NCLIV_011220 | protease Do (Precursor), related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_011220OTHER0.9420970.0574850.000418
No Results

  • Fasta :-

    >NCLIV_011220 MHVYGCVVVTAAHLFDERSSNASSSSEAASVAGTETVSAPLPRPREAPHLSNVSPPPKPG DGKEEEVVYVVKMNDGQLLWGDFRGKDTRSDVAVLRLRAPHGDRPLCLPSVSLHSPVRDR RRGEKTESPYRPRLGEFVVAVGTTYYGDEPVGACGIVSQPCQSFSALNAGTNVGFIQLGV ITLPGMSGSLVANMRGEVVGMVVKKFQDYGLALPIHFVTAVCDQLDATGHYQAPSLGLVF QQPASLADVAAFASSEDTPCIAPREQHLRVDSVVPGSPAEKAGIQKRDVVVAADGSAVCN LHALFDFILSRAPGEAVVLDVLRANIKRTCKVILSPPAGPAGPPG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_011220.fa Sequence name : NCLIV_011220 Sequence length : 345 VALUES OF COMPUTED PARAMETERS Coef20 : 3.987 CoefTot : -0.481 ChDiff : -3 ZoneTo : 15 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.647 1.500 0.218 0.614 MesoH : 0.407 0.748 -0.078 0.368 MuHd_075 : 21.400 4.945 6.373 2.332 MuHd_095 : 15.413 14.512 5.737 3.785 MuHd_100 : 13.006 11.745 4.220 2.786 MuHd_105 : 7.858 7.043 1.824 1.496 Hmax_075 : 17.150 13.533 3.580 5.215 Hmax_095 : 14.000 17.700 2.738 6.000 Hmax_100 : 13.200 11.000 1.592 4.920 Hmax_105 : 11.900 11.300 0.243 4.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9788 0.0212 DFMC : 0.9501 0.0499
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 345 NCLIV_011220 MHVYGCVVVTAAHLFDERSSNASSSSEAASVAGTETVSAPLPRPREAPHLSNVSPPPKPGDGKEEEVVYVVKMNDGQLLW 80 GDFRGKDTRSDVAVLRLRAPHGDRPLCLPSVSLHSPVRDRRRGEKTESPYRPRLGEFVVAVGTTYYGDEPVGACGIVSQP 160 CQSFSALNAGTNVGFIQLGVITLPGMSGSLVANMRGEVVGMVVKKFQDYGLALPIHFVTAVCDQLDATGHYQAPSLGLVF 240 QQPASLADVAAFASSEDTPCIAPREQHLRVDSVVPGSPAEKAGIQKRDVVVAADGSAVCNLHALFDFILSRAPGEAVVLD 320 VLRANIKRTCKVILSPPAGPAGPPG 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_011220 18 AHLFDER|SS 0.096 . NCLIV_011220 43 VSAPLPR|PR 0.096 . NCLIV_011220 45 APLPRPR|EA 0.091 . NCLIV_011220 58 NVSPPPK|PG 0.080 . NCLIV_011220 63 PKPGDGK|EE 0.063 . NCLIV_011220 72 EVVYVVK|MN 0.074 . NCLIV_011220 84 LLWGDFR|GK 0.083 . NCLIV_011220 86 WGDFRGK|DT 0.067 . NCLIV_011220 89 FRGKDTR|SD 0.168 . NCLIV_011220 96 SDVAVLR|LR 0.081 . NCLIV_011220 98 VAVLRLR|AP 0.075 . NCLIV_011220 104 RAPHGDR|PL 0.068 . NCLIV_011220 118 SLHSPVR|DR 0.162 . NCLIV_011220 120 HSPVRDR|RR 0.096 . NCLIV_011220 121 SPVRDRR|RG 0.471 . NCLIV_011220 122 PVRDRRR|GE 0.137 . NCLIV_011220 125 DRRRGEK|TE 0.157 . NCLIV_011220 131 KTESPYR|PR 0.068 . NCLIV_011220 133 ESPYRPR|LG 0.083 . NCLIV_011220 195 SLVANMR|GE 0.091 . NCLIV_011220 204 VVGMVVK|KF 0.062 . NCLIV_011220 205 VGMVVKK|FQ 0.164 . NCLIV_011220 264 TPCIAPR|EQ 0.105 . NCLIV_011220 269 PREQHLR|VD 0.116 . NCLIV_011220 281 PGSPAEK|AG 0.074 . NCLIV_011220 286 EKAGIQK|RD 0.059 . NCLIV_011220 287 KAGIQKR|DV 0.469 . NCLIV_011220 311 FDFILSR|AP 0.089 . NCLIV_011220 323 VVLDVLR|AN 0.072 . NCLIV_011220 327 VLRANIK|RT 0.067 . NCLIV_011220 328 LRANIKR|TC 0.202 . NCLIV_011220 331 NIKRTCK|VI 0.090 . ____________________________^_________________

  • Fasta :-

    >NCLIV_011220 ATGCATGTCTACGGATGCGTGGTGGTCACGGCAGCGCATCTGTTTGACGAACGCTCGTCG AATGCGTCTTCCTCGAGCGAAGCTGCGAGCGTTGCGGGGACGGAAACTGTCTCTGCGCCG CTGCCTCGTCCTCGCGAAGCTCCTCACTTGTCGAATGTCTCGCCTCCCCCGAAACCTGGA GACGGCAAGGAAGAGGAAGTTGTGTATGTGGTGAAGATGAACGACGGCCAGCTTTTGTGG GGCGATTTCAGAGGCAAAGACACTCGATCCGACGTGGCAGTGTTGCGCCTCCGCGCCCCG CACGGCGACCGGCCTCTCTGCCTCCCCTCGGTTTCTCTGCACAGCCCCGTCCGTGATCGG CGCCGAGGCGAAAAGACCGAGAGTCCGTATCGGCCGCGATTGGGTGAATTCGTCGTGGCG GTTGGAACGACTTACTACGGGGACGAACCTGTGGGAGCGTGCGGCATCGTCAGTCAGCCG TGTCAGTCGTTTTCCGCCTTGAATGCCGGCACCAACGTGGGCTTTATCCAACTCGGCGTC ATCACGCTTCCCGGCATGTCGGGATCTCTCGTGGCAAACATGCGTGGAGAAGTCGTAGGC ATGGTGGTCAAGAAATTCCAAGACTACGGGTTGGCGCTTCCGATCCACTTTGTCACCGCG GTGTGCGATCAACTGGACGCAACAGGACACTACCAGGCACCCTCGCTAGGTCTGGTGTTT CAGCAGCCGGCGAGCCTGGCTGACGTCGCCGCCTTCGCGTCCAGCGAGGACACGCCTTGT ATAGCCCCACGCGAACAACACCTGCGCGTCGACTCGGTTGTGCCTGGTAGTCCTGCTGAG AAGGCGGGCATCCAGAAACGAGACGTCGTCGTTGCAGCGGACGGTTCGGCAGTTTGCAAC TTACATGCACTCTTCGATTTCATTTTGAGTCGCGCGCCAGGCGAAGCGGTTGTGTTGGAC GTGCTGAGAGCAAACATAAAGCGCACGTGCAAGGTGATTCTTTCGCCGCCGGCAGGTCCG GCGGGGCCACCCGGGTGA
  • Download Fasta

  • Fasta :-

    MHVYGCVVVTAAHLFDERSSNASSSSEAASVAGTETVSAPLPRPREAPHLSNVSPPPKPG DGKEEEVVYVVKMNDGQLLWGDFRGKDTRSDVAVLRLRAPHGDRPLCLPSVSLHSPVRDR RRGEKTESPYRPRLGEFVVAVGTTYYGDEPVGACGIVSQPCQSFSALNAGTNVGFIQLGV ITLPGMSGSLVANMRGEVVGMVVKKFQDYGLALPIHFVTAVCDQLDATGHYQAPSLGLVF QQPASLADVAAFASSEDTPCIAPREQHLRVDSVVPGSPAEKAGIQKRDVVVAADGSAVCN LHALFDFILSRAPGEAVVLDVLRANIKRTCKVILSPPAGPAGPPG

    No Results
  • title: protein binding site
  • coordinates: S235,L236,G237,L238,F240,N300,L301,L304,F305
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_011220115 SVSLHSPVRD0.996unspNCLIV_011220115 SVSLHSPVRD0.996unspNCLIV_011220115 SVSLHSPVRD0.996unspNCLIV_011220128 SEKTESPYRP0.997unspNCLIV_01122024 SSNASSSSEA0.993unspNCLIV_01122025 SNASSSSEAA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India