : 21.780 13.150 3.874 5.434 Hmax_075 : 5.300 5.300 0.028 3.070 Hmax_095 : -1.312 0.875 -1.350 0.510 Hmax_100 : 1.900 0.700 -1.648 1.870 Hmax_105 : 1.800 6.000 -1.521 2.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9388 0.0612 DFMC : 0.9068 0.0932
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 370 NCLIV_003830 MRQKRQAVSPPGGAESAAGGNIDSERTGRRRKRAGVHLPHDPEASLSEPFLPSTFSSMSPSSTSCSSSSSSSTSSSSSTS 80 SSSSISSSSSSSTSSTPSSSSTSSSSSISSSSSSSSSSSSSSSFSSSSSSSSPSSSSSSSSSSSSSASYSSSSTCHFAAS 160 SFSSSAAPLPLSRLASVPGRSGESVILDEYVRVARIYFYSGFCFLPILWFLNTRMFTEARLGRLSLRVHLASRRIGRRGR 240 DIEEAQRRTAKRRRTERHPPASASPGCTTRWSTQSLPLSAADGLGLGTGARGDPREPDRHEDHESEEEQARRLAETDAHT 320 KLKDLRSCEKQKRRLPFANGQRSGLARASRTARWKGTASDVHRYPRQQDS 400 ....P...........................P............................................... 80 ................................................................................ 160 ...............................................................................P 240 ................................................................................ 320 ................................P................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 4 Name Pos Context Score Pred ____________________________v_________________ NCLIV_003830 2 -----MR|QK 0.102 . NCLIV_003830 4 ---MRQK|RQ 0.059 . NCLIV_003830 5 --MRQKR|QA 0.614 *ProP* NCLIV_003830 26 GNIDSER|TG 0.081 . NCLIV_003830 29 DSERTGR|RR 0.184 . NCLIV_003830 30 SERTGRR|RK 0.158 . NCLIV_003830 31 ERTGRRR|KR 0.109 . NCLIV_003830 32 RTGRRRK|RA 0.395 . NCLIV_003830 33 TGRRRKR|AG 0.605 *ProP* NCLIV_003830 173 APLPLSR|LA 0.092 . NCLIV_003830 180 LASVPGR|SG 0.195 . NCLIV_003830 192 ILDEYVR|VA 0.078 . NCLIV_003830 195 EYVRVAR|IY 0.272 . NCLIV_003830 214 LWFLNTR|MF 0.085 . NCLIV_003830 220 RMFTEAR|LG 0.081 . NCLIV_003830 223 TEARLGR|LS 0.211 . NCLIV_003830 227 LGRLSLR|VH 0.081 . NCLIV_003830 233 RVHLASR|RI 0.098 . NCLIV_003830 234 VHLASRR|IG 0.111 . NCLIV_003830 237 ASRRIGR|RG 0.325 . NCLIV_003830 238 SRRIGRR|GR 0.258 . NCLIV_003830 240 RIGRRGR|DI 0.622 *ProP* NCLIV_003830 247 DIEEAQR|RT 0.072 . NCLIV_003830 248 IEEAQRR|TA 0.140 . NCLIV_003830 251 AQRRTAK|RR 0.139 . NCLIV_003830 252 QRRTAKR|RR 0.170 . NCLIV_003830 253 RRTAKRR|RT 0.238 . NCLIV_003830 254 RTAKRRR|TE 0.133 . NCLIV_003830 257 KRRRTER|HP 0.307 . NCLIV_003830 270 SPGCTTR|WS 0.148 . NCLIV_003830 291 GLGTGAR|GD 0.085 . NCLIV_003830 295 GARGDPR|EP 0.111 . NCLIV_003830 299 DPREPDR|HE 0.102 . NCLIV_003830 311 SEEEQAR|RL 0.089 . NCLIV_003830 312 EEEQARR|LA 0.164 . NCLIV_003830 321 ETDAHTK|LK 0.053 . NCLIV_003830 323 DAHTKLK|DL 0.102 . NCLIV_003830 326 TKLKDLR|SC 0.167 . NCLIV_003830 330 DLRSCEK|QK 0.060 . NCLIV_003830 332 RSCEKQK|RR 0.061 . NCLIV_003830 333 SCEKQKR|RL 0.149 . NCLIV_003830 334 CEKQKRR|LP 0.132 . NCLIV_003830 342 PFANGQR|SG 0.082 . NCLIV_003830 347 QRSGLAR|AS 0.183 . NCLIV_003830 350 GLARASR|TA 0.404 . NCLIV_003830 353 RASRTAR|WK 0.560 *ProP* NCLIV_003830 355 SRTARWK|GT 0.073 . NCLIV_003830 363 TASDVHR|YP 0.151 . NCLIV_003830 366 DVHRYPR|QQ 0.284 . ____________________________^_________________

