NCLIV_008410 | gamma-aminobutyric acid receptor-associated protein-like 1, related

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_008410OTHER0.9970630.0004250.002513
No Results

  • Fasta :-

    >NCLIV_008410 MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFK YIIHKHINQCAQNSGLPLTHEKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSE NTLG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_008410.fa Sequence name : NCLIV_008410 Sequence length : 124 VALUES OF COMPUTED PARAMETERS Coef20 : 4.033 CoefTot : -0.006 ChDiff : 0 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.382 1.000 -0.233 0.489 MesoH : -0.939 -0.014 -0.592 0.155 MuHd_075 : 24.678 12.459 7.413 2.144 MuHd_095 : 14.272 9.361 2.333 4.347 MuHd_100 : 21.350 12.038 3.805 5.486 MuHd_105 : 24.602 14.845 5.036 5.972 Hmax_075 : -2.100 3.617 -1.500 0.572 Hmax_095 : -11.500 1.500 -5.233 1.060 Hmax_100 : -8.700 2.200 -4.978 1.880 Hmax_105 : 2.333 4.783 -1.142 2.625 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7763 0.2237 DFMC : 0.8401 0.1599
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 124 NCLIV_008410 MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFKYIIHKHINQCAQNSGLPLTH 80 EKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSENTLG 160 ................................................................................ 80 ............................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_008410 5 --MPSIR|DE 0.094 . NCLIV_008410 12 DEVSFEK|RT 0.058 . NCLIV_008410 13 EVSFEKR|TA 0.318 . NCLIV_008410 19 RTAEAHR|IR 0.088 . NCLIV_008410 21 AEAHRIR|AK 0.102 . NCLIV_008410 23 AHRIRAK|YP 0.074 . NCLIV_008410 27 RAKYPNR|IP 0.086 . NCLIV_008410 34 IPVICEK|AP 0.064 . NCLIV_008410 37 ICEKAPR|SD 0.123 . NCLIV_008410 45 DLPVIDK|KK 0.059 . NCLIV_008410 46 LPVIDKK|KF 0.087 . NCLIV_008410 47 PVIDKKK|FL 0.110 . NCLIV_008410 60 MLVGEFK|YI 0.077 . NCLIV_008410 65 FKYIIHK|HI 0.068 . NCLIV_008410 82 LPLTHEK|TI 0.063 . NCLIV_008410 94 VENTAPK|AG 0.061 . ____________________________^_________________

  • Fasta :-

    >NCLIV_008410 ATGCCGTCGATTCGCGACGAAGTGTCCTTTGAGAAGAGGACGGCGGAGGCACACCGCATT CGGGCCAAGTATCCGAACCGAATTCCGGTTATATGCGAAAAGGCTCCCCGGTCGGACCTC CCAGTGATTGACAAAAAGAAGTTTCTGGTGCCGATGAATATGCTCGTAGGAGAATTCAAG TACATCATCCACAAGCACATCAACCAGTGTGCACAGAACAGCGGGTTGCCACTGACTCAC GAGAAGACGATTTATCTGTTTGTCGAGAACACTGCTCCGAAGGCGGGTGCACTGATGCAG GAAGTGTACGAACAGCACGTGTCCGACGACGGTTTCCTCTACGTGGAATATTCGTCGGAG AATACTCTCGGATGA
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  • Fasta :-

    MPSIRDEVSFEKRTAEAHRIRAKYPNRIPVICEKAPRSDLPVIDKKKFLVPMNMLVGEFK YIIHKHINQCAQNSGLPLTHEKTIYLFVENTAPKAGALMQEVYEQHVSDDGFLYVEYSSE NTLG

  • title: Atg7 interaction site
  • coordinates: R27,K45,F48,G57,E58,K60,Y61,I62,H64,K65,H66,E81,T83,I84,Y85,F87,N90,T91,K94,A95,G96
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India