NCLIV_013230 | conserved hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_013230OTHER0.9999980.0000020.000000
No Results

  • Fasta :-

    >NCLIV_013230 MPTQHPVPLYREGKREGEREEAADDEETWRGVGEFADVLGIPRTRFLHFASPFTPAAGSE SLGDGSLVSPFDTEWQPAVALLRGRALSVTPSPSCPDLSSPSSVLSSLPSSLPSSFSSSL PSSFSSSLPSSFPSGSAPSRASHAPSPPFCATVAVGLAWGTAALLLACGTRGFRAATRNA SIALRFPRVSLGQGKTAELRSRAEAVLSGQRAQAELLASLLGNAEKEKKREGGENEAQTE SRTSDSNATVSDLLRLMRKGAFLTPEEAQDLGIIDHIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_013230.fa Sequence name : NCLIV_013230 Sequence length : 278 VALUES OF COMPUTED PARAMETERS Coef20 : 2.720 CoefTot : -1.053 ChDiff : -4 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 1.900 0.388 0.717 MesoH : 0.994 0.477 0.039 0.298 MuHd_075 : 15.077 5.081 4.115 4.000 MuHd_095 : 30.636 8.809 5.999 7.086 MuHd_100 : 32.519 10.422 8.130 7.141 MuHd_105 : 32.496 12.551 9.317 6.705 Hmax_075 : -2.800 -4.000 -2.386 1.510 Hmax_095 : 3.587 -2.450 -2.098 2.450 Hmax_100 : 4.900 -2.200 -0.428 2.510 Hmax_105 : 5.717 -0.233 0.141 2.788 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9805 0.0195 DFMC : 0.9800 0.0200
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 278 NCLIV_013230 MPTQHPVPLYREGKREGEREEAADDEETWRGVGEFADVLGIPRTRFLHFASPFTPAAGSESLGDGSLVSPFDTEWQPAVA 80 LLRGRALSVTPSPSCPDLSSPSSVLSSLPSSLPSSFSSSLPSSFSSSLPSSFPSGSAPSRASHAPSPPFCATVAVGLAWG 160 TAALLLACGTRGFRAATRNASIALRFPRVSLGQGKTAELRSRAEAVLSGQRAQAELLASLLGNAEKEKKREGGENEAQTE 240 SRTSDSNATVSDLLRLMRKGAFLTPEEAQDLGIIDHIL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_013230 11 HPVPLYR|EG 0.091 . NCLIV_013230 14 PLYREGK|RE 0.139 . NCLIV_013230 15 LYREGKR|EG 0.172 . NCLIV_013230 19 GKREGER|EE 0.073 . NCLIV_013230 30 DDEETWR|GV 0.136 . NCLIV_013230 43 DVLGIPR|TR 0.064 . NCLIV_013230 45 LGIPRTR|FL 0.092 . NCLIV_013230 83 PAVALLR|GR 0.071 . NCLIV_013230 85 VALLRGR|AL 0.083 . NCLIV_013230 140 SGSAPSR|AS 0.104 . NCLIV_013230 171 LLACGTR|GF 0.106 . NCLIV_013230 174 CGTRGFR|AA 0.184 . NCLIV_013230 178 GFRAATR|NA 0.147 . NCLIV_013230 185 NASIALR|FP 0.118 . NCLIV_013230 188 IALRFPR|VS 0.289 . NCLIV_013230 195 VSLGQGK|TA 0.064 . NCLIV_013230 200 GKTAELR|SR 0.101 . NCLIV_013230 202 TAELRSR|AE 0.081 . NCLIV_013230 211 AVLSGQR|AQ 0.066 . NCLIV_013230 226 LLGNAEK|EK 0.062 . NCLIV_013230 228 GNAEKEK|KR 0.084 . NCLIV_013230 229 NAEKEKK|RE 0.097 . NCLIV_013230 230 AEKEKKR|EG 0.251 . NCLIV_013230 242 EAQTESR|TS 0.097 . NCLIV_013230 255 TVSDLLR|LM 0.092 . NCLIV_013230 258 DLLRLMR|KG 0.127 . NCLIV_013230 259 LLRLMRK|GA 0.089 . ____________________________^_________________

  • Fasta :-

    >NCLIV_013230 ATGCCGACACAACACCCAGTGCCTCTCTATCGCGAAGGCAAGCGCGAAGGGGAGCGTGAA GAGGCGGCTGACGACGAAGAGACATGGAGAGGAGTCGGGGAGTTCGCAGATGTCCTGGGC ATCCCCAGAACCCGATTCCTTCACTTCGCCTCGCCGTTCACTCCCGCGGCCGGCAGCGAA TCGCTCGGCGACGGCAGTCTCGTTTCCCCCTTCGACACAGAGTGGCAGCCTGCCGTCGCT CTCCTCAGAGGCCGTGCTCTCTCTGTCACTCCGTCCCCTTCTTGCCCCGACCTCTCTTCT CCTTCGTCAGTTCTATCCTCTCTTCCATCCTCTCTTCCGTCTTCTTTTTCATCCTCTCTT CCGTCTTCTTTTTCATCCTCTCTTCCGTCTTCTTTTCCGTCTGGATCCGCTCCTTCGCGT GCATCGCACGCGCCCTCGCCGCCTTTCTGTGCGACGGTCGCTGTTGGTCTGGCCTGGGGA ACGGCGGCGCTGCTCCTCGCCTGCGGCACGCGCGGCTTCCGAGCGGCGACTCGGAACGCG AGCATCGCCCTGCGCTTTCCGCGCGTCTCTCTCGGGCAAGGAAAAACCGCTGAACTCCGG AGCCGCGCGGAGGCTGTCCTCTCTGGCCAGCGCGCGCAGGCGGAACTTCTCGCGTCTTTG CTGGGAAACGCGGAAAAGGAAAAGAAACGAGAAGGCGGTGAAAACGAGGCGCAAACCGAA TCGAGGACATCGGACTCGAACGCGACCGTCTCCGACCTTCTTCGCCTCATGAGAAAAGGC GCCTTTCTCACGCCTGAGGAGGCGCAGGATCTGGGCATCATTGACCATATTCTCTAA
  • Download Fasta

  • Fasta :-

    MPTQHPVPLYREGKREGEREEAADDEETWRGVGEFADVLGIPRTRFLHFASPFTPAAGSE SLGDGSLVSPFDTEWQPAVALLRGRALSVTPSPSCPDLSSPSSVLSSLPSSLPSSFSSSL PSSFSSSLPSSFPSGSAPSRASHAPSPPFCATVAVGLAWGTAALLLACGTRGFRAATRNA SIALRFPRVSLGQGKTAELRSRAEAVLSGQRAQAELLASLLGNAEKEKKREGGENEAQTE SRTSDSNATVSDLLRLMRKGAFLTPEEAQDLGIIDHIL

  • title: active site
  • coordinates: G160
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_01323088 SGRALSVTPS0.993unspNCLIV_01323088 SGRALSVTPS0.993unspNCLIV_01323088 SGRALSVTPS0.993unspNCLIV_013230244 SESRTSDSNA0.998unspNCLIV_01323061 SAGSESLGDG0.991unspNCLIV_01323069 SGSLVSPFDT0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India