NCLIV_0169 | hydrolase, alpha/beta fold family domain-containing protein

UniProt_ID: F0VDW3

Computed_GO_Component_IDs:
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Curated_GO_Component_IDs:
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	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NCLIV_0169	OTHER	0.904299	0.003524	0.092178

No Results

Fasta :-
>NCLIV_0169 MQASSVSPSLSSVSLRSLSTSASSPGGALRAEGSEEDGRESVCGLSPDAPALAYQVLESR ARPVRRDAPALLVVHGLLGSKRNMRSFAALLNSPKIVAVDLRNHGESPWRDSMRVSDLGH DLVHMLHSKPDLFSPPSSLSPLSSSLDSSGAVPRSAGDVVLIGHSLGGLAAMYAALQAPR HACGTGTECTRVKGLVVLDIAPADYSQSRHDAQPITSKQVVSILCDLPMSAFDDKLQLER TLGATDPPLPPAMVKWLMTAVKERREKKPASSPWRETGRPSRTADKTLKKDEKVALAWEM NLQAIKRMLQTKQLRWPSEDFGSRGASDGSVDSPDNETVEREATEGEASGGEGNAGGEKH TRAVFDGPVLFVKGANSQYVDLKRDWEAILRYFPRAKHRTVQNAGHWLHAEQPVQTAEFI NEFLQQL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_0169.fa Sequence name : NCLIV_0169 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.935 CoefTot : 1.505 ChDiff : 0 ZoneTo : 31 KR : 2 DE : 0 CleavSite : 32 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.565 1.582 0.192 0.655 MesoH : -0.031 0.437 -0.175 0.236 MuHd_075 : 29.414 17.034 6.781 6.600 MuHd_095 : 19.392 18.610 5.130 5.824 MuHd_100 : 26.184 15.847 5.577 6.404 MuHd_105 : 28.775 19.156 6.270 7.504 Hmax_075 : 11.200 9.567 2.114 4.200 Hmax_095 : 12.600 16.200 2.717 4.660 Hmax_100 : 11.400 10.400 1.726 4.340 Hmax_105 : 13.300 15.633 2.277 5.437 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1761 0.8239 DFMC : 0.1758 0.8242 This protein is probably imported in chloroplast. f(Ser) = 0.3871 f(Arg) = 0.0645 CMi = 2.41449 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 NCLIV_0169 MQASSVSPSLSSVSLRSLSTSASSPGGALRAEGSEEDGRESVCGLSPDAPALAYQVLESRARPVRRDAPALLVVHGLLGS 80 KRNMRSFAALLNSPKIVAVDLRNHGESPWRDSMRVSDLGHDLVHMLHSKPDLFSPPSSLSPLSSSLDSSGAVPRSAGDVV 160 LIGHSLGGLAAMYAALQAPRHACGTGTECTRVKGLVVLDIAPADYSQSRHDAQPITSKQVVSILCDLPMSAFDDKLQLER 240 TLGATDPPLPPAMVKWLMTAVKERREKKPASSPWRETGRPSRTADKTLKKDEKVALAWEMNLQAIKRMLQTKQLRWPSED 320 FGSRGASDGSVDSPDNETVEREATEGEASGGEGNAGGEKHTRAVFDGPVLFVKGANSQYVDLKRDWEAILRYFPRAKHRT 400 VQNAGHWLHAEQPVQTAEFINEFLQQL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_0169 16 LSSVSLR|SL 0.332 . NCLIV_0169 30 SPGGALR|AE 0.130 . NCLIV_0169 39 GSEEDGR|ES 0.078 . NCLIV_0169 60 YQVLESR|AR 0.067 . NCLIV_0169 62 VLESRAR|PV 0.106 . NCLIV_0169 65 SRARPVR|RD 0.299 . NCLIV_0169 66 RARPVRR|DA 0.353 . NCLIV_0169 81 HGLLGSK|RN 0.054 . NCLIV_0169 82 GLLGSKR|NM 0.118 . NCLIV_0169 85 GSKRNMR|SF 0.471 . NCLIV_0169 95 ALLNSPK|IV 0.073 . NCLIV_0169 102 IVAVDLR|NH 0.107 . NCLIV_0169 110 HGESPWR|DS 0.099 . NCLIV_0169 114 PWRDSMR|VS 0.120 . NCLIV_0169 129 VHMLHSK|PD 0.060 . NCLIV_0169 154 SSGAVPR|SA 0.383 . NCLIV_0169 180 AALQAPR|HA 0.100 . NCLIV_0169 191 TGTECTR|VK 0.082 . NCLIV_0169 193 TECTRVK|GL 0.065 . NCLIV_0169 209 ADYSQSR|HD 0.096 . NCLIV_0169 218 AQPITSK|QV 0.075 . NCLIV_0169 235 MSAFDDK|LQ 0.058 . NCLIV_0169 240 DKLQLER|TL 0.083 . NCLIV_0169 255 LPPAMVK|WL 0.073 . NCLIV_0169 262 WLMTAVK|ER 0.064 . NCLIV_0169 264 MTAVKER|RE 0.089 . NCLIV_0169 265 TAVKERR|EK 0.127 . NCLIV_0169 267 VKERREK|KP 0.096 . NCLIV_0169 268 KERREKK|PA 0.394 . NCLIV_0169 275 PASSPWR|ET 0.121 . NCLIV_0169 279 PWRETGR|PS 0.114 . NCLIV_0169 282 ETGRPSR|TA 0.367 . NCLIV_0169 286 PSRTADK|TL 0.067 . NCLIV_0169 289 TADKTLK|KD 0.067 . NCLIV_0169 290 ADKTLKK|DE 0.122 . NCLIV_0169 293 TLKKDEK|VA 0.074 . NCLIV_0169 306 MNLQAIK|RM 0.053 . NCLIV_0169 307 NLQAIKR|ML 0.218 . NCLIV_0169 312 KRMLQTK|QL 0.073 . NCLIV_0169 315 LQTKQLR|WP 0.090 . NCLIV_0169 324 SEDFGSR|GA 0.129 . NCLIV_0169 341 DNETVER|EA 0.135 . NCLIV_0169 359 GNAGGEK|HT 0.075 . NCLIV_0169 362 GGEKHTR|AV 0.193 . NCLIV_0169 373 GPVLFVK|GA 0.078 . NCLIV_0169 383 SQYVDLK|RD 0.063 . NCLIV_0169 384 QYVDLKR|DW 0.334 . NCLIV_0169 391 DWEAILR|YF 0.074 . NCLIV_0169 395 ILRYFPR|AK 0.120 . NCLIV_0169 397 RYFPRAK|HR 0.067 . NCLIV_0169 399 FPRAKHR|TV 0.209 . ____________________________^_________________

Fasta :-
>NCLIV_0169 ATGCAGGCTTCATCCGTGTCTCCTTCCCTCTCGTCTGTCTCCTTGCGGTCTCTTTCTACG TCCGCGAGCTCTCCTGGGGGCGCCCTCCGAGCAGAAGGTTCTGAAGAAGACGGGCGAGAA AGCGTGTGCGGCCTCTCCCCCGATGCACCCGCTTTGGCGTATCAAGTCCTCGAGAGCCGC GCGAGACCGGTGCGCCGCGACGCGCCTGCGCTCCTTGTCGTCCACGGCCTTCTGGGCAGC AAGCGCAACATGCGGAGTTTCGCCGCTCTTTTAAATTCCCCAAAAATCGTCGCTGTCGAC TTGCGAAACCACGGCGAGTCGCCGTGGAGAGACAGCATGCGCGTCTCCGATCTCGGCCAC GACCTCGTCCACATGCTCCACTCGAAGCCCGATCTCTTCTCTCCGCCTTCGTCTCTGTCG CCTCTCTCTTCTTCGCTGGATTCCTCGGGCGCCGTGCCTCGCAGCGCTGGAGACGTCGTG TTGATCGGCCATAGTTTGGGGGGGTTAGCCGCCATGTATGCAGCTCTGCAGGCGCCTCGG CATGCGTGTGGAACGGGGACAGAGTGCACGCGGGTGAAAGGTCTGGTGGTGCTGGACATT GCTCCAGCGGACTACTCTCAGTCCCGGCACGACGCGCAGCCGATCACCTCGAAGCAGGTG GTGAGCATTCTTTGCGACTTGCCGATGAGTGCGTTCGACGACAAGCTCCAGCTGGAGCGA ACCTTGGGAGCAACGGATCCACCCTTGCCGCCTGCAATGGTCAAGTGGCTGATGACTGCT GTGAAGGAGAGGCGCGAGAAGAAGCCTGCATCCAGTCCCTGGAGAGAGACCGGGAGGCCG TCGCGCACTGCGGACAAAACTCTCAAGAAAGACGAAAAAGTCGCGCTCGCGTGGGAAATG AATCTCCAAGCAATCAAGCGCATGCTCCAGACCAAACAGCTGAGGTGGCCAAGCGAAGAC TTTGGCAGCCGAGGCGCCTCAGACGGGAGTGTCGACTCCCCTGACAACGAGACCGTCGAA CGTGAAGCAACCGAAGGCGAAGCCAGCGGAGGTGAAGGAAACGCAGGTGGTGAGAAGCAC ACGCGCGCTGTGTTTGACGGGCCCGTGTTGTTTGTTAAAGGCGCAAACTCGCAGTATGTG GATCTGAAGCGGGACTGGGAAGCCATTCTGCGCTACTTCCCGAGGGCGAAACACAGGACT GTCCAGAACGCGGGGCACTGGCTGCATGCGGAGCAGCCGGTCCAAACGGCAGAGTTCATC AACGAGTTCCTCCAGCAACTGTGA
Download Fasta

Fasta :-

MQASSVSPSLSSVSLRSLSTSASSPGGALRAEGSEEDGRESVCGLSPDAPALAYQVLESR ARPVRRDAPALLVVHGLLGSKRNMRSFAALLNSPKIVAVDLRNHGESPWRDSMRVSDLGH DLVHMLHSKPDLFSPPSSLSPLSSSLDSSGAVPRSAGDVVLIGHSLGGLAAMYAALQAPR HACGTGTECTRVKGLVVLDIAPADYSQSRHDAQPITSKQVVSILCDLPMSAFDDKLQLER TLGATDPPLPPAMVKWLMTAVKERREKKPASSPWRETGRPSRTADKTLKKDEKVALAWEM NLQAIKRMLQTKQLRWPSEDFGSRGASDGSVDSPDNETVEREATEGEASGGEGNAGGEKH TRAVFDGPVLFVKGANSQYVDLKRDWEAILRYFPRAKHRTVQNAGHWLHAEQPVQTAEFI NEFLQQL

Hypothetical protein VC1974

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NCLIV_0169	T	20	0.592	0.055	NCLIV_0169	T	338	0.540	0.030	NCLIV_0169	S	5	0.514	0.066	NCLIV_0169	S	11	0.514	0.061	NCLIV_0169	S	9	0.513	0.344	NCLIV_0169	T	259	0.512	0.052	NCLIV_0169	S	4	0.510	0.030	NCLIV_0169	S	7	0.502	0.079

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NCLIV_0169	T	20	0.592	0.055	NCLIV_0169	T	338	0.540	0.030	NCLIV_0169	S	5	0.514	0.066	NCLIV_0169	S	11	0.514	0.061	NCLIV_0169	S	9	0.513	0.344	NCLIV_0169	T	259	0.512	0.052	NCLIV_0169	S	4	0.510	0.030	NCLIV_0169	S	7	0.502	0.079

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NCLIV_0169	34 S	RAEGSEEDG	0.996	unsp	NCLIV_0169	34 S	RAEGSEEDG	0.996	unsp	NCLIV_0169	34 S	RAEGSEEDG	0.996	unsp	NCLIV_0169	107 S	NHGESPWRD	0.99	unsp	NCLIV_0169	112 S	PWRDSMRVS	0.995	unsp	NCLIV_0169	272 S	KPASSPWRE	0.99	unsp	NCLIV_0169	277 T	PWRETGRPS	0.991	unsp	NCLIV_0169	281 S	TGRPSRTAD	0.993	unsp	NCLIV_0169	19 S	LRSLSTSAS	0.992	unsp	NCLIV_0169	24 S	TSASSPGGA	0.995	unsp

NCLIV_0169 | hydrolase, alpha/beta fold family domain-containing protein

ID's

UniProt_ID: F0VDW3

GEO Functions

Computed_GO_Component_IDs:

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Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Hypothetical protein VC1974

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India