  • Fasta :-

    >NCLIV_003830 ATGCGGCAGAAGCGGCAGGCGGTCTCCCCTCCAGGGGGGGCTGAGAGCGCTGCCGGAGGA AACATTGACAGCGAGAGAACAGGGAGAAGAAGAAAACGTGCAGGCGTACATCTGCCCCAC GATCCAGAGGCGAGTCTTTCTGAGCCGTTCCTCCCTTCTACTTTTTCATCCATGTCTCCA TCCTCTACTTCGTGTTCGTCCTCATCCTCTTCCTCCACTTCCTCATCTTCCTCCACTTCC TCATCTTCCTCCATTTCCTCATCCTCTTCTTCCTCCACTTCCTCCACTCCCTCATCTTCC TCCACTTCCTCATCTTCCTCCATTTCCTCATCCTCCTCTTCCTCTTCCTCTTCTTCCTCC TCTTCTTCCTTCTCTTCTTCCTCCTCTTCCTCTTCTCCCTCCTCTTCCTCTTCTTCCTCC TCTTCCTCTTCTTCTTCCGCTTCTTATTCCTCTTCTTCCACCTGTCACTTTGCCGCCTCC TCCTTCTCTTCTTCCGCTGCCCCATTGCCTTTATCTCGCCTCGCTTCGGTGCCAGGTAGG AGCGGGGAGTCTGTCATTCTCGACGAGTATGTCAGGGTTGCGCGGATCTATTTCTATTCA GGTTTTTGCTTCCTCCCGATCCTGTGGTTTCTGAATACCCGCATGTTCACGGAAGCCCGC TTAGGGCGCCTGTCTCTTCGAGTGCACTTGGCGAGTCGGCGGATAGGCCGACGAGGCAGA GACATCGAGGAGGCACAGAGGCGCACGGCAAAGCGCAGGAGAACCGAGCGACACCCCCCG GCGTCAGCGTCTCCAGGCTGCACGACGAGGTGGTCCACTCAGTCCCTCCCGCTTTCTGCC GCCGACGGGCTGGGTCTGGGCACGGGAGCCCGGGGAGACCCTCGTGAGCCGGATCGCCAC GAAGATCACGAGAGCGAAGAGGAACAAGCAAGGCGACTAGCAGAAACAGACGCCCACACG AAGCTTAAGGACCTCCGCTCGTGTGAGAAGCAGAAAAGACGGCTGCCGTTTGCGAATGGC CAACGGTCTGGGCTTGCCCGAGCAAGCCGGACTGCGAGGTGGAAAGGAACGGCAAGTGAC GTTCACAGATATCCAAGGCAACAGGACAGTTGA
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  • Fasta :-

    MRQKRQAVSPPGGAESAAGGNIDSERTGRRRKRAGVHLPHDPEASLSEPFLPSTFSSMSP SSTSCSSSSSSSTSSSSSTSSSSSISSSSSSSTSSTPSSSSTSSSSSISSSSSSSSSSSS SSSFSSSSSSSSPSSSSSSSSSSSSSASYSSSSTCHFAASSFSSSAAPLPLSRLASVPGR SGESVILDEYVRVARIYFYSGFCFLPILWFLNTRMFTEARLGRLSLRVHLASRRIGRRGR DIEEAQRRTAKRRRTERHPPASASPGCTTRWSTQSLPLSAADGLGLGTGARGDPREPDRH EDHESEEEQARRLAETDAHTKLKDLRSCEKQKRRLPFANGQRSGLARASRTARWKGTASD VHRYPRQQDS

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_00383074 SSSSTSSSSS0.99unspNCLIV_00383074 SSSSTSSSSS0.99unspNCLIV_00383074 SSSSTSSSSS0.99unspNCLIV_00383078 SSSSSSTSSS0.996unspNCLIV_00383084 SSSSSSISSS0.994unspNCLIV_00383092 SSSSSSTSST0.996unspNCLIV_00383098 SSSTPSSSST0.991unspNCLIV_003830101 SPSSSSTSSS0.992unspNCLIV_003830107 SSSSSSISSS0.994unspNCLIV_003830113 SSSSSSSSSS0.991unspNCLIV_003830114 SSSSSSSSSS0.99unspNCLIV_003830115 SSSSSSSSSS0.99unspNCLIV_003830116 SSSSSSSSSS0.99unspNCLIV_003830117 SSSSSSSSSS0.99unspNCLIV_003830118 SSSSSSSSSS0.99unspNCLIV_003830119 SSSSSSSSSS0.992unspNCLIV_003830132 SSSSSSPSSS0.996unspNCLIV_003830135 SSSPSSSSSS0.992unspNCLIV_003830139 SSSSSSSSSS0.99unspNCLIV_003830140 SSSSSSSSSS0.99unspNCLIV_003830141 SSSSSSSSSS0.99unspNCLIV_003830148 SSSSASYSSS0.991unspNCLIV_003830225 SLGRLSLRVH0.991unspNCLIV_003830255 TKRRRTERHP0.991unspNCLIV_003830305 SEDHESEEEQ0.991unspNCLIV_00383059 SFSSMSPSST0.996unspNCLIV_00383072 SSSSSSTSSS0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India