NCLIV_012740 | putative DNA repair protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >NCLIV_012740 MPAAVSVQLGRCEHENLTSGKSENGRRERSGDMGERRQKGEGEEEGGRNASVDASSSSSL PREDPSVRGKTGEVGDGKVRFVLAIDEAETIADVTFRYASSWREVLQRRRQQLHAWWNQP GTRALLESPSKRRENERRERQPEGRADAHPRAETQPSLEGDGETSEGSRHGGGVQSASET EAQQGDTDEFIVFDEGPEGSQEPAGPAENVPKESGEAQPEESDPDEVERRLLLEREPLPT SKAGFSKHPKFVLASMLRPSEYLPPGTRPAAFFQGELVYLRRDVSSLKTERQWSREGRRL RAGVTPLRVVFRRNLASQGRQLGEPNSRRGGGSRSQWLNPILQQEGREEERRARREERGT GDGRSVDRVTLGLYGEWQTEGKPPPRVEDGRLPDNGHGNIEVGNLGPVPIGAVHISLADF RCSGCPSLSPAGKQATPLSAASLGGALVAAAAKCGVEFRPAVVAFERKTGSGLAAGSAGW IPVRDGVVVLEADEARVRAAWREEREKREAAWERRRRKKEEREREDGLRKWRVLCRALLF WKEREEDERREKGRSRPEGERV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_012740.fa Sequence name : NCLIV_012740 Sequence length : 562 VALUES OF COMPUTED PARAMETERS Coef20 : 3.596 CoefTot : -0.007 ChDiff : 1 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.553 1.482 0.236 0.580 MesoH : 0.158 0.644 -0.100 0.307 MuHd_075 : 9.659 5.790 2.556 2.701 MuHd_095 : 17.143 9.569 3.531 4.203 MuHd_100 : 12.374 5.398 3.069 3.304 MuHd_105 : 8.856 4.057 2.874 2.644 Hmax_075 : 7.233 6.417 -0.585 3.325 Hmax_095 : 5.775 7.200 -0.249 3.168 Hmax_100 : 6.800 4.700 -0.620 2.670 Hmax_105 : 7.700 9.333 0.691 4.107 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9643 0.0357 DFMC : 0.9421 0.0579
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 562 NCLIV_012740 MPAAVSVQLGRCEHENLTSGKSENGRRERSGDMGERRQKGEGEEEGGRNASVDASSSSSLPREDPSVRGKTGEVGDGKVR 80 FVLAIDEAETIADVTFRYASSWREVLQRRRQQLHAWWNQPGTRALLESPSKRRENERRERQPEGRADAHPRAETQPSLEG 160 DGETSEGSRHGGGVQSASETEAQQGDTDEFIVFDEGPEGSQEPAGPAENVPKESGEAQPEESDPDEVERRLLLEREPLPT 240 SKAGFSKHPKFVLASMLRPSEYLPPGTRPAAFFQGELVYLRRDVSSLKTERQWSREGRRLRAGVTPLRVVFRRNLASQGR 320 QLGEPNSRRGGGSRSQWLNPILQQEGREEERRARREERGTGDGRSVDRVTLGLYGEWQTEGKPPPRVEDGRLPDNGHGNI 400 EVGNLGPVPIGAVHISLADFRCSGCPSLSPAGKQATPLSAASLGGALVAAAAKCGVEFRPAVVAFERKTGSGLAAGSAGW 480 IPVRDGVVVLEADEARVRAAWREEREKREAAWERRRRKKEEREREDGLRKWRVLCRALLFWKEREEDERREKGRSRPEGE 560 RV 640 ............................P................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .....................................P.......................................... 400 ................................................................................ 480 ...........................P.................................................... 560 .. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 3 Name Pos Context Score Pred ____________________________v_________________ NCLIV_012740 11 VSVQLGR|CE 0.094 . NCLIV_012740 21 ENLTSGK|SE 0.076 . NCLIV_012740 26 GKSENGR|RE 0.105 . NCLIV_012740 27 KSENGRR|ER 0.122 . NCLIV_012740 29 ENGRRER|SG 0.612 *ProP* NCLIV_012740 36 SGDMGER|RQ 0.076 . NCLIV_012740 37 GDMGERR|QK 0.292 . NCLIV_012740 39 MGERRQK|GE 0.189 . NCLIV_012740 48 GEEEGGR|NA 0.080 . NCLIV_012740 62 SSSSLPR|ED 0.110 . NCLIV_012740 68 REDPSVR|GK 0.095 . NCLIV_012740 70 DPSVRGK|TG 0.083 . NCLIV_012740 78 GEVGDGK|VR 0.055 . NCLIV_012740 80 VGDGKVR|FV 0.114 . NCLIV_012740 97 IADVTFR|YA 0.142 . NCLIV_012740 103 RYASSWR|EV 0.142 . NCLIV_012740 108 WREVLQR|RR 0.087 . NCLIV_012740 109 REVLQRR|RQ 0.090 . NCLIV_012740 110 EVLQRRR|QQ 0.088 . NCLIV_012740 123 WNQPGTR|AL 0.086 . NCLIV_012740 131 LLESPSK|RR 0.059 . NCLIV_012740 132 LESPSKR|RE 0.163 . NCLIV_012740 133 ESPSKRR|EN 0.166 . NCLIV_012740 137 KRRENER|RE 0.106 . NCLIV_012740 138 RRENERR|ER 0.177 . NCLIV_012740 140 ENERRER|QP 0.204 . NCLIV_012740 145 ERQPEGR|AD 0.097 . NCLIV_012740 151 RADAHPR|AE 0.089 . NCLIV_012740 169 ETSEGSR|HG 0.113 . NCLIV_012740 212 PAENVPK|ES 0.091 . NCLIV_012740 229 DPDEVER|RL 0.074 . NCLIV_012740 230 PDEVERR|LL 0.120 . NCLIV_012740 235 RRLLLER|EP 0.068 . NCLIV_012740 242 EPLPTSK|AG 0.062 . NCLIV_012740 247 SKAGFSK|HP 0.081 . NCLIV_012740 250 GFSKHPK|FV 0.114 . NCLIV_012740 258 VLASMLR|PS 0.083 . NCLIV_012740 268 YLPPGTR|PA 0.074 . NCLIV_012740 281 GELVYLR|RD 0.071 . NCLIV_012740 282 ELVYLRR|DV 0.214 . NCLIV_012740 288 RDVSSLK|TE 0.058 . NCLIV_012740 291 SSLKTER|QW 0.108 . NCLIV_012740 295 TERQWSR|EG 0.089 . NCLIV_012740 298 QWSREGR|RL 0.452 . NCLIV_012740 299 WSREGRR|LR 0.108 . NCLIV_012740 301 REGRRLR|AG 0.239 . NCLIV_012740 308 AGVTPLR|VV 0.082 . NCLIV_012740 312 PLRVVFR|RN 0.102 . NCLIV_012740 313 LRVVFRR|NL 0.255 . NCLIV_012740 320 NLASQGR|QL 0.101 . NCLIV_012740 328 LGEPNSR|RG 0.090 . NCLIV_012740 329 GEPNSRR|GG 0.131 . NCLIV_012740 334 RRGGGSR|SQ 0.113 . NCLIV_012740 347 ILQQEGR|EE 0.082 . NCLIV_012740 351 EGREEER|RA 0.102 . NCLIV_012740 352 GREEERR|AR 0.170 . NCLIV_012740 354 EEERRAR|RE 0.236 . NCLIV_012740 355 EERRARR|EE 0.398 . NCLIV_012740 358 RARREER|GT 0.616 *ProP* NCLIV_012740 364 RGTGDGR|SV 0.219 . NCLIV_012740 368 DGRSVDR|VT 0.077 . NCLIV_012740 382 EWQTEGK|PP 0.066 . NCLIV_012740 386 EGKPPPR|VE 0.085 . NCLIV_012740 391 PRVEDGR|LP 0.100 . NCLIV_012740 421 ISLADFR|CS 0.081 . NCLIV_012740 433 SLSPAGK|QA 0.083 . NCLIV_012740 453 LVAAAAK|CG 0.060 . NCLIV_012740 459 KCGVEFR|PA 0.109 . NCLIV_012740 467 AVVAFER|KT 0.116 . NCLIV_012740 468 VVAFERK|TG 0.077 . NCLIV_012740 484 AGWIPVR|DG 0.094 . NCLIV_012740 496 LEADEAR|VR 0.083 . NCLIV_012740 498 ADEARVR|AA 0.104 . NCLIV_012740 502 RVRAAWR|EE 0.092 . NCLIV_012740 505 AAWREER|EK 0.192 . NCLIV_012740 507 WREEREK|RE 0.062 . NCLIV_012740 508 REEREKR|EA 0.652 *ProP* NCLIV_012740 514 REAAWER|RR 0.103 . NCLIV_012740 515 EAAWERR|RR 0.139 . NCLIV_012740 516 AAWERRR|RK 0.104 . NCLIV_012740 517 AWERRRR|KK 0.460 . NCLIV_012740 518 WERRRRK|KE 0.260 . NCLIV_012740 519 ERRRRKK|EE 0.434 . NCLIV_012740 522 RRKKEER|ER 0.143 . NCLIV_012740 524 KKEERER|ED 0.078 . NCLIV_012740 529 EREDGLR|KW 0.085 . NCLIV_012740 530 REDGLRK|WR 0.061 . NCLIV_012740 532 DGLRKWR|VL 0.220 . NCLIV_012740 536 KWRVLCR|AL 0.084 . NCLIV_012740 542 RALLFWK|ER 0.060 . NCLIV_012740 544 LLFWKER|EE 0.087 . NCLIV_012740 549 EREEDER|RE 0.067 . NCLIV_012740 550 REEDERR|EK 0.152 . NCLIV_012740 552 EDERREK|GR 0.117 . NCLIV_012740 554 ERREKGR|SR 0.262 . NCLIV_012740 556 REKGRSR|PE 0.095 . NCLIV_012740 561 SRPEGER|V- 0.079 . ____________________________^_________________

  • Fasta :-

    >NCLIV_012740 ATGCCGGCTGCGGTGTCTGTACAGCTCGGGCGGTGCGAGCACGAGAATCTGACGAGCGGG AAAAGCGAGAATGGACGCCGAGAGAGGAGCGGCGACATGGGAGAGAGGCGCCAAAAGGGA GAGGGAGAGGAAGAGGGAGGGCGAAATGCATCTGTAGACGCGTCTTCTTCCTCCTCATTG CCTCGCGAAGACCCATCTGTGCGGGGTAAAACGGGAGAAGTTGGAGACGGAAAAGTTCGC TTCGTCCTCGCCATAGACGAAGCAGAAACGATTGCCGATGTCACCTTTCGCTACGCTTCC AGCTGGCGGGAAGTCCTCCAACGACGGCGACAGCAGCTGCATGCGTGGTGGAACCAGCCA GGGACGCGAGCGCTCCTCGAAAGCCCATCAAAGAGAAGAGAGAACGAACGGCGAGAGAGA CAGCCGGAGGGTCGGGCCGATGCGCATCCGCGCGCGGAGACGCAGCCGAGTCTCGAGGGT GACGGAGAGACGAGCGAAGGATCACGACACGGTGGGGGAGTGCAAAGCGCGTCTGAGACG GAAGCGCAGCAGGGAGACACCGACGAATTCATCGTTTTCGACGAAGGCCCAGAGGGCTCT CAGGAGCCGGCAGGACCGGCAGAAAACGTGCCGAAAGAGAGCGGAGAAGCGCAGCCAGAA GAGAGCGATCCGGACGAAGTGGAGCGGCGTCTTCTTCTCGAACGCGAACCTCTCCCGACA AGCAAAGCTGGGTTTTCAAAACACCCGAAATTCGTTCTCGCCTCCATGCTACGGCCCTCA GAGTACTTGCCGCCTGGAACGCGCCCCGCGGCTTTCTTCCAGGGCGAACTCGTCTATTTG CGCCGCGACGTTTCCTCGCTGAAAACGGAGCGTCAGTGGAGCCGCGAGGGTCGGCGTCTC CGCGCAGGCGTCACGCCGCTGCGAGTTGTCTTCAGGCGAAATCTCGCCTCCCAAGGGCGT CAGCTGGGAGAACCAAACAGCCGGCGAGGCGGCGGAAGTCGCTCGCAGTGGCTAAACCCG ATCCTGCAACAAGAAGGGAGAGAAGAAGAGAGACGCGCGAGACGAGAAGAGAGAGGGACA GGAGACGGGCGGAGCGTGGATCGCGTGACGCTTGGGCTCTACGGCGAGTGGCAAACGGAG GGAAAGCCGCCGCCGCGCGTGGAAGACGGTCGTCTCCCTGACAACGGCCACGGCAACATC GAAGTGGGGAACCTGGGGCCAGTTCCGATCGGCGCCGTCCACATCTCCCTCGCGGACTTT CGCTGCTCGGGATGTCCGTCGCTGTCTCCCGCGGGCAAGCAGGCGACGCCGCTGAGTGCC GCGAGTCTCGGCGGCGCTTTGGTGGCAGCCGCTGCGAAATGCGGAGTGGAATTCCGACCC GCAGTCGTCGCCTTTGAACGCAAGACAGGCTCCGGTCTCGCCGCGGGCTCCGCCGGCTGG ATCCCCGTGCGCGACGGGGTTGTGGTGCTTGAGGCGGACGAGGCGCGCGTGCGCGCAGCT TGGCGAGAGGAACGGGAGAAGCGCGAAGCGGCGTGGGAGCGGAGGCGCCGAAAGAAAGAA GAGCGCGAGAGAGAAGACGGCCTGCGGAAATGGCGGGTTCTGTGTCGGGCATTGCTCTTC TGGAAGGAAAGGGAGGAGGACGAGCGGCGGGAGAAGGGACGAAGCCGACCCGAAGGCGAA CGCGTGTGA
  • Download Fasta

  • Fasta :-

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_012740286 SRDVSSLKTE0.99unspNCLIV_012740286 SRDVSSLKTE0.99unspNCLIV_012740286 SRDVSSLKTE0.99unspNCLIV_012740294 SERQWSREGR0.996unspNCLIV_012740555 SEKGRSRPEG0.997unspNCLIV_01274030 SRRERSGDMG0.993unspNCLIV_012740222 SQPEESDPDE0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India