NCLIV_013610 | Ubiquitin carboxyl-terminal hydrolase, related

UniProt_ID: F0VD53

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0005515 GO:0036459
Computed_GO_Functions: protein binding thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NCLIV_013610	OTHER	0.858382	0.103246	0.038372

No Results

Fasta :-
>NCLIV_013610 MQTVLSVPFGPQVVTSLPLVREKYVALLPALLVSLSASAGMPTADFLLRQSALAAALQSP RYRLQHARRRAAVLKKVARAERGNGDALEETDEVHALEHKIADTDAAKCLAYLETDSVTP QLYRHLVGTLHPEFASSHQQDAEEFFSLLLQWLEDRDREAATRVEEAREQLRAAQSGAAE TVVATDFTEHDVACAENALKRAKIEQLFTFAVEQRIECAETKQVRYSYTRQQILPLPVPL DPEIQQRFEREQREHEEAERRSKKRQKKKEGPGIDKELEDRSSPESTTTVSSENGAGSSS PGGAEASCPPPPEQLPSFTLSECLDSFLSSTLLKDFYSSATGKKGEASKQLRLASFPPYL IVQLKRFFADQNWQAKKLYCPVLVPEELSIAEARGSGLREGEVVMPEESSRRPSAGEAAG AVTAFDEELLTTLQSMGFSENACKRACLAVQGGSPDACVDWLMAHMDDADVNDPLRSESP SSSGTDEAVAMISSMGFTADQAKAGLLAVGPGGDVCSRAADWLLNHMDDLDAAVSSVLAE TEKTQREAEMEDVSALTPLEKARRGLDDNPSGLYKLHGFITHMGKNANSGHYVCHVKRAG KLVLFNDEKVAEAVEPPIDLGYIYVFRRSDIPDEP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_013610.fa Sequence name : NCLIV_013610 Sequence length : 635 VALUES OF COMPUTED PARAMETERS Coef20 : 3.908 CoefTot : 1.390 ChDiff : -28 ZoneTo : 80 KR : 11 DE : 2 CleavSite : 72 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.859 1.888 0.301 0.640 MesoH : -0.346 0.496 -0.299 0.186 MuHd_075 : 29.515 19.817 8.288 7.175 MuHd_095 : 27.778 18.320 7.202 5.821 MuHd_100 : 25.675 19.073 7.309 6.032 MuHd_105 : 38.347 26.369 11.246 8.784 Hmax_075 : 14.262 19.163 -3.555 6.239 Hmax_095 : 11.600 7.612 -0.775 5.198 Hmax_100 : -0.900 8.900 -0.797 2.160 Hmax_105 : 15.167 20.067 3.229 6.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2674 0.7326 DFMC : 0.0928 0.9072 This protein is probably imported in mitochondria. f(Ser) = 0.0875 f(Arg) = 0.1000 CMi = 0.41667 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 635 NCLIV_013610 MQTVLSVPFGPQVVTSLPLVREKYVALLPALLVSLSASAGMPTADFLLRQSALAAALQSPRYRLQHARRRAAVLKKVARA 80 ERGNGDALEETDEVHALEHKIADTDAAKCLAYLETDSVTPQLYRHLVGTLHPEFASSHQQDAEEFFSLLLQWLEDRDREA 160 ATRVEEAREQLRAAQSGAAETVVATDFTEHDVACAENALKRAKIEQLFTFAVEQRIECAETKQVRYSYTRQQILPLPVPL 240 DPEIQQRFEREQREHEEAERRSKKRQKKKEGPGIDKELEDRSSPESTTTVSSENGAGSSSPGGAEASCPPPPEQLPSFTL 320 SECLDSFLSSTLLKDFYSSATGKKGEASKQLRLASFPPYLIVQLKRFFADQNWQAKKLYCPVLVPEELSIAEARGSGLRE 400 GEVVMPEESSRRPSAGEAAGAVTAFDEELLTTLQSMGFSENACKRACLAVQGGSPDACVDWLMAHMDDADVNDPLRSESP 480 SSSGTDEAVAMISSMGFTADQAKAGLLAVGPGGDVCSRAADWLLNHMDDLDAAVSSVLAETEKTQREAEMEDVSALTPLE 560 KARRGLDDNPSGLYKLHGFITHMGKNANSGHYVCHVKRAGKLVLFNDEKVAEAVEPPIDLGYIYVFRRSDIPDEP 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...........................P.................................................... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_013610 21 TSLPLVR|EK 0.083 . NCLIV_013610 23 LPLVREK|YV 0.072 . NCLIV_013610 49 TADFLLR|QS 0.078 . NCLIV_013610 61 AALQSPR|YR 0.075 . NCLIV_013610 63 LQSPRYR|LQ 0.109 . NCLIV_013610 68 YRLQHAR|RR 0.103 . NCLIV_013610 69 RLQHARR|RA 0.140 . NCLIV_013610 70 LQHARRR|AA 0.156 . NCLIV_013610 75 RRAAVLK|KV 0.113 . NCLIV_013610 76 RAAVLKK|VA 0.149 . NCLIV_013610 79 VLKKVAR|AE 0.117 . NCLIV_013610 82 KVARAER|GN 0.431 . NCLIV_013610 100 VHALEHK|IA 0.067 . NCLIV_013610 108 ADTDAAK|CL 0.063 . NCLIV_013610 124 VTPQLYR|HL 0.080 . NCLIV_013610 156 LQWLEDR|DR 0.101 . NCLIV_013610 158 WLEDRDR|EA 0.081 . NCLIV_013610 163 DREAATR|VE 0.086 . NCLIV_013610 168 TRVEEAR|EQ 0.101 . NCLIV_013610 172 EAREQLR|AA 0.101 . NCLIV_013610 200 CAENALK|RA 0.059 . NCLIV_013610 201 AENALKR|AK 0.303 . NCLIV_013610 203 NALKRAK|IE 0.058 . NCLIV_013610 215 TFAVEQR|IE 0.111 . NCLIV_013610 222 IECAETK|QV 0.076 . NCLIV_013610 225 AETKQVR|YS 0.094 . NCLIV_013610 230 VRYSYTR|QQ 0.081 . NCLIV_013610 247 DPEIQQR|FE 0.124 . NCLIV_013610 250 IQQRFER|EQ 0.308 . NCLIV_013610 253 RFEREQR|EH 0.281 . NCLIV_013610 260 EHEEAER|RS 0.068 . NCLIV_013610 261 HEEAERR|SK 0.183 . NCLIV_013610 263 EAERRSK|KR 0.108 . NCLIV_013610 264 AERRSKK|RQ 0.392 . NCLIV_013610 265 ERRSKKR|QK 0.432 . NCLIV_013610 267 RSKKRQK|KK 0.075 . NCLIV_013610 268 SKKRQKK|KE 0.542 *ProP* NCLIV_013610 269 KKRQKKK|EG 0.129 . NCLIV_013610 276 EGPGIDK|EL 0.057 . NCLIV_013610 281 DKELEDR|SS 0.109 . NCLIV_013610 334 LSSTLLK|DF 0.081 . NCLIV_013610 343 YSSATGK|KG 0.075 . NCLIV_013610 344 SSATGKK|GE 0.100 . NCLIV_013610 349 KKGEASK|QL 0.064 . NCLIV_013610 352 EASKQLR|LA 0.103 . NCLIV_013610 365 YLIVQLK|RF 0.069 . NCLIV_013610 366 LIVQLKR|FF 0.257 . NCLIV_013610 376 DQNWQAK|KL 0.066 . NCLIV_013610 377 QNWQAKK|LY 0.113 . NCLIV_013610 394 LSIAEAR|GS 0.136 . NCLIV_013610 399 ARGSGLR|EG 0.090 . NCLIV_013610 411 MPEESSR|RP 0.120 . NCLIV_013610 412 PEESSRR|PS 0.112 . NCLIV_013610 444 FSENACK|RA 0.065 . NCLIV_013610 445 SENACKR|AC 0.265 . NCLIV_013610 476 DVNDPLR|SE 0.111 . NCLIV_013610 503 FTADQAK|AG 0.060 . NCLIV_013610 518 GGDVCSR|AA 0.121 . NCLIV_013610 543 VLAETEK|TQ 0.065 . NCLIV_013610 546 ETEKTQR|EA 0.098 . NCLIV_013610 561 ALTPLEK|AR 0.058 . NCLIV_013610 563 TPLEKAR|RG 0.098 . NCLIV_013610 564 PLEKARR|GL 0.178 . NCLIV_013610 575 NPSGLYK|LH 0.085 . NCLIV_013610 585 FITHMGK|NA 0.064 . NCLIV_013610 597 HYVCHVK|RA 0.070 . NCLIV_013610 598 YVCHVKR|AG 0.156 . NCLIV_013610 601 HVKRAGK|LV 0.116 . NCLIV_013610 609 VLFNDEK|VA 0.074 . NCLIV_013610 627 GYIYVFR|RS 0.074 . NCLIV_013610 628 YIYVFRR|SD 0.289 . ____________________________^_________________

Fasta :-
>NCLIV_013610 ATGCAGACTGTTCTTTCTGTTCCGTTTGGGCCTCAGGTTGTAACGTCTCTTCCGCTGGTT CGGGAGAAGTACGTGGCTCTGCTGCCTGCGCTTCTCGTTTCTCTGTCTGCGTCTGCGGGC ATGCCGACTGCGGATTTCCTTCTCCGGCAAAGCGCCCTCGCGGCCGCGCTTCAGTCGCCG CGCTACCGACTCCAGCACGCGCGGCGTAGGGCCGCGGTGTTGAAGAAAGTTGCGCGCGCG GAGCGAGGCAACGGAGACGCCCTCGAAGAGACAGATGAAGTGCACGCCTTGGAGCACAAG ATCGCCGATACAGACGCCGCAAAATGTCTGGCGTATCTGGAGACGGACAGCGTGACGCCT CAGCTGTATCGACACCTGGTGGGAACGCTTCATCCGGAATTCGCGTCCTCGCACCAGCAA GATGCAGAAGAGTTTTTCTCTCTTCTCCTTCAGTGGCTGGAGGACCGAGACCGCGAGGCG GCGACGCGCGTCGAGGAGGCCCGAGAGCAGCTGCGGGCCGCGCAGAGCGGCGCGGCGGAG ACAGTTGTTGCTACAGACTTCACAGAGCACGACGTTGCATGCGCAGAAAATGCGCTGAAA AGAGCCAAGATTGAGCAACTCTTCACCTTCGCCGTCGAGCAGCGCATCGAATGTGCAGAG ACGAAGCAAGTGCGGTACTCGTACACTCGGCAGCAAATTCTCCCCCTTCCGGTCCCTTTG GATCCGGAGATTCAACAGCGCTTCGAGCGCGAACAGCGCGAACACGAAGAGGCGGAACGC CGGTCGAAAAAGCGACAGAAAAAGAAAGAAGGTCCAGGGATCGACAAGGAACTGGAAGAC CGTTCTTCGCCAGAGTCCACAACCACTGTCAGCAGTGAAAATGGGGCGGGGAGTTCTTCG CCTGGAGGCGCGGAAGCGTCGTGCCCGCCTCCTCCGGAGCAACTTCCTTCCTTTACGCTC TCCGAGTGTCTAGACAGCTTTCTGTCTTCCACGCTTTTAAAGGATTTCTACTCGTCAGCG ACAGGGAAAAAAGGCGAGGCCTCCAAGCAACTGCGGCTAGCCTCGTTTCCGCCGTACTTG ATCGTTCAACTGAAGCGCTTCTTTGCAGATCAAAACTGGCAAGCTAAGAAGCTCTACTGC CCCGTCTTGGTTCCCGAAGAATTGAGCATCGCCGAGGCACGAGGTTCCGGTCTCAGAGAG GGCGAAGTGGTGATGCCCGAGGAGTCGAGTCGGCGACCGTCTGCAGGCGAAGCTGCCGGC GCTGTCACTGCGTTTGACGAGGAACTCCTCACCACGCTGCAGTCCATGGGATTTTCGGAA AATGCGTGCAAGCGAGCTTGCCTGGCCGTTCAGGGCGGCAGTCCAGATGCATGCGTGGAC TGGTTGATGGCGCACATGGACGACGCGGACGTGAACGATCCGTTGCGCTCTGAGTCGCCG TCTTCGTCTGGGACTGACGAAGCTGTCGCGATGATTTCGTCCATGGGCTTCACGGCCGAC CAGGCGAAGGCGGGGCTGTTGGCTGTCGGACCTGGCGGCGACGTGTGCTCGCGAGCAGCA GACTGGCTGCTGAATCACATGGACGACTTGGACGCAGCCGTCTCGTCCGTGCTGGCCGAG ACAGAGAAGACGCAGCGGGAAGCAGAGATGGAAGACGTGTCGGCGCTCACGCCGCTTGAG AAGGCTCGGCGGGGTTTGGACGACAACCCGAGTGGCCTATACAAACTCCACGGCTTTATC ACACACATGGGGAAGAACGCCAACTCGGGGCACTACGTGTGTCACGTCAAGAGGGCGGGG AAACTCGTTCTTTTCAACGACGAAAAGGTCGCCGAAGCGGTGGAGCCGCCCATCGACCTT GGATACATCTACGTCTTCCGACGTTCAGATATCCCTGATGAGCCTTGA
Download Fasta

Fasta :-

MQTVLSVPFGPQVVTSLPLVREKYVALLPALLVSLSASAGMPTADFLLRQSALAAALQSP RYRLQHARRRAAVLKKVARAERGNGDALEETDEVHALEHKIADTDAAKCLAYLETDSVTP QLYRHLVGTLHPEFASSHQQDAEEFFSLLLQWLEDRDREAATRVEEAREQLRAAQSGAAE TVVATDFTEHDVACAENALKRAKIEQLFTFAVEQRIECAETKQVRYSYTRQQILPLPVPL DPEIQQRFEREQREHEEAERRSKKRQKKKEGPGIDKELEDRSSPESTTTVSSENGAGSSS PGGAEASCPPPPEQLPSFTLSECLDSFLSSTLLKDFYSSATGKKGEASKQLRLASFPPYL IVQLKRFFADQNWQAKKLYCPVLVPEELSIAEARGSGLREGEVVMPEESSRRPSAGEAAG AVTAFDEELLTTLQSMGFSENACKRACLAVQGGSPDACVDWLMAHMDDADVNDPLRSESP SSSGTDEAVAMISSMGFTADQAKAGLLAVGPGGDVCSRAADWLLNHMDDLDAAVSSVLAE TEKTQREAEMEDVSALTPLEKARRGLDDNPSGLYKLHGFITHMGKNANSGHYVCHVKRAG KLVLFNDEKVAEAVEPPIDLGYIYVFRRSDIPDEP

Ubiquitin carboxyl-terminal hydrolase, UCH

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NCLIV_013610	283 S	EDRSSPEST	0.998	unsp	NCLIV_013610	283 S	EDRSSPEST	0.998	unsp	NCLIV_013610	283 S	EDRSSPEST	0.998	unsp	NCLIV_013610	414 S	SRRPSAGEA	0.998	unsp	NCLIV_013610	479 S	LRSESPSSS	0.996	unsp	NCLIV_013610	481 S	SESPSSSGT	0.995	unsp	NCLIV_013610	483 S	SPSSSGTDE	0.996	unsp	NCLIV_013610	544 T	ETEKTQREA	0.993	unsp	NCLIV_013610	227 S	QVRYSYTRQ	0.996	unsp	NCLIV_013610	262 S	AERRSKKRQ	0.998	unsp

NCLIV_013610 | Ubiquitin carboxyl-terminal hydrolase, related

ID's

UniProt_ID: F0VD53

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0005515 GO:0036459

Computed_GO_Functions: protein binding thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ubiquitin carboxyl-terminal hydrolase, UCH

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India