NCLIV_017720 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
NCLIV_017720OTHER0.7846970.1927260.022577
No Results

  • Fasta :-

    >NCLIV_017720 MLFVFAVFSPPLSDRLFSGALPAQASSSSVFPSPSSLPRSLSNDAADVGREIPDTRGAAM RDETQVAKEDIFPPASGVVPAPGMKASDLQKTTPAVDLLGLPVKEKVFRARLYGSMFSYA YYFLDILVGTPPQRASVILDTGSSLLAFPCAGCSECGEHLDPAMDTSRSATGEWIDCKEE ERCFGTCSGGTPLGGLGGGGVSSMRRCMYTQTYSEGSAIRGIYFSDVVALGEVEQKNPPV RYDFVGCHTQETNLFVTQKAAGIFGISFPKGHRQPTLLDVMFGHANLVAQKMFSVCISED GGLLTVGGYEPTLLVAPPMDQSTPAVHAWRPAASEAESVSAREIADEGTSPHHASLLTWT SIISHSTYRVPLSGMEVEGLVLGNGVDDFGNTMVDSGTTYSYFPPAVFARWRSFLSRFCT PELFCERERDGRPCWRVSPGTELSSIFPPIKVSFGDDQNSQVWWWPEGYLYRRTGGYFCD GLDDNKVGASVLGLSFFKNKQVLFDREHDRVGFAAAKCPSFFLDQRPRGPDSDDGSKGRP TAPFTVAPFPVLVPMDRGSVPGGAKQSDGLPFSPRQIWVAALLVVVAILVAVTVILLHTI KRSSTGTAVAPAPSSVPSLPFAPASKSAGRFVRGLGQGALGVSNQVYVQRTQRYREVEEA QPHTADAYYDVEEDRFTGVDGDFFVDDTALSSVEREATAALPPLSLQGHDESAFSASQPT LLDLPLGGEEDEHVGAACSP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_017720.fa Sequence name : NCLIV_017720 Sequence length : 740 VALUES OF COMPUTED PARAMETERS Coef20 : 4.349 CoefTot : 0.615 ChDiff : -24 ZoneTo : 43 KR : 2 DE : 1 CleavSite : 49 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.459 3.406 0.594 0.983 MesoH : 0.531 0.965 -0.057 0.381 MuHd_075 : 32.826 25.404 8.034 7.828 MuHd_095 : 24.821 17.384 6.190 5.810 MuHd_100 : 23.291 19.264 6.339 6.580 MuHd_105 : 22.374 18.471 5.778 6.719 Hmax_075 : 16.917 19.600 2.994 6.673 Hmax_095 : 17.063 9.100 1.491 3.280 Hmax_100 : 12.100 10.600 1.491 4.560 Hmax_105 : 14.350 14.233 2.128 5.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9478 0.0522 DFMC : 0.9423 0.0577
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 740 NCLIV_017720 MLFVFAVFSPPLSDRLFSGALPAQASSSSVFPSPSSLPRSLSNDAADVGREIPDTRGAAMRDETQVAKEDIFPPASGVVP 80 APGMKASDLQKTTPAVDLLGLPVKEKVFRARLYGSMFSYAYYFLDILVGTPPQRASVILDTGSSLLAFPCAGCSECGEHL 160 DPAMDTSRSATGEWIDCKEEERCFGTCSGGTPLGGLGGGGVSSMRRCMYTQTYSEGSAIRGIYFSDVVALGEVEQKNPPV 240 RYDFVGCHTQETNLFVTQKAAGIFGISFPKGHRQPTLLDVMFGHANLVAQKMFSVCISEDGGLLTVGGYEPTLLVAPPMD 320 QSTPAVHAWRPAASEAESVSAREIADEGTSPHHASLLTWTSIISHSTYRVPLSGMEVEGLVLGNGVDDFGNTMVDSGTTY 400 SYFPPAVFARWRSFLSRFCTPELFCERERDGRPCWRVSPGTELSSIFPPIKVSFGDDQNSQVWWWPEGYLYRRTGGYFCD 480 GLDDNKVGASVLGLSFFKNKQVLFDREHDRVGFAAAKCPSFFLDQRPRGPDSDDGSKGRPTAPFTVAPFPVLVPMDRGSV 560 PGGAKQSDGLPFSPRQIWVAALLVVVAILVAVTVILLHTIKRSSTGTAVAPAPSSVPSLPFAPASKSAGRFVRGLGQGAL 640 GVSNQVYVQRTQRYREVEEAQPHTADAYYDVEEDRFTGVDGDFFVDDTALSSVEREATAALPPLSLQGHDESAFSASQPT 720 LLDLPLGGEEDEHVGAACSP 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................P....... 640 ................................................................................ 