NCLIV_019470 | conserved hypothetical protein

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NCLIV_019470SP0.1539650.8457600.000275CS pos: 33-34. ISS-SP. Pr: 0.8761
No Results

  • Fasta :-

    >NCLIV_019470 MSRHPALGSPASRHFFLCVFLFFALSHVTPISSSPFPPFSSPLAAASCQARPLAVCAAHL LNSASRPCTPVQRWSIRESGRSSSSSARSSSSSALSDTPPSLGARLVSFSRKQLHGGSLP CARAVSVRWFPQAKLLPLCTLLHLHCLTTLLSFTALGLNALLSSQHLLLLPSLPFFWRRL LDKNNQLHAFIRGVITPDLPAVQATLTGPFFEELQFRFLLQKCLLSPLLSLVSFWLSVEG KRPLTFFRERPSPFLSADNGGEAKSRGRHAQATRQSYHCSPQRQETSRNRKHSTGTGAEH NNQSVDRARVSQRLGNALRRSRFSSEGERGAHKQKEVKTDTERLCASTKQEQFQGAQEPS PPSPCRVEERLRIAISSLLFAIAHYVPPSSSELDHLESRPPTSHIATPSHFQEPSGPRIS STSPLGSPSLSARTPHRSGLLSAPVDTRSVHGPFPSHRWRIADCIAANRILTAAVQGCVW GFAMERGGLASAVLLHVLHNLQQFALLSAFRWCVFRKQREAKKGSTP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_019470.fa Sequence name : NCLIV_019470 Sequence length : 527 VALUES OF COMPUTED PARAMETERS Coef20 : 4.225 CoefTot : 1.209 ChDiff : 32 ZoneTo : 211 KR : 18 DE : 4 CleavSite : 138 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.200 2.135 0.332 0.782 MesoH : 0.495 0.798 -0.093 0.337 MuHd_075 : 48.678 28.043 11.778 11.293 MuHd_095 : 50.284 27.157 12.898 10.311 MuHd_100 : 45.481 28.444 12.217 10.107 MuHd_105 : 46.646 28.833 11.839 11.094 Hmax_075 : 9.538 17.400 1.644 4.874 Hmax_095 : 6.475 14.262 1.639 2.345 Hmax_100 : 8.100 16.300 5.039 4.150 Hmax_105 : 6.000 15.100 3.832 4.290 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0170 0.9830 DFMC : 0.0003 0.9997 This protein is probably imported in mitochondria. f(Ser) = 0.1611 f(Arg) = 0.0711 CMi = 0.95052 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 527 NCLIV_019470 MSRHPALGSPASRHFFLCVFLFFALSHVTPISSSPFPPFSSPLAAASCQARPLAVCAAHLLNSASRPCTPVQRWSIRESG 80 RSSSSSARSSSSSALSDTPPSLGARLVSFSRKQLHGGSLPCARAVSVRWFPQAKLLPLCTLLHLHCLTTLLSFTALGLNA 160 LLSSQHLLLLPSLPFFWRRLLDKNNQLHAFIRGVITPDLPAVQATLTGPFFEELQFRFLLQKCLLSPLLSLVSFWLSVEG 240 KRPLTFFRERPSPFLSADNGGEAKSRGRHAQATRQSYHCSPQRQETSRNRKHSTGTGAEHNNQSVDRARVSQRLGNALRR 320 SRFSSEGERGAHKQKEVKTDTERLCASTKQEQFQGAQEPSPPSPCRVEERLRIAISSLLFAIAHYVPPSSSELDHLESRP 400 PTSHIATPSHFQEPSGPRISSTSPLGSPSLSARTPHRSGLLSAPVDTRSVHGPFPSHRWRIADCIAANRILTAAVQGCVW 480 GFAMERGGLASAVLLHVLHNLQQFALLSAFRWCVFRKQREAKKGSTP 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NCLIV_019470 3 ----MSR|HP 0.076 . NCLIV_019470 13 LGSPASR|HF 0.104 . NCLIV_019470 51 AASCQAR|PL 0.119 . NCLIV_019470 66 LLNSASR|PC 0.124 . NCLIV_019470 73 PCTPVQR|WS 0.077 . NCLIV_019470 77 VQRWSIR|ES 0.118 . NCLIV_019470 81 SIRESGR|SS 0.216 . NCLIV_019470 88 SSSSSAR|SS 0.299 . NCLIV_019470 105 PPSLGAR|LV 0.190 . NCLIV_019470 111 RLVSFSR|KQ 0.077 . NCLIV_019470 112 LVSFSRK|QL 0.131 . NCLIV_019470 123 GSLPCAR|AV 0.131 . NCLIV_019470 128 ARAVSVR|WF 0.132 . NCLIV_019470 134 RWFPQAK|LL 0.060 . NCLIV_019470 178 SLPFFWR|RL 0.096 . NCLIV_019470 179 LPFFWRR|LL 0.183 . NCLIV_019470 183 WRRLLDK|NN 0.063 . NCLIV_019470 192 QLHAFIR|GV 0.133 . NCLIV_019470 217 FEELQFR|FL 0.096 . NCLIV_019470 222 FRFLLQK|CL 0.059 . NCLIV_019470 241 WLSVEGK|RP 0.066 . NCLIV_019470 242 LSVEGKR|PL 0.122 . NCLIV_019470 248 RPLTFFR|ER 0.074 . NCLIV_019470 250 LTFFRER|PS 0.067 . NCLIV_019470 264 DNGGEAK|SR 0.088 . NCLIV_019470 266 GGEAKSR|GR 0.109 . NCLIV_019470 268 EAKSRGR|HA 0.110 . NCLIV_019470 274 RHAQATR|QS 0.094 . NCLIV_019470 283 YHCSPQR|QE 0.072 . NCLIV_019470 288 QRQETSR|NR 0.108 . NCLIV_019470 290 QETSRNR|KH 0.093 . NCLIV_019470 291 ETSRNRK|HS 0.341 . NCLIV_019470 307 NNQSVDR|AR 0.093 . NCLIV_019470 309 QSVDRAR|VS 0.093 . NCLIV_019470 313 RARVSQR|LG 0.100 . NCLIV_019470 319 RLGNALR|RS 0.075 . NCLIV_019470 320 LGNALRR|SR 0.227 . NCLIV_019470 322 NALRRSR|FS 0.386 . NCLIV_019470 329 FSSEGER|GA 0.154 . NCLIV_019470 333 GERGAHK|QK 0.078 . NCLIV_019470 335 RGAHKQK|EV 0.089 . NCLIV_019470 338 HKQKEVK|TD 0.066 . NCLIV_019470 343 VKTDTER|LC 0.065 . NCLIV_019470 349 RLCASTK|QE 0.068 . NCLIV_019470 366 SPPSPCR|VE 0.097 . NCLIV_019470 370 PCRVEER|LR 0.085 . NCLIV_019470 372 RVEERLR|IA 0.085 . NCLIV_019470 399 LDHLESR|PP 0.084 . NCLIV_019470 418 QEPSGPR|IS 0.088 . NCLIV_019470 433 SPSLSAR|TP 0.167 . NCLIV_019470 437 SARTPHR|SG 0.108 . NCLIV_019470 448 SAPVDTR|SV 0.238 . NCLIV_019470 458 GPFPSHR|WR 0.092 . NCLIV_019470 460 FPSHRWR|IA 0.187 . NCLIV_019470 469 DCIAANR|IL 0.087 . NCLIV_019470 486 WGFAMER|GG 0.072 . NCLIV_019470 511 ALLSAFR|WC 0.064 . NCLIV_019470 516 FRWCVFR|KQ 0.101 . NCLIV_019470 517 RWCVFRK|QR 0.116 . NCLIV_019470 519 CVFRKQR|EA 0.366 . NCLIV_019470 522 RKQREAK|KG 0.180 . NCLIV_019470 523 KQREAKK|GS 0.120 . ____________________________^_________________

