NCLIV_008320 | protein F23B2.12, partially confirmed by transcript evidence, related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008236      

  • Computed_GO_Functions:  serine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_008320SP0.2720230.7245400.003438CS pos: 49-50. VNA-TS. Pr: 0.7012
No Results

  • Fasta :-

    >NCLIV_008320 MGGGCLPRFSSSNSGRRSCACRPSRFRLPLLVICACILLASLATKQVNATSWFYRFFPVQ REEHARLEALKQGRHTGKEEIDETEGGREIREFEEGTGSRDASAPSAEEGILPAEFLPPF LRRFLPPRTSQAAQVNVSRENERRSTVREDIEVKEGWFEQPLDHGNPLVFNRPQHAAWRQ KFYSAKRKRPSCQKREQARNEHGSLENAERSEQGQACPDDAIRPVFVYIGGEGPLSSMEV KQGLLAEMGEAFGASVYALEHRYYGDSHPRPDSSVPNLQWLTSHQALGDLAAFVAHVKRE QAEQHPQNVSPEDIPVIVFGCSYPGSLAAYARSKYPASILGAISSSSPVEASALFQAFDQ TVQRVLPSACTSQIKAATAIVERRIFTSEEEAVKVAAKFGCGAEVSMKTHDQRVALLYVI ADAVAQSVQYNRNPKRPWIDEVCNCFAEAPPARTEKVGNEDTKARRSEEDELLDALAKAV QLMLAELKMTCKDSNMLQLADTRLGPQASASARLWVWQSCAEYGYWQVAYKGSVRSRLID LNWHLRMCDALFPLPSGSKFSTDVVDETNVWSGDKHVVGVGAATNIHFTNGENDPWAPLS VTEISPFVTERQGLSSFTIKNGSHCNDFYAYEDGTEPLPVTEAKARIQRAIRLWLEDFQA RHAQRRARNTPETNKGISRGENEL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_008320.fa Sequence name : NCLIV_008320 Sequence length : 684 VALUES OF COMPUTED PARAMETERS Coef20 : 4.188 CoefTot : 0.675 ChDiff : -5 ZoneTo : 61 KR : 9 DE : 0 CleavSite : 65 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.118 2.547 0.598 0.755 MesoH : -0.011 0.466 -0.166 0.236 MuHd_075 : 46.574 23.373 12.842 9.797 MuHd_095 : 22.388 13.512 5.399 4.622 MuHd_100 : 23.823 17.125 6.818 6.267 MuHd_105 : 30.890 20.176 8.337 7.428 Hmax_075 : 11.550 6.767 4.621 2.217 Hmax_095 : 6.125 10.412 3.280 -0.630 Hmax_100 : 12.600 9.800 1.290 4.420 Hmax_105 : 11.400 10.200 1.602 4.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3158 0.6842 DFMC : 0.1099 0.8901 This protein is probably imported in mitochondria. f(Ser) = 0.1311 f(Arg) = 0.1311 CMi = 0.51713 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 684 NCLIV_008320 MGGGCLPRFSSSNSGRRSCACRPSRFRLPLLVICACILLASLATKQVNATSWFYRFFPVQREEHARLEALKQGRHTGKEE 80 IDETEGGREIREFEEGTGSRDASAPSAEEGILPAEFLPPFLRRFLPPRTSQAAQVNVSRENERRSTVREDIEVKEGWFEQ 160 PLDHGNPLVFNRPQHAAWRQKFYSAKRKRPSCQKREQARNEHGSLENAERSEQGQACPDDAIRPVFVYIGGEGPLSSMEV 240 KQGLLAEMGEAFGASVYALEHRYYGDSHPRPDSSVPNLQWLTSHQALGDLAAFVAHVKREQAEQHPQNVSPEDIPVIVFG 320 CSYPGSLAAYARSKYPASILGAISSSSPVEASALFQAFDQTVQRVLPSACTSQIKAATAIVERRIFTSEEEAVKVAAKFG 400 CGAEVSMKTHDQRVALLYVIADAVAQSVQYNRNPKRPWIDEVCNCFAEAPPARTEKVGNEDTKARRSEEDELLDALAKAV 480 QLMLAELKMTCKDSNMLQLADTRLGPQASASARLWVWQSCAEYGYWQVAYKGSVRSRLIDLNWHLRMCDALFPLPSGSKF 560 STDVVDETNVWSGDKHVVGVGAATNIHFTNGENDPWAPLSVTEISPFVTERQGLSSFTIKNGSHCNDFYAYEDGTEPLPV 640 TEAKARIQRAIRLWLEDFQARHAQRRARNTPETNKGISRGENEL 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_008320 8 GGGCLPR|FS 0.094 . NCLIV_008320 16 SSSNSGR|RS 0.165 . NCLIV_008320 17 SSNSGRR|SC 0.195 . NCLIV_008320 22 RRSCACR|PS 0.124 . NCLIV_008320 25 CACRPSR|FR 0.193 . NCLIV_008320 27 CRPSRFR|LP 0.069 . NCLIV_008320 45 LASLATK|QV 0.082 . NCLIV_008320 55 ATSWFYR|FF 0.170 . NCLIV_008320 61 RFFPVQR|EE 0.089 . NCLIV_008320 66 QREEHAR|LE 0.097 . NCLIV_008320 71 ARLEALK|QG 0.067 . NCLIV_008320 74 EALKQGR|HT 0.149 . NCLIV_008320 78 QGRHTGK|EE 0.074 . NCLIV_008320 88 DETEGGR|EI 0.082 . NCLIV_008320 91 EGGREIR|EF 0.338 . NCLIV_008320 100 EEGTGSR|DA 0.110 . NCLIV_008320 122 FLPPFLR|RF 0.069 . NCLIV_008320 123 LPPFLRR|FL 0.174 . NCLIV_008320 128 RRFLPPR|TS 0.116 . NCLIV_008320 139 AQVNVSR|EN 0.079 . NCLIV_008320 143 VSRENER|RS 0.090 . NCLIV_008320 144 SRENERR|ST 0.260 . NCLIV_008320 148 ERRSTVR|ED 0.107 . NCLIV_008320 154 REDIEVK|EG 0.056 . NCLIV_008320 172 NPLVFNR|PQ 0.117 . NCLIV_008320 179 PQHAAWR|QK 0.090 . NCLIV_008320 181 HAAWRQK|FY 0.100 . NCLIV_008320 186 QKFYSAK|RK 0.068 . NCLIV_008320 187 KFYSAKR|KR 0.110 . NCLIV_008320 188 FYSAKRK|RP 0.096 . NCLIV_008320 189 YSAKRKR|PS 0.394 . NCLIV_008320 194 KRPSCQK|RE 0.058 . NCLIV_008320 195 RPSCQKR|EQ 0.390 . NCLIV_008320 199 QKREQAR|NE 0.137 . NCLIV_008320 210 SLENAER|SE 0.106 . NCLIV_008320 223 CPDDAIR|PV 0.122 . NCLIV_008320 241 LSSMEVK|QG 0.081 . NCLIV_008320 262 VYALEHR|YY 0.131 . NCLIV_008320 270 YGDSHPR|PD 0.091 . NCLIV_008320 298 AFVAHVK|RE 0.058 . NCLIV_008320 299 FVAHVKR|EQ 0.206 . NCLIV_008320 332 SLAAYAR|SK 0.162 . NCLIV_008320 334 AAYARSK|YP 0.072 . NCLIV_008320 364 FDQTVQR|VL 0.082 . NCLIV_008320 375 ACTSQIK|AA 0.072 . NCLIV_008320 383 ATAIVER|RI 0.105 . NCLIV_008320 384 TAIVERR|IF 0.186 . NCLIV_008320 394 SEEEAVK|VA 0.062 . NCLIV_008320 398 AVKVAAK|FG 0.085 . NCLIV_008320 408 GAEVSMK|TH 0.064 . NCLIV_008320 413 MKTHDQR|VA 0.083 . NCLIV_008320 432 QSVQYNR|NP 0.068 . NCLIV_008320 435 QYNRNPK|RP 0.108 . NCLIV_008320 436 YNRNPKR|PW 0.257 . NCLIV_008320 453 AEAPPAR|TE 0.095 . NCLIV_008320 456 PPARTEK|VG 0.109 . NCLIV_008320 463 VGNEDTK|AR 0.072 . NCLIV_008320 465 NEDTKAR|RS 0.094 . NCLIV_008320 466 EDTKARR|SE 0.216 . NCLIV_008320 478 LLDALAK|AV 0.073 . NCLIV_008320 488 LMLAELK|MT 0.063 . NCLIV_008320 492 ELKMTCK|DS 0.067 . NCLIV_008320 503 LQLADTR|LG 0.068 . NCLIV_008320 513 QASASAR|LW 0.125 . NCLIV_008320 531 YWQVAYK|GS 0.067 . NCLIV_008320 535 AYKGSVR|SR 0.095 . NCLIV_008320 537 KGSVRSR|LI 0.117 . NCLIV_008320 546 DLNWHLR|MC 0.106 . NCLIV_008320 559 PLPSGSK|FS 0.062 . NCLIV_008320 575 NVWSGDK|HV 0.073 . NCLIV_008320 611 SPFVTER|QG 0.093 . NCLIV_008320 620 LSSFTIK|NG 0.080 . NCLIV_008320 644 LPVTEAK|AR 0.068 . NCLIV_008320 646 VTEAKAR|IQ 0.107 . NCLIV_008320 649 AKARIQR|AI 0.303 . NCLIV_008320 652 RIQRAIR|LW 0.175 . NCLIV_008320 661 LEDFQAR|HA 0.097 . NCLIV_008320 665 QARHAQR|RA 0.113 . NCLIV_008320 666 ARHAQRR|AR 0.208 . NCLIV_008320 668 HAQRRAR|NT 0.315 . NCLIV_008320 675 NTPETNK|GI 0.079 . NCLIV_008320 679 TNKGISR|GE 0.094 . ____________________________^_________________

  • Fasta :-

    >NCLIV_008320 ATGGGGGGTGGTTGCCTTCCTCGTTTTTCCTCTTCAAACTCAGGAAGGCGCTCCTGCGCC TGCCGACCGTCTCGCTTTCGTCTCCCTCTGCTTGTCATCTGTGCATGCATTCTCCTCGCC TCTCTCGCCACCAAACAAGTCAACGCCACTAGCTGGTTCTACCGCTTCTTCCCCGTCCAG CGAGAGGAGCATGCGCGCCTGGAAGCCCTCAAGCAAGGCCGGCACACAGGAAAGGAAGAG ATAGACGAGACAGAGGGAGGTAGAGAAATCCGGGAGTTTGAAGAAGGGACGGGCAGTCGA GACGCTTCCGCTCCCTCTGCGGAGGAAGGGATACTCCCTGCTGAGTTCCTGCCTCCCTTT CTCCGCCGTTTTCTTCCTCCGCGGACTTCTCAGGCAGCCCAGGTAAATGTGTCTCGCGAG AACGAGCGGCGAAGCACAGTTCGGGAAGACATTGAGGTAAAGGAAGGATGGTTTGAGCAG CCTCTGGACCACGGAAACCCCCTCGTGTTCAACAGACCACAACATGCCGCGTGGCGGCAA AAGTTCTACAGTGCCAAGAGGAAACGCCCGTCGTGTCAAAAGAGAGAGCAAGCGAGAAAC GAACACGGAAGCCTCGAAAACGCGGAAAGGAGCGAGCAGGGGCAAGCATGCCCCGACGAC GCCATTCGGCCTGTCTTTGTTTACATCGGTGGCGAGGGGCCCTTGTCTTCCATGGAAGTC AAGCAAGGTCTCCTAGCAGAGATGGGCGAAGCCTTTGGAGCTTCTGTGTATGCCCTCGAG CATCGCTACTATGGGGACTCTCACCCTCGCCCTGACTCGAGTGTCCCCAATCTGCAGTGG CTCACCTCTCATCAGGCTCTCGGCGACCTTGCGGCTTTCGTCGCACACGTGAAACGCGAG CAAGCTGAGCAACATCCACAGAACGTCTCTCCTGAAGACATCCCAGTAATCGTCTTTGGG TGCTCCTATCCAGGCTCGCTGGCAGCGTACGCTCGCTCAAAGTATCCGGCCTCGATTCTT GGCGCGATTTCTTCTTCTTCTCCTGTGGAAGCTTCCGCCCTCTTTCAGGCCTTCGATCAG ACCGTCCAGCGCGTCTTGCCCTCTGCATGCACGTCCCAAATCAAGGCGGCGACGGCGATC GTTGAGCGACGGATCTTCACCAGCGAAGAAGAAGCTGTTAAAGTTGCGGCAAAGTTTGGC TGCGGTGCCGAGGTTTCCATGAAGACCCACGATCAGCGCGTGGCTCTTCTGTATGTTATA GCCGATGCAGTTGCCCAATCGGTGCAATATAATCGCAACCCAAAGCGTCCTTGGATAGAC GAAGTCTGTAACTGCTTCGCCGAGGCGCCGCCCGCAAGAACGGAAAAGGTTGGGAACGAA GACACAAAGGCACGCAGGAGCGAAGAAGATGAGCTTCTTGATGCTTTGGCCAAGGCTGTG CAACTCATGCTTGCGGAGCTGAAGATGACATGCAAAGATTCGAACATGTTGCAGCTGGCA GATACACGACTCGGGCCTCAAGCCTCAGCGAGCGCGCGCCTGTGGGTCTGGCAAAGCTGT GCAGAGTACGGCTACTGGCAAGTGGCTTACAAAGGCAGCGTGCGCTCGCGCCTGATTGAT CTGAACTGGCATCTCCGCATGTGCGACGCGCTCTTTCCTCTTCCCTCAGGAAGCAAATTC AGCACGGATGTCGTCGACGAGACGAATGTGTGGTCAGGAGACAAACATGTGGTTGGCGTC GGAGCTGCCACAAATATTCACTTCACCAACGGCGAAAATGATCCTTGGGCACCTCTCTCA GTGACAGAAATTTCGCCGTTTGTCACCGAACGCCAGGGCTTATCTTCCTTCACCATAAAG AACGGTAGTCACTGTAACGACTTCTACGCGTACGAGGACGGCACAGAGCCGCTGCCGGTG ACGGAGGCAAAGGCGCGCATTCAGCGCGCCATCCGTCTGTGGCTAGAGGACTTCCAGGCG AGGCACGCGCAGCGAAGGGCGAGAAACACGCCGGAAACAAACAAAGGAATATCCAGGGGG GAAAACGAGTTGTGA
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  • Fasta :-

    MGGGCLPRFSSSNSGRRSCACRPSRFRLPLLVICACILLASLATKQVNATSWFYRFFPVQ REEHARLEALKQGRHTGKEEIDETEGGREIREFEEGTGSRDASAPSAEEGILPAEFLPPF LRRFLPPRTSQAAQVNVSRENERRSTVREDIEVKEGWFEQPLDHGNPLVFNRPQHAAWRQ KFYSAKRKRPSCQKREQARNEHGSLENAERSEQGQACPDDAIRPVFVYIGGEGPLSSMEV KQGLLAEMGEAFGASVYALEHRYYGDSHPRPDSSVPNLQWLTSHQALGDLAAFVAHVKRE QAEQHPQNVSPEDIPVIVFGCSYPGSLAAYARSKYPASILGAISSSSPVEASALFQAFDQ TVQRVLPSACTSQIKAATAIVERRIFTSEEEAVKVAAKFGCGAEVSMKTHDQRVALLYVI ADAVAQSVQYNRNPKRPWIDEVCNCFAEAPPARTEKVGNEDTKARRSEEDELLDALAKAV QLMLAELKMTCKDSNMLQLADTRLGPQASASARLWVWQSCAEYGYWQVAYKGSVRSRLID LNWHLRMCDALFPLPSGSKFSTDVVDETNVWSGDKHVVGVGAATNIHFTNGENDPWAPLS VTEISPFVTERQGLSSFTIKNGSHCNDFYAYEDGTEPLPVTEAKARIQRAIRLWLEDFQA RHAQRRARNTPETNKGISRGENEL

    No Results
No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_008320138 SQVNVSRENE0.993unspNCLIV_008320138 SQVNVSRENE0.993unspNCLIV_008320138 SQVNVSRENE0.993unspNCLIV_008320145 SNERRSTVRE0.997unspNCLIV_008320146 TERRSTVRED0.997unspNCLIV_008320184 SQKFYSAKRK0.993unspNCLIV_008320204 SNEHGSLENA0.992unspNCLIV_008320310 SPQNVSPEDI0.995unspNCLIV_008320347 SISSSSPVEA0.996unspNCLIV_008320388 SRIFTSEEEA0.996unspNCLIV_008320467 SKARRSEEDE0.998unspNCLIV_008320678 SNKGISRGEN0.997unspNCLIV_00832014 SSSSNSGRRS0.996unspNCLIV_008320106 SASAPSAEEG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India