720 .................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_017720 15 SPPLSDR|LF 0.126 . NCLIV_017720 39 SPSSLPR|SL 0.212 . NCLIV_017720 50 DAADVGR|EI 0.107 . NCLIV_017720 56 REIPDTR|GA 0.098 . NCLIV_017720 61 TRGAAMR|DE 0.170 . NCLIV_017720 68 DETQVAK|ED 0.057 . NCLIV_017720 85 VPAPGMK|AS 0.068 . NCLIV_017720 91 KASDLQK|TT 0.069 . NCLIV_017720 104 LLGLPVK|EK 0.054 . NCLIV_017720 106 GLPVKEK|VF 0.065 . NCLIV_017720 109 VKEKVFR|AR 0.085 . NCLIV_017720 111 EKVFRAR|LY 0.124 . NCLIV_017720 134 VGTPPQR|AS 0.072 . NCLIV_017720 168 PAMDTSR|SA 0.174 . NCLIV_017720 178 GEWIDCK|EE 0.067 . NCLIV_017720 182 DCKEEER|CF 0.094 . NCLIV_017720 205 GGVSSMR|RC 0.078 . NCLIV_017720 206 GVSSMRR|CM 0.211 . NCLIV_017720 220 SEGSAIR|GI 0.097 . NCLIV_017720 236 LGEVEQK|NP 0.056 . NCLIV_017720 241 QKNPPVR|YD 0.143 . NCLIV_017720 259 NLFVTQK|AA 0.092 . NCLIV_017720 270 FGISFPK|GH 0.060 . NCLIV_017720 273 SFPKGHR|QP 0.068 . NCLIV_017720 291 ANLVAQK|MF 0.065 . NCLIV_017720 330 PAVHAWR|PA 0.101 . NCLIV_017720 342 AESVSAR|EI 0.185 . NCLIV_017720 369 ISHSTYR|VP 0.084 . NCLIV_017720 410 PPAVFAR|WR 0.114 . NCLIV_017720 412 AVFARWR|SF 0.116 . NCLIV_017720 417 WRSFLSR|FC 0.195 . NCLIV_017720 427 PELFCER|ER 0.067 . NCLIV_017720 429 LFCERER|DG 0.090 . NCLIV_017720 432 ERERDGR|PC 0.218 . NCLIV_017720 436 DGRPCWR|VS 0.084 . NCLIV_017720 451 SIFPPIK|VS 0.060 . NCLIV_017720 472 PEGYLYR|RT 0.120 . NCLIV_017720 473 EGYLYRR|TG 0.109 . NCLIV_017720 486 DGLDDNK|VG 0.054 . NCLIV_017720 498 LGLSFFK|NK 0.056 . NCLIV_017720 500 LSFFKNK|QV 0.077 . NCLIV_017720 506 KQVLFDR|EH 0.098 . NCLIV_017720 510 FDREHDR|VG 0.096 . NCLIV_017720 517 VGFAAAK|CP 0.063 . NCLIV_017720 526 SFFLDQR|PR 0.078 . NCLIV_017720 528 FLDQRPR|GP 0.083 . NCLIV_017720 537 DSDDGSK|GR 0.059 . NCLIV_017720 539 DDGSKGR|PT 0.098 . NCLIV_017720 557 VLVPMDR|GS 0.091 . NCLIV_017720 565 SVPGGAK|QS 0.062 . NCLIV_017720 575 GLPFSPR|QI 0.108 . NCLIV_017720 601 ILLHTIK|RS 0.066 . NCLIV_017720 602 LLHTIKR|SS 0.324 . NCLIV_017720 626 PFAPASK|SA 0.100 . NCLIV_017720 630 ASKSAGR|FV 0.161 . NCLIV_017720 633 SAGRFVR|GL 0.629 *ProP* NCLIV_017720 650 NQVYVQR|TQ 0.088 . NCLIV_017720 653 YVQRTQR|YR 0.318 . NCLIV_017720 655 QRTQRYR|EV 0.201 . NCLIV_017720 675 YDVEEDR|FT 0.120 . NCLIV_017720 695 ALSSVER|EA 0.145 . ____________________________^_________________

  • Fasta :-

    >NCLIV_017720 ATGCTCTTCGTCTTCGCCGTCTTCTCGCCCCCTCTCTCCGACCGCCTCTTTTCCGGCGCT CTTCCAGCGCAAGCGTCGTCTTCCTCCGTCTTCCCCTCGCCCTCTTCCCTCCCGCGTTCT CTCTCGAATGACGCCGCCGACGTGGGGCGCGAAATCCCCGACACGCGCGGCGCGGCAATG AGAGACGAAACGCAAGTAGCCAAGGAAGATATTTTTCCACCGGCTTCAGGTGTGGTCCCC GCGCCCGGCATGAAGGCCAGCGATCTGCAGAAGACAACACCCGCGGTGGATCTCCTCGGT TTACCCGTCAAAGAGAAAGTCTTCAGAGCACGGCTCTACGGCAGCATGTTCAGCTACGCC TACTACTTCCTCGACATTCTCGTGGGCACTCCTCCGCAACGCGCCTCCGTCATTCTCGAC ACTGGAAGTTCTCTCCTAGCTTTCCCTTGCGCAGGCTGCAGCGAATGCGGTGAGCATCTC GACCCTGCCATGGACACGAGCCGAAGCGCGACGGGCGAGTGGATTGATTGCAAAGAGGAA GAAAGATGCTTCGGCACCTGCAGTGGAGGCACGCCGCTTGGTGGCTTGGGGGGCGGCGGC GTGAGCAGCATGCGGAGGTGTATGTACACTCAAACGTACAGCGAGGGCAGCGCGATTCGC GGCATCTACTTCTCAGACGTCGTAGCACTCGGCGAAGTGGAGCAGAAGAACCCGCCTGTC AGATACGACTTTGTCGGGTGCCATACACAGGAAACGAATTTGTTTGTCACGCAGAAGGCA GCAGGGATTTTCGGAATTTCCTTCCCGAAGGGACACCGGCAGCCGACTCTGTTGGACGTG ATGTTTGGGCATGCGAATCTCGTTGCCCAAAAGATGTTTTCAGTCTGCATATCTGAGGAC GGAGGTTTGTTGACTGTCGGAGGCTACGAGCCGACGCTCTTGGTTGCGCCACCAATGGAT CAGTCGACTCCTGCGGTCCACGCGTGGCGGCCAGCAGCCTCGGAAGCAGAGAGCGTTTCG GCGAGGGAAATTGCAGATGAGGGGACGTCTCCTCACCACGCTTCTCTGCTGACGTGGACA AGCATCATTTCCCATTCGACCTACCGCGTGCCGCTGTCGGGCATGGAAGTCGAAGGCCTC GTTCTCGGGAACGGCGTCGACGACTTTGGAAACACCATGGTGGACTCCGGGACGACGTAT TCGTACTTCCCTCCGGCGGTGTTTGCGCGGTGGCGATCCTTTCTGAGTCGCTTTTGCACG CCAGAGTTGTTTTGCGAGAGAGAGAGAGACGGCCGTCCTTGCTGGCGAGTGTCTCCAGGG ACGGAACTGAGCTCGATCTTCCCCCCGATTAAAGTGTCTTTTGGCGACGACCAAAACTCC CAAGTCTGGTGGTGGCCCGAAGGCTACTTGTACAGACGAACGGGAGGCTACTTCTGTGAC GGCTTGGATGACAACAAAGTCGGTGCAAGCGTTCTAGGACTCTCGTTCTTCAAAAACAAG CAAGTGCTGTTTGACCGAGAGCACGACCGCGTCGGATTCGCCGCTGCAAAGTGTCCCTCC TTCTTCCTTGACCAGAGGCCCCGCGGGCCGGACTCAGACGATGGATCGAAAGGGAGACCG ACCGCGCCGTTCACTGTTGCGCCTTTCCCCGTGCTGGTGCCGATGGACCGTGGCAGTGTT CCGGGCGGCGCGAAGCAGTCGGACGGTCTGCCGTTCTCGCCCCGGCAGATCTGGGTGGCG GCGCTGTTGGTCGTAGTTGCAATCCTCGTCGCAGTCACAGTCATTCTTCTCCACACGATC AAAAGATCTTCGACGGGGACTGCAGTGGCCCCTGCTCCGTCTTCTGTTCCTTCACTCCCG TTCGCGCCGGCTTCGAAATCTGCTGGCCGCTTTGTTCGAGGCCTCGGGCAGGGCGCGCTG GGGGTCAGCAACCAGGTGTATGTACAGCGCACGCAGAGATACCGCGAAGTCGAGGAGGCG CAGCCCCACACTGCAGACGCGTACTATGACGTTGAGGAAGACCGGTTCACCGGAGTTGAT GGCGATTTCTTCGTCGACGACACAGCTCTCTCTTCAGTCGAACGGGAGGCGACGGCGGCG CTTCCACCTTTGTCTCTTCAAGGGCACGACGAATCCGCTTTCTCGGCGTCTCAGCCGACT CTCCTTGACCTTCCTCTTGGCGGAGAGGAGGATGAGCACGTGGGAGCAGCTTGTTCCCCA TAA
  • Download Fasta

  • Fasta :-

    MLFVFAVFSPPLSDRLFSGALPAQASSSSVFPSPSSLPRSLSNDAADVGREIPDTRGAAM RDETQVAKEDIFPPASGVVPAPGMKASDLQKTTPAVDLLGLPVKEKVFRARLYGSMFSYA YYFLDILVGTPPQRASVILDTGSSLLAFPCAGCSECGEHLDPAMDTSRSATGEWIDCKEE ERCFGTCSGGTPLGGLGGGGVSSMRRCMYTQTYSEGSAIRGIYFSDVVALGEVEQKNPPV RYDFVGCHTQETNLFVTQKAAGIFGISFPKGHRQPTLLDVMFGHANLVAQKMFSVCISED GGLLTVGGYEPTLLVAPPMDQSTPAVHAWRPAASEAESVSAREIADEGTSPHHASLLTWT SIISHSTYRVPLSGMEVEGLVLGNGVDDFGNTMVDSGTTYSYFPPAVFARWRSFLSRFCT PELFCERERDGRPCWRVSPGTELSSIFPPIKVSFGDDQNSQVWWWPEGYLYRRTGGYFCD GLDDNKVGASVLGLSFFKNKQVLFDREHDRVGFAAAKCPSFFLDQRPRGPDSDDGSKGRP TAPFTVAPFPVLVPMDRGSVPGGAKQSDGLPFSPRQIWVAALLVVVAILVAVTVILLHTI KRSSTGTAVAPAPSSVPSLPFAPASKSAGRFVRGLGQGALGVSNQVYVQRTQRYREVEEA QPHTADAYYDVEEDRFTGVDGDFFVDDTALSSVEREATAALPPLSLQGHDESAFSASQPT LLDLPLGGEEDEHVGAACSP

  • title: inhibitor binding site
  • coordinates: D140,G142,S144,T210,Q211,T212,I263
No Results
No Results
IDSitePeptideScoreMethod
NCLIV_017720604 SIKRSSTGTA0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India