  • Fasta :-

    >NCLIV_019470 ATGTCCCGCCACCCTGCGCTCGGCAGCCCTGCGTCGCGTCATTTTTTCCTGTGCGTCTTT CTCTTCTTTGCCCTTTCTCATGTAACGCCTATCTCGTCTTCGCCGTTTCCGCCGTTCTCC TCTCCTCTGGCTGCCGCTTCTTGCCAGGCTCGTCCGCTCGCAGTGTGCGCCGCCCACCTG CTGAACTCGGCCTCGCGCCCGTGCACTCCGGTGCAAAGATGGTCAATCCGCGAATCTGGT CGCTCTTCGAGCTCGTCGGCCCGGTCCTCTTCTTCCTCTGCGCTATCTGACACTCCTCCG TCTTTGGGCGCTCGGCTTGTGTCTTTTTCGAGAAAACAGCTTCATGGCGGTTCTTTGCCG TGCGCCCGCGCCGTCTCAGTGCGTTGGTTTCCCCAGGCCAAGCTTCTGCCCCTCTGTACG CTTCTCCATTTGCACTGTCTCACCACGCTCTTGTCTTTCACAGCTCTCGGTCTGAACGCG TTGCTTTCCTCGCAGCATCTCTTGCTCCTCCCCTCGCTTCCGTTCTTCTGGCGGCGCCTC CTCGACAAAAACAACCAGCTGCACGCCTTTATCCGAGGTGTCATTACACCTGACCTTCCG GCTGTGCAAGCCACGCTGACCGGCCCTTTTTTCGAGGAGCTCCAGTTCCGATTTCTTTTG CAGAAATGCCTGCTCTCTCCGCTGCTTTCGCTTGTGTCCTTTTGGCTCTCAGTTGAGGGC AAGCGGCCGCTTACCTTCTTTCGCGAGCGGCCGAGTCCATTTCTTTