NCLIV_013780 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
NCLIV_013780OTHER0.9991880.0002330.000579
No Results

  • Fasta :-

    >NCLIV_013780 MAGDGEYSFSLTTFSPSGKLVQIEYALNRVQQGAPALGIKAKNGVVIAAEKKLTTPLIEE ASVRKVEHFTPNIGCVCAGMPADFRVVMKKGRKEAAAYNLFYKTPISVSQLVQDVAAVMQ EYTQSGGVRPFGLSLLVAGYDEYGPQLYQVDPSGAYFGWKASAIGRDMQNAKTFLEKRYN PDIELEDAIHTAILTLKEGFEGAMNEHNIEIGVVGEDRKFRILTPAEIKDYLGEVE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_013780.fa Sequence name : NCLIV_013780 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.483 CoefTot : -0.109 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.629 1.082 0.048 0.411 MesoH : -0.461 0.261 -0.354 0.213 MuHd_075 : 0.924 3.916 0.756 0.645 MuHd_095 : 6.453 3.126 0.641 1.468 MuHd_100 : 4.939 1.492 0.568 0.176 MuHd_105 : 8.255 5.993 1.918 1.393 Hmax_075 : 15.167 6.417 1.064 3.687 Hmax_095 : 10.938 2.900 0.746 3.160 Hmax_100 : 11.900 3.100 0.746 3.160 Hmax_105 : 12.100 3.800 0.669 2.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9660 0.0340 DFMC : 0.9669 0.0331
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 NCLIV_013780 MAGDGEYSFSLTTFSPSGKLVQIEYALNRVQQGAPALGIKAKNGVVIAAEKKLTTPLIEEASVRKVEHFTPNIGCVCAGM 80 PADFRVVMKKGRKEAAAYNLFYKTPISVSQLVQDVAAVMQEYTQSGGVRPFGLSLLVAGYDEYGPQLYQVDPSGAYFGWK 160 ASAIGRDMQNAKTFLEKRYNPDIELEDAIHTAILTLKEGFEGAMNEHNIEIGVVGEDRKFRILTPAEIKDYLGEVE 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_013780 19 TFSPSGK|LV 0.084 . NCLIV_013780 29 IEYALNR|VQ 0.076 . NCLIV_013780 40 APALGIK|AK 0.068 . NCLIV_013780 42 ALGIKAK|NG 0.069 . NCLIV_013780 51 VVIAAEK|KL 0.057 . NCLIV_013780 52 VIAAEKK|LT 0.093 . NCLIV_013780 64 IEEASVR|KV 0.137 . NCLIV_013780 65 EEASVRK|VE 0.071 . NCLIV_013780 85 GMPADFR|VV 0.115 . NCLIV_013780 89 DFRVVMK|KG 0.068 . NCLIV_013780 90 FRVVMKK|GR 0.110 . NCLIV_013780 92 VVMKKGR|KE 0.094 . NCLIV_013780 93 VMKKGRK|EA 0.080 . NCLIV_013780 103 AYNLFYK|TP 0.061 . NCLIV_013780 129 TQSGGVR|PF 0.129 . NCLIV_013780 160 GAYFGWK|AS 0.081 . NCLIV_013780 166 KASAIGR|DM 0.122 . NCLIV_013780 172 RDMQNAK|TF 0.066 . NCLIV_013780 177 AKTFLEK|RY 0.064 . NCLIV_013780 178 KTFLEKR|YN 0.191 . NCLIV_013780 197 TAILTLK|EG 0.066 . NCLIV_013780 218 GVVGEDR|KF 0.083 . NCLIV_013780 219 VVGEDRK|FR 0.066 . NCLIV_013780 221 GEDRKFR|IL 0.358 . NCLIV_013780 229 LTPAEIK|DY 0.062 . ____________________________^_________________

  • Fasta :-

    >NCLIV_013780 ATGGCAGGCGACGGCGAGTACAGTTTCAGTCTCACCACCTTCTCCCCCAGTGGGAAGTTG GTTCAGATCGAGTACGCGCTCAACCGCGTGCAGCAAGGAGCGCCGGCTTTGGGAATCAAA GCCAAGAACGGAGTCGTCATCGCTGCAGAAAAAAAACTGACCACTCCCCTCATCGAGGAG GCCTCAGTCCGGAAAGTCGAACACTTCACACCCAACATCGGCTGCGTCTGTGCGGGCATG CCCGCCGACTTCCGCGTGGTGATGAAAAAGGGTAGAAAGGAGGCTGCTGCGTATAACTTG TTCTACAAGACGCCCATTTCTGTCAGCCAACTGGTGCAAGACGTCGCAGCTGTGATGCAG GAGTACACGCAGTCCGGTGGTGTTCGGCCGTTTGGTCTGTCTCTCCTCGTCGCCGGCTAC GACGAGTACGGCCCCCAGCTGTACCAGGTGGATCCGAGTGGCGCCTATTTCGGATGGAAG GCTTCTGCGATTGGCCGTGACATGCAGAATGCAAAGACTTTTCTGGAAAAGCGGTACAAC CCAGATATCGAACTGGAAGACGCGATTCACACCGCCATTTTGACGCTCAAGGAAGGCTTT GAAGGAGCAATGAACGAGCACAACATTGAAATCGGTGTCGTAGGGGAGGACCGCAAATTC CGCATTCTGACTCCGGCGGAAATCAAGGACTACTTGGGAGAGGTTGAGTAA
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  • Fasta :-

    MAGDGEYSFSLTTFSPSGKLVQIEYALNRVQQGAPALGIKAKNGVVIAAEKKLTTPLIEE ASVRKVEHFTPNIGCVCAGMPADFRVVMKKGRKEAAAYNLFYKTPISVSQLVQDVAAVMQ EYTQSGGVRPFGLSLLVAGYDEYGPQLYQVDPSGAYFGWKASAIGRDMQNAKTFLEKRYN PDIELEDAIHTAILTLKEGFEGAMNEHNIEIGVVGEDRKFRILTPAEIKDYLGEVE

  • title: active site
  • coordinates: A34,E50,K52,K65,R166
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India