NCLIV_005900 | translation INITIATION FACTOR 3 SUBUNIT 9-like protein, related

_IDPredictionOTHERSPmTPCS_Position
NCLIV_005900OTHER0.9997970.0000600.000143
No Results

  • Fasta :-

    >NCLIV_005900 MVRIEKDDLPAEEQDLLEFLSEDSDEGEDDDPEQAEEKLKEKLSQMEPLLQMDYSFPSTI VLVGVPKVGKDKHEKLRLVLDKKMVEELSKKGAESVNEGLTISMPVNEETGMTKGFCFVT FSNQFNAQHAAHHLNGWALDAKHTFRAALLDDFDEIVGRGANYRPPIKLLGFTRENFRWW LLDARGREQFVIRYADETEIYWHDPIERDCSVLVYNGHRERADGKRVWTDFRVQWSPQGS FLATFHRPGIALWAGDQFEKKVRFEHKDVKQIDFSPNETYVITWDGSPAQLRNEKAVRIW KVMTGELLRQFPTPAHSPRGGEYPHFLFSHDDRYVARMGEKELCVYQMECDEEPEAADGE KGEDKGRKGQDRCAVRLLRDPRDGKLSSLKYPLEKFEWSPTENIISVWIKGSEDAPGRLL LVEIPSRRELSSKNVYNVKGASMHWQSKGDFLCLRTVAFKKTGKKGKKEFTQLEIFRMRE KDIPVDNVQLNDVAVQLHWEEGYSKRFALVVHDEQTSNQALRFYRVCDASEDGKRDTTLI YSFDISGYMNYMQWSPFGSYFILASLGLDGTLLFCCLNDQDTVQVLHMDEHFMVNEVRWS ACGRYLSTAVVLPMLPSSNTASFRLGSNTGYKIWTFQGKLQYKCQKDQFYQFLWRPHPPS LLKKEKIEEIKKKMKDYSKRYEAEDEKLRLEQRSAFIRQRKEEMDEFTRVLDGLNQWKVD HDMYDEWQLAYETFDAQFDWEDKEEVIEEELEVKEEIIT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_005900.fa Sequence name : NCLIV_005900 Sequence length : 759 VALUES OF COMPUTED PARAMETERS Coef20 : 3.176 CoefTot : 0.135 ChDiff : -27 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.618 1.994 0.427 0.672 MesoH : -0.074 0.449 -0.248 0.277 MuHd_075 : 21.708 7.474 3.860 2.555 MuHd_095 : 25.252 17.361 5.680 6.117 MuHd_100 : 16.711 13.179 3.759 4.440 MuHd_105 : 3.271 4.249 1.102 1.641 Hmax_075 : -11.375 4.025 -4.700 1.243 Hmax_095 : -8.925 6.125 -4.025 2.467 Hmax_100 : -6.200 6.600 -3.299 2.280 Hmax_105 : -10.600 1.517 -4.562 1.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9918 0.0082 DFMC : 0.9923 0.0077
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 759 NCLIV_005900 MVRIEKDDLPAEEQDLLEFLSEDSDEGEDDDPEQAEEKLKEKLSQMEPLLQMDYSFPSTIVLVGVPKVGKDKHEKLRLVL 80 DKKMVEELSKKGAESVNEGLTISMPVNEETGMTKGFCFVTFSNQFNAQHAAHHLNGWALDAKHTFRAALLDDFDEIVGRG 160 ANYRPPIKLLGFTRENFRWWLLDARGREQFVIRYADETEIYWHDPIERDCSVLVYNGHRERADGKRVWTDFRVQWSPQGS 240 FLATFHRPGIALWAGDQFEKKVRFEHKDVKQIDFSPNETYVITWDGSPAQLRNEKAVRIWKVMTGELLRQFPTPAHSPRG 320 GEYPHFLFSHDDRYVARMGEKELCVYQMECDEEPEAADGEKGEDKGRKGQDRCAVRLLRDPRDGKLSSLKYPLEKFEWSP 400 TENIISVWIKGSEDAPGRLLLVEIPSRRELSSKNVYNVKGASMHWQSKGDFLCLRTVAFKKTGKKGKKEFTQLEIFRMRE 480 KDIPVDNVQLNDVAVQLHWEEGYSKRFALVVHDEQTSNQALRFYRVCDASEDGKRDTTLIYSFDISGYMNYMQWSPFGSY 560 FILASLGLDGTLLFCCLNDQDTVQVLHMDEHFMVNEVRWSACGRYLSTAVVLPMLPSSNTASFRLGSNTGYKIWTFQGKL 640 QYKCQKDQFYQFLWRPHPPSLLKKEKIEEIKKKMKDYSKRYEAEDEKLRLEQRSAFIRQRKEEMDEFTRVLDGLNQWKVD 720 HDMYDEWQLAYETFDAQFDWEDKEEVIEEELEVKEEIIT 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ....................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_005900 3 ----MVR|IE 0.084 . NCLIV_005900 6 -MVRIEK|DD 0.141 . NCLIV_005900 38 PEQAEEK|LK 0.061 . NCLIV_005900 40 QAEEKLK|EK 0.060 . NCLIV_005900 42 EEKLKEK|LS 0.059 . NCLIV_005900 67 VLVGVPK|VG 0.058 . NCLIV_005900 70 GVPKVGK|DK 0.078 . NCLIV_005900 72 PKVGKDK|HE 0.058 . NCLIV_005900 75 GKDKHEK|LR 0.058 . NCLIV_005900 77 DKHEKLR|LV 0.138 . NCLIV_005900 82 LRLVLDK|KM 0.065 . NCLIV_005900 83 RLVLDKK|MV 0.112 . NCLIV_005900 90 MVEELSK|KG 0.058 . NCLIV_005900 91 VEELSKK|GA 0.124 . NCLIV_005900 114 EETGMTK|GF 0.062 . NCLIV_005900 142 GWALDAK|HT 0.070 . NCLIV_005900 146 DAKHTFR|AA 0.088 . NCLIV_005900 159 FDEIVGR|GA 0.099 . NCLIV_005900 164 GRGANYR|PP 0.105 . NCLIV_005900 168 NYRPPIK|LL 0.065 . NCLIV_005900 174 KLLGFTR|EN 0.078 . NCLIV_005900 178 FTRENFR|WW 0.069 . NCLIV_005900 185 WWLLDAR|GR 0.079 . NCLIV_005900 187 LLDARGR|EQ 0.082 . NCLIV_005900 193 REQFVIR|YA 0.165 . NCLIV_005900 208 WHDPIER|DC 0.094 . NCLIV_005900 219 LVYNGHR|ER 0.077 . NCLIV_005900 221 YNGHRER|AD 0.110 . NCLIV_005900 225 RERADGK|RV 0.082 . NCLIV_005900 226 ERADGKR|VW 0.249 . NCLIV_005900 232 RVWTDFR|VQ 0.073 . NCLIV_005900 247 FLATFHR|PG 0.086 . NCLIV_005900 260 AGDQFEK|KV 0.067 . NCLIV_005900 261 GDQFEKK|VR 0.091 . NCLIV_005900 263 QFEKKVR|FE 0.112 . NCLIV_005900 267 KVRFEHK|DV 0.148 . NCLIV_005900 270 FEHKDVK|QI 0.072 . NCLIV_005900 292 GSPAQLR|NE 0.095 . NCLIV_005900 295 AQLRNEK|AV 0.147 . NCLIV_005900 298 RNEKAVR|IW 0.091 . NCLIV_005900 301 KAVRIWK|VM 0.111 . NCLIV_005900 309 MTGELLR|QF 0.071 . NCLIV_005900 319 TPAHSPR|GG 0.147 . NCLIV_005900 333 LFSHDDR|YV 0.199 . NCLIV_005900 337 DDRYVAR|MG 0.146 . NCLIV_005900 341 VARMGEK|EL 0.064 . NCLIV_005900 361 EAADGEK|GE 0.077 . NCLIV_005900 365 GEKGEDK|GR 0.065 . NCLIV_005900 367 KGEDKGR|KG 0.073 . NCLIV_005900 368 GEDKGRK|GQ 0.088 . NCLIV_005900 372 GRKGQDR|CA 0.140 . NCLIV_005900 376 QDRCAVR|LL 0.091 . NCLIV_005900 379 CAVRLLR|DP 0.257 . NCLIV_005900 382 RLLRDPR|DG 0.169 . NCLIV_005900 385 RDPRDGK|LS 0.104 . NCLIV_005900 390 GKLSSLK|YP 0.065 . NCLIV_005900 395 LKYPLEK|FE 0.061 . NCLIV_005900 410 IISVWIK|GS 0.103 . NCLIV_005900 418 SEDAPGR|LL 0.084 . NCLIV_005900 427 LVEIPSR|RE 0.065 . NCLIV_005900 428 VEIPSRR|EL 0.127 . NCLIV_005900 433 RRELSSK|NV 0.096 . NCLIV_005900 439 KNVYNVK|GA 0.078 . NCLIV_005900 448 SMHWQSK|GD 0.079 . NCLIV_005900 455 GDFLCLR|TV 0.097 . NCLIV_005900 460 LRTVAFK|KT 0.086 . NCLIV_005900 461 RTVAFKK|TG 0.098 . NCLIV_005900 464 AFKKTGK|KG 0.063 . NCLIV_005900 465 FKKTGKK|GK 0.086 . NCLIV_005900 467 KTGKKGK|KE 0.085 . NCLIV_005900 468 TGKKGKK|EF 0.114 . NCLIV_005900 477 TQLEIFR|MR 0.096 . NCLIV_005900 479 LEIFRMR|EK 0.092 . NCLIV_005900 481 IFRMREK|DI 0.071 . NCLIV_005900 505 WEEGYSK|RF 0.060 . NCLIV_005900 506 EEGYSKR|FA 0.286 . NCLIV_005900 522 TSNQALR|FY 0.146 . NCLIV_005900 525 QALRFYR|VC 0.387 . NCLIV_005900 534 DASEDGK|RD 0.063 . NCLIV_005900 535 ASEDGKR|DT 0.172 . NCLIV_005900 598 FMVNEVR|WS 0.088 . NCLIV_005900 604 RWSACGR|YL 0.188 . NCLIV_005900 624 SNTASFR|LG 0.088 . NCLIV_005900 632 GSNTGYK|IW 0.071 . NCLIV_005900 639 IWTFQGK|LQ 0.070 . NCLIV_005900 643 QGKLQYK|CQ 0.071 . NCLIV_005900 646 LQYKCQK|DQ 0.079 . NCLIV_005900 655 FYQFLWR|PH 0.075 . NCLIV_005900 663 HPPSLLK|KE 0.057 . NCLIV_005900 664 PPSLLKK|EK 0.132 . NCLIV_005900 666 SLLKKEK|IE 0.077 . NCLIV_005900 671 EKIEEIK|KK 0.058 . NCLIV_005900 672 KIEEIKK|KM 0.070 . NCLIV_005900 673 IEEIKKK|MK 0.148 . NCLIV_005900 675 EIKKKMK|DY 0.089 . NCLIV_005900 679 KMKDYSK|RY 0.063 . NCLIV_005900 680 MKDYSKR|YE 0.207 . NCLIV_005900 687 YEAEDEK|LR 0.054 . NCLIV_005900 689 AEDEKLR|LE 0.065 . NCLIV_005900 693 KLRLEQR|SA 0.152 . NCLIV_005900 698 QRSAFIR|QR 0.122 . NCLIV_005900 700 SAFIRQR|KE 0.104 . NCLIV_005900 701 AFIRQRK|EE 0.246 . NCLIV_005900 709 EMDEFTR|VL 0.075 . NCLIV_005900 718 DGLNQWK|VD 0.060 . NCLIV_005900 743 QFDWEDK|EE 0.055 . NCLIV_005900 754 EEELEVK|EE 0.055 . ____________________________^_________________

  • Fasta :-

    >NCLIV_005900 ATGGTTCGCATCGAGAAGGACGACCTCCCCGCGGAGGAACAAGATCTGCTGGAGTTCCTG TCGGAAGACAGCGACGAAGGCGAAGATGACGACCCTGAACAGGCCGAGGAGAAGCTGAAG GAGAAGCTTTCGCAGATGGAGCCTCTCCTGCAGATGGACTACTCCTTTCCTTCCACGATT GTCCTCGTGGGCGTGCCCAAGGTCGGCAAGGACAAGCACGAGAAGCTGCGCCTCGTCCTC GACAAGAAGATGGTTGAGGAGCTGTCGAAGAAGGGTGCCGAGAGCGTCAACGAAGGTCTG ACCATCTCGATGCCTGTCAACGAAGAAACCGGAATGACCAAGGGATTCTGCTTTGTCACC TTCAGCAACCAGTTCAACGCACAGCACGCAGCACACCACCTCAATGGTTGGGCCCTCGAC GCAAAGCATACCTTCAGGGCTGCGCTGCTGGATGATTTTGACGAGATCGTCGGGCGCGGG GCAAACTACCGACCTCCCATCAAGTTGCTTGGATTCACCCGCGAAAACTTCCGCTGGTGG CTGCTCGACGCTCGGGGTCGTGAACAATTCGTCATTCGCTACGCCGATGAGACGGAGATT TACTGGCACGACCCGATCGAGCGGGACTGCAGTGTGTTGGTGTACAACGGTCACCGCGAA AGAGCCGACGGCAAGCGCGTGTGGACGGACTTCCGCGTGCAGTGGTCGCCGCAAGGCTCT TTCCTCGCCACTTTCCACAGGCCGGGTATTGCGCTGTGGGCCGGGGACCAGTTCGAAAAG AAGGTTCGCTTCGAACACAAGGACGTCAAGCAGATCGATTTCTCGCCGAACGAGACCTAC GTGATCACGTGGGATGGGAGCCCGGCGCAGCTCCGCAACGAGAAGGCCGTGCGCATCTGG AAGGTCATGACTGGTGAGTTGCTTCGTCAGTTCCCAACGCCCGCCCACTCCCCGCGTGGC GGCGAGTATCCACACTTCCTCTTCTCCCACGACGACCGATACGTCGCCCGAATGGGCGAG AAGGAACTCTGCGTCTACCAGATGGAGTGCGACGAGGAGCCGGAAGCTGCCGACGGCGAG AAGGGCGAAGACAAAGGCAGGAAGGGCCAGGACCGCTGCGCCGTGCGTCTTCTCCGCGAC CCACGAGACGGCAAGCTTTCGTCTTTGAAGTATCCTCTCGAGAAGTTTGAGTGGTCGCCC ACAGAAAACATCATCTCTGTGTGGATCAAGGGCTCTGAGGACGCTCCAGGTCGTCTGCTC TTGGTCGAGATCCCCAGCCGTCGCGAGTTGAGCAGCAAGAACGTGTACAACGTCAAGGGC GCATCCATGCACTGGCAATCCAAGGGCGACTTCCTTTGCCTTCGAACGGTCGCGTTCAAG AAGACTGGCAAGAAGGGAAAGAAGGAATTCACGCAGCTTGAGATCTTCCGCATGCGGGAG AAGGACATCCCCGTGGACAACGTCCAACTCAACGACGTCGCGGTCCAACTCCACTGGGAA GAAGGCTACAGCAAGAGATTCGCGCTCGTCGTCCACGACGAGCAGACGAGCAACCAAGCC CTCCGATTCTACCGCGTTTGTGACGCCAGCGAAGACGGCAAGCGCGACACGACGTTGATC TACTCCTTCGACATCAGTGGATACATGAACTACATGCAGTGGTCACCTTTCGGCTCTTAC TTCATTCTGGCGTCTCTCGGTCTCGACGGCACTCTCCTGTTCTGCTGCCTGAACGACCAA GACACTGTGCAGGTTCTCCACATGGATGAGCACTTCATGGTGAACGAAGTCAGGTGGTCA GCGTGTGGACGGTACCTCAGCACAGCGGTCGTCCTGCCGATGCTCCCCAGCAGCAACACT GCCTCCTTCCGTCTGGGCTCCAACACAGGTTACAAGATCTGGACGTTCCAGGGAAAGCTG CAGTACAAGTGTCAGAAGGACCAGTTCTACCAGTTCCTGTGGAGGCCGCATCCTCCGTCT CTGTTGAAGAAAGAGAAGATCGAGGAAATCAAGAAGAAAATGAAGGACTACAGCAAACGG TACGAGGCCGAGGACGAAAAACTGCGACTTGAGCAGCGATCCGCCTTCATTCGTCAACGA AAGGAGGAAATGGACGAGTTCACCAGGGTCCTTGATGGCCTTAACCAATGGAAAGTCGAT CATGATATGTATGACGAGTGGCAGCTGGCGTACGAAACGTTCGACGCCCAGTTTGACTGG GAGGATAAAGAAGAAGTTATCGAAGAAGAACTCGAAGTTAAGGAGGAGATCATCACGTAA
  • Download Fasta

  • Fasta :-

    MVRIEKDDLPAEEQDLLEFLSEDSDEGEDDDPEQAEEKLKEKLSQMEPLLQMDYSFPSTI VLVGVPKVGKDKHEKLRLVLDKKMVEELSKKGAESVNEGLTISMPVNEETGMTKGFCFVT FSNQFNAQHAAHHLNGWALDAKHTFRAALLDDFDEIVGRGANYRPPIKLLGFTRENFRWW LLDARGREQFVIRYADETEIYWHDPIERDCSVLVYNGHRERADGKRVWTDFRVQWSPQGS FLATFHRPGIALWAGDQFEKKVRFEHKDVKQIDFSPNETYVITWDGSPAQLRNEKAVRIW KVMTGELLRQFPTPAHSPRGGEYPHFLFSHDDRYVARMGEKELCVYQMECDEEPEAADGE KGEDKGRKGQDRCAVRLLRDPRDGKLSSLKYPLEKFEWSPTENIISVWIKGSEDAPGRLL LVEIPSRRELSSKNVYNVKGASMHWQSKGDFLCLRTVAFKKTGKKGKKEFTQLEIFRMRE KDIPVDNVQLNDVAVQLHWEEGYSKRFALVVHDEQTSNQALRFYRVCDASEDGKRDTTLI YSFDISGYMNYMQWSPFGSYFILASLGLDGTLLFCCLNDQDTVQVLHMDEHFMVNEVRWS ACGRYLSTAVVLPMLPSSNTASFRLGSNTGYKIWTFQGKLQYKCQKDQFYQFLWRPHPPS LLKKEKIEEIKKKMKDYSKRYEAEDEKLRLEQRSAFIRQRKEEMDEFTRVLDGLNQWKVD HDMYDEWQLAYETFDAQFDWEDKEEVIEEELEVKEEIIT

  • title: polypeptide substrate binding site
  • coordinates: L62,V65,K72,K75,L76,L78,V79,L80,K82,K83,K90,H133,L134,N135,G136,A138,L139,T144,F145
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_00590095 SKGAESVNEG0.994unspNCLIV_00590095 SKGAESVNEG0.994unspNCLIV_00590095 SKGAESVNEG0.994unspNCLIV_005900275 SQIDFSPNET0.996unspNCLIV_005900317 STPAHSPRGG0.997unspNCLIV_005900431 SRRELSSKNV0.993unspNCLIV_00590024 SLSEDSDEGE0.992unspNCLIV_00590089 SVEELSKKGA0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India