NCLIV_005190 | putative transcription elongation factor FACT 140 kDa

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_005190OTHER0.9980610.0014660.000472
No Results

  • Fasta :-

    >NCLIV_005190 MEQKEMYSFTFDLLNYVISLLKPGASFSSIYADARAYVEERKPGLVDHLLKMVGHCMGIE YRSNSLVLNAKNPKSVVERGMVFNISVGFSHLTTSKGKNYAIWLADTVLLPTEEGAAPVV LTDGTSKALRHVSYELEDAEEELAEKSKAADVKKPSTKEESKPKGGEGKDAQKKSAKKES SKVKEKEKETRKTATTGGAISATILNNAESVILKDRLRRRTGSQAATAQQEAEERDERQR QLRKKKSEQLRLRFDNEKDGAGLERKKKEGKKMEDIKCFSGPEGFPRDLKANKLYVDFKS ESLLVPIHGSHLPFHLSTVKNVTCSEAQGDSSGSSLSVSGKNRSPFFVLRINFQVPGSQT LTLKGEENPLPDLSGKPDTVFIKELMFKSEDGRHLQTIFRTIKEQLKRVKQKALEDDVAG EMMEQDKLILNRTGRRVLLKDLMIRPNIAPGMRKLIGSLEAHTNGLRFTVNTRGQIDQVD ITYSNIKHAMFQPCERELIVLIHFHLKSAIMVGKKRTQDVQFYTEAGTQTDDLDNRRNRS FHDPDETQDEMRERELKRKLNNEFKRFVQQVEDIAKVEFDLPYRELRFTGVPMKSNVEIL PTANCLVHLIEWPPFVLPLEDIELVSFERVAHGLRNFDVIFVFQDYTKPVKRIDLVPIEF LDNLKRWLNELEIVWYEGKQNLNWNAILKQIRDDPHGFVEAGGFEMFLGDDSPSGEEGDT DEDDDDEEYAESGSESEYNEGSGEEEEDGGEGSSEEDSSDSDDDESLADESDEDEEYNDV SSDEEEGLSWDELEERAKKGKRESCTKGDML
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_005190.fa Sequence name : NCLIV_005190 Sequence length : 811 VALUES OF COMPUTED PARAMETERS Coef20 : 3.807 CoefTot : 0.000 ChDiff : -36 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.012 1.459 0.020 0.554 MesoH : -0.495 0.434 -0.408 0.239 MuHd_075 : 6.979 7.664 1.704 0.528 MuHd_095 : 22.218 18.024 6.094 5.160 MuHd_100 : 23.147 14.896 6.450 4.066 MuHd_105 : 24.158 13.736 6.523 3.254 Hmax_075 : 4.900 11.900 -0.549 3.640 Hmax_095 : 9.975 14.700 0.854 5.031 Hmax_100 : 8.600 9.800 0.459 4.160 Hmax_105 : 8.900 12.000 -0.180 4.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9511 0.0489 DFMC : 0.9497 0.0503
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 811 NCLIV_005190 MEQKEMYSFTFDLLNYVISLLKPGASFSSIYADARAYVEERKPGLVDHLLKMVGHCMGIEYRSNSLVLNAKNPKSVVERG 80 MVFNISVGFSHLTTSKGKNYAIWLADTVLLPTEEGAAPVVLTDGTSKALRHVSYELEDAEEELAEKSKAADVKKPSTKEE 160 SKPKGGEGKDAQKKSAKKESSKVKEKEKETRKTATTGGAISATILNNAESVILKDRLRRRTGSQAATAQQEAEERDERQR 240 QLRKKKSEQLRLRFDNEKDGAGLERKKKEGKKMEDIKCFSGPEGFPRDLKANKLYVDFKSESLLVPIHGSHLPFHLSTVK 320 NVTCSEAQGDSSGSSLSVSGKNRSPFFVLRINFQVPGSQTLTLKGEENPLPDLSGKPDTVFIKELMFKSEDGRHLQTIFR 400 TIKEQLKRVKQKALEDDVAGEMMEQDKLILNRTGRRVLLKDLMIRPNIAPGMRKLIGSLEAHTNGLRFTVNTRGQIDQVD 480 ITYSNIKHAMFQPCERELIVLIHFHLKSAIMVGKKRTQDVQFYTEAGTQTDDLDNRRNRSFHDPDETQDEMRERELKRKL 560 NNEFKRFVQQVEDIAKVEFDLPYRELRFTGVPMKSNVEILPTANCLVHLIEWPPFVLPLEDIELVSFERVAHGLRNFDVI 640 FVFQDYTKPVKRIDLVPIEFLDNLKRWLNELEIVWYEGKQNLNWNAILKQIRDDPHGFVEAGGFEMFLGDDSPSGEEGDT 720 DEDDDDEEYAESGSESEYNEGSGEEEEDGGEGSSEEDSSDSDDDESLADESDEDEEYNDVSSDEEEGLSWDELEERAKKG 800 KRESCTKGDML 880 ................................................................................ 80 ................................................................................ 160 ..........................................................P..................... 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..........................................................P..................... 560 .....P.......................................................................... 640 ................................................................................ 720 ................................................................................ 800 ........... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 3 Name Pos Context Score Pred ____________________________v_________________ NCLIV_005190 4 ---MEQK|EM 0.058 . NCLIV_005190 22 YVISLLK|PG 0.050 . NCLIV_005190 35 SIYADAR|AY 0.091 . NCLIV_005190 41 RAYVEER|KP 0.090 . NCLIV_005190 42 AYVEERK|PG 0.062 . NCLIV_005190 51 LVDHLLK|MV 0.096 . NCLIV_005190 62 CMGIEYR|SN 0.155 . NCLIV_005190 71 SLVLNAK|NP 0.060 . NCLIV_005190 74 LNAKNPK|SV 0.119 . NCLIV_005190 79 PKSVVER|GM 0.115 . NCLIV_005190 96 SHLTTSK|GK 0.062 . NCLIV_005190 98 LTTSKGK|NY 0.063 . NCLIV_005190 127 LTDGTSK|AL 0.061 . NCLIV_005190 130 GTSKALR|HV 0.209 . NCLIV_005190 146 EEELAEK|SK 0.063 . NCLIV_005190 148 ELAEKSK|AA 0.089 . NCLIV_005190 153 SKAADVK|KP 0.089 . NCLIV_005190 154 KAADVKK|PS 0.150 . NCLIV_005190 158 VKKPSTK|EE 0.069 . NCLIV_005190 162 STKEESK|PK 0.074 . NCLIV_005190 164 KEESKPK|GG 0.080 . NCLIV_005190 169 PKGGEGK|DA 0.088 . NCLIV_005190 173 EGKDAQK|KS 0.061 . NCLIV_005190 174 GKDAQKK|SA 0.192 . NCLIV_005190 177 AQKKSAK|KE 0.072 . NCLIV_005190 178 QKKSAKK|ES 0.115 . NCLIV_005190 182 AKKESSK|VK 0.070 . NCLIV_005190 184 KESSKVK|EK 0.090 . NCLIV_005190 186 SSKVKEK|EK 0.073 . NCLIV_005190 188 KVKEKEK|ET 0.069 . NCLIV_005190 191 EKEKETR|KT 0.107 . NCLIV_005190 192 KEKETRK|TA 0.109 . NCLIV_005190 214 AESVILK|DR 0.068 . NCLIV_005190 216 SVILKDR|LR 0.082 . NCLIV_005190 218 ILKDRLR|RR 0.077 . NCLIV_005190 219 LKDRLRR|RT 0.514 *ProP* NCLIV_005190 220 KDRLRRR|TG 0.174 . NCLIV_005190 235 QQEAEER|DE 0.087 . NCLIV_005190 238 AEERDER|QR 0.113 . NCLIV_005190 240 ERDERQR|QL 0.100 . NCLIV_005190 243 ERQRQLR|KK 0.283 . NCLIV_005190 244 RQRQLRK|KK 0.095 . NCLIV_005190 245 QRQLRKK|KS 0.153 . NCLIV_005190 246 RQLRKKK|SE 0.334 . NCLIV_005190 251 KKSEQLR|LR 0.128 . NCLIV_005190 253 SEQLRLR|FD 0.102 . NCLIV_005190 258 LRFDNEK|DG 0.069 . NCLIV_005190 265 DGAGLER|KK 0.099 . NCLIV_005190 266 GAGLERK|KK 0.086 . NCLIV_005190 267 AGLERKK|KE 0.096 . NCLIV_005190 268 GLERKKK|EG 0.391 . NCLIV_005190 271 RKKKEGK|KM 0.074 . NCLIV_005190 272 KKKEGKK|ME 0.108 . NCLIV_005190 277 KKMEDIK|CF 0.076 . NCLIV_005190 287 GPEGFPR|DL 0.142 . NCLIV_005190 290 GFPRDLK|AN 0.099 . NCLIV_005190 293 RDLKANK|LY 0.057 . NCLIV_005190 299 KLYVDFK|SE 0.082 . NCLIV_005190 320 FHLSTVK|NV 0.072 . NCLIV_005190 341 SLSVSGK|NR 0.079 . NCLIV_005190 343 SVSGKNR|SP 0.187 . NCLIV_005190 350 SPFFVLR|IN 0.132 . NCLIV_005190 364 SQTLTLK|GE 0.068 . NCLIV_005190 376 LPDLSGK|PD 0.066 . NCLIV_005190 383 PDTVFIK|EL 0.061 . NCLIV_005190 388 IKELMFK|SE 0.077 . NCLIV_005190 393 FKSEDGR|HL 0.151 . NCLIV_005190 400 HLQTIFR|TI 0.105 . NCLIV_005190 403 TIFRTIK|EQ 0.103 . NCLIV_005190 407 TIKEQLK|RV 0.068 . NCLIV_005190 408 IKEQLKR|VK 0.173 . NCLIV_005190 410 EQLKRVK|QK 0.060 . NCLIV_005190 412 LKRVKQK|AL 0.116 . NCLIV_005190 427 EMMEQDK|LI 0.057 . NCLIV_005190 432 DKLILNR|TG 0.076 . NCLIV_005190 435 ILNRTGR|RV 0.304 . NCLIV_005190 436 LNRTGRR|VL 0.108 . NCLIV_005190 440 GRRVLLK|DL 0.090 . NCLIV_005190 445 LKDLMIR|PN 0.080 . NCLIV_005190 453 NIAPGMR|KL 0.101 . NCLIV_005190 454 IAPGMRK|LI 0.099 . NCLIV_005190 467 AHTNGLR|FT 0.074 . NCLIV_005190 473 RFTVNTR|GQ 0.090 . NCLIV_005190 487 ITYSNIK|HA 0.067 . NCLIV_005190 496 MFQPCER|EL 0.087 . NCLIV_005190 507 LIHFHLK|SA 0.107 . NCLIV_005190 514 SAIMVGK|KR 0.067 . NCLIV_005190 515 AIMVGKK|RT 0.103 . NCLIV_005190 516 IMVGKKR|TQ 0.230 . NCLIV_005190 536 TDDLDNR|RN 0.067 . NCLIV_005190 537 DDLDNRR|NR 0.095 . NCLIV_005190 539 LDNRRNR|SF 0.546 *ProP* NCLIV_005190 552 ETQDEMR|ER 0.085 . NCLIV_005190 554 QDEMRER|EL 0.107 . NCLIV_005190 557 MRERELK|RK 0.114 . NCLIV_005190 558 RERELKR|KL 0.219 . NCLIV_005190 559 ERELKRK|LN 0.083 . NCLIV_005190 565 KLNNEFK|RF 0.069 . NCLIV_005190 566 LNNEFKR|FV 0.640 *ProP* NCLIV_005190 576 QVEDIAK|VE 0.057 . NCLIV_005190 584 EFDLPYR|EL 0.068 . NCLIV_005190 587 LPYRELR|FT 0.360 . NCLIV_005190 594 FTGVPMK|SN 0.092 . NCLIV_005190 629 ELVSFER|VA 0.087 . NCLIV_005190 635 RVAHGLR|NF 0.083 . NCLIV_005190 648 VFQDYTK|PV 0.068 . NCLIV_005190 651 DYTKPVK|RI 0.059 . NCLIV_005190 652 YTKPVKR|ID 0.120 . NCLIV_005190 665 EFLDNLK|RW 0.053 . NCLIV_005190 666 FLDNLKR|WL 0.156 . NCLIV_005190 679 IVWYEGK|QN 0.057 . NCLIV_005190 689 NWNAILK|QI 0.081 . NCLIV_005190 692 AILKQIR|DD 0.100 . NCLIV_005190 796 WDELEER|AK 0.081 . NCLIV_005190 798 ELEERAK|KG 0.059 . NCLIV_005190 799 LEERAKK|GK 0.236 . NCLIV_005190 801 ERAKKGK|RE 0.072 . NCLIV_005190 802 RAKKGKR|ES 0.275 . NCLIV_005190 807 KRESCTK|GD 0.065 . ____________________________^_________________

  • Fasta :-

    >NCLIV_005190 ATGGAGCAGAAGGAGATGTACTCCTTCACCTTCGACTTGCTCAACTACGTGATTTCCCTG CTGAAGCCTGGAGCCTCGTTCAGTAGCATTTACGCTGACGCGCGCGCCTACGTGGAAGAA CGGAAGCCTGGCCTCGTGGACCACCTCCTCAAGATGGTTGGACACTGCATGGGGATTGAG TACAGGTCGAACTCGCTCGTCCTTAACGCGAAGAACCCAAAATCCGTCGTAGAGAGAGGC ATGGTCTTCAACATCTCTGTCGGTTTCTCGCACCTCACAACTTCAAAGGGGAAGAACTAC GCGATCTGGCTAGCTGACACCGTTCTCCTTCCGACGGAAGAGGGCGCAGCTCCTGTTGTG TTGACGGACGGGACGTCGAAGGCACTCCGCCACGTCTCGTACGAACTGGAGGATGCAGAG GAGGAGCTTGCGGAGAAATCGAAGGCGGCCGACGTGAAGAAGCCGAGCACTAAGGAGGAG TCAAAGCCGAAGGGCGGCGAGGGCAAGGACGCACAGAAAAAGAGTGCGAAGAAGGAGAGC TCGAAAGTGAAAGAGAAAGAGAAAGAAACGAGAAAAACAGCGACAACTGGTGGCGCCATT TCCGCTACGATCCTCAACAATGCCGAATCCGTCATTCTTAAAGACAGACTCCGGCGGCGG ACTGGGTCTCAAGCTGCGACTGCGCAGCAGGAGGCCGAAGAGAGAGACGAGCGACAGAGA CAGCTGAGGAAGAAGAAGTCTGAGCAACTGCGGCTGCGCTTCGACAACGAAAAGGATGGC GCGGGCCTGGAGAGGAAGAAGAAAGAAGGGAAAAAAATGGAAGACATCAAGTGTTTCTCG GGCCCTGAAGGTTTCCCCCGGGATCTCAAAGCAAACAAACTGTATGTGGACTTCAAGTCC GAGTCGCTTTTGGTTCCTATCCACGGGTCTCACCTCCCTTTCCATTTGTCGACCGTGAAG AACGTGACGTGCAGCGAGGCACAGGGCGACTCGTCGGGGAGTTCCTTGTCGGTTTCCGGC AAGAATCGGTCGCCGTTCTTCGTGCTGCGAATTAACTTCCAAGTGCCTGGGAGTCAAACG CTGACGCTGAAAGGCGAAGAGAACCCCCTGCCGGACCTCTCCGGAAAGCCAGACACCGTT TTCATCAAGGAACTGATGTTCAAAAGCGAAGACGGCAGGCACCTGCAAACGATCTTTAGG ACGATCAAAGAGCAGCTGAAGCGGGTGAAGCAGAAGGCTCTGGAGGACGATGTTGCGGGG GAGATGATGGAGCAAGACAAGTTGATTCTCAATCGCACTGGGCGGCGCGTCCTGTTGAAA GATTTGATGATTCGCCCAAACATCGCCCCCGGGATGCGCAAGCTCATCGGTTCCCTCGAG GCCCACACCAACGGCCTTCGATTCACTGTCAACACTCGCGGGCAAATTGACCAGGTCGAC ATCACGTATAGCAACATCAAACACGCCATGTTCCAGCCTTGCGAACGCGAGCTCATTGTC CTCATCCACTTCCACCTCAAGTCTGCGATCATGGTGGGCAAGAAACGTACGCAGGACGTT CAGTTCTACACAGAGGCGGGCACACAAACGGACGACCTTGACAATCGCCGGAATCGATCT TTCCACGACCCAGATGAGACGCAGGACGAGATGCGCGAGAGAGAACTCAAGAGGAAATTG AACAACGAATTCAAGCGCTTTGTCCAGCAGGTAGAAGACATCGCAAAGGTTGAGTTCGAT CTGCCTTACAGAGAGCTCCGCTTCACTGGTGTGCCGATGAAGAGCAACGTGGAAATCCTC CCGACTGCAAACTGCCTCGTCCACTTGATCGAATGGCCGCCGTTCGTGCTTCCCCTCGAA GACATCGAACTCGTCAGTTTCGAGCGCGTCGCCCACGGTCTGCGGAACTTCGACGTCATC TTCGTCTTCCAGGACTACACAAAGCCAGTTAAGCGGATTGACTTGGTTCCGATTGAGTTC CTGGACAACTTGAAGAGGTGGTTAAACGAACTGGAGATTGTCTGGTACGAGGGCAAACAG AACTTGAACTGGAATGCGATTTTGAAGCAAATCCGCGATGATCCGCACGGCTTCGTCGAG GCGGGAGGCTTCGAAATGTTCCTCGGAGACGACAGTCCCTCTGGGGAAGAGGGCGACACC GACGAAGACGATGACGACGAGGAATACGCCGAATCGGGCAGCGAGAGTGAATACAATGAA GGGAGCGGAGAGGAAGAGGAAGACGGGGGGGAGGGATCCTCGGAAGAAGACTCGAGCGAC AGCGACGACGATGAGTCTCTTGCAGACGAAAGCGACGAAGATGAAGAATACAACGACGTC TCGTCAGATGAAGAAGAAGGCCTCAGTTGGGATGAACTGGAAGAACGCGCAAAGAAGGGT AAACGAGAGTCCTGCACAAAGGGGGACATGCTGTAA
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  • Fasta :-

    MEQKEMYSFTFDLLNYVISLLKPGASFSSIYADARAYVEERKPGLVDHLLKMVGHCMGIE YRSNSLVLNAKNPKSVVERGMVFNISVGFSHLTTSKGKNYAIWLADTVLLPTEEGAAPVV LTDGTSKALRHVSYELEDAEEELAEKSKAADVKKPSTKEESKPKGGEGKDAQKKSAKKES SKVKEKEKETRKTATTGGAISATILNNAESVILKDRLRRRTGSQAATAQQEAEERDERQR QLRKKKSEQLRLRFDNEKDGAGLERKKKEGKKMEDIKCFSGPEGFPRDLKANKLYVDFKS ESLLVPIHGSHLPFHLSTVKNVTCSEAQGDSSGSSLSVSGKNRSPFFVLRINFQVPGSQT LTLKGEENPLPDLSGKPDTVFIKELMFKSEDGRHLQTIFRTIKEQLKRVKQKALEDDVAG EMMEQDKLILNRTGRRVLLKDLMIRPNIAPGMRKLIGSLEAHTNGLRFTVNTRGQIDQVD ITYSNIKHAMFQPCERELIVLIHFHLKSAIMVGKKRTQDVQFYTEAGTQTDDLDNRRNRS FHDPDETQDEMRERELKRKLNNEFKRFVQQVEDIAKVEFDLPYRELRFTGVPMKSNVEIL PTANCLVHLIEWPPFVLPLEDIELVSFERVAHGLRNFDVIFVFQDYTKPVKRIDLVPIEF LDNLKRWLNELEIVWYEGKQNLNWNAILKQIRDDPHGFVEAGGFEMFLGDDSPSGEEGDT DEDDDDEEYAESGSESEYNEGSGEEEEDGGEGSSEEDSSDSDDDESLADESDEDEEYNDV SSDEEEGLSWDELEERAKKGKRESCTKGDML

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_005190712 SLGDDSPSGE0.991unspNCLIV_005190712 SLGDDSPSGE0.991unspNCLIV_005190712 SLGDDSPSGE0.991unspNCLIV_005190714 SDDSPSGEEG0.998unspNCLIV_005190742 SYNEGSGEEE0.994unspNCLIV_005190754 SGEGSSEEDS0.997unspNCLIV_005190759 SEEDSSDSDD0.997unspNCLIV_005190761 SDSSDSDDDE0.997unspNCLIV_005190766 SDDDESLADE0.991unspNCLIV_005190771 SLADESDEDE0.997unspNCLIV_005190782 SNDVSSDEEE0.996unspNCLIV_005190789 SEEGLSWDEL0.994unspNCLIV_005190804 SGKRESCTKG0.994unspNCLIV_005190156 SVKKPSTKEE0.998unspNCLIV_005190540 SRRNRSFHDP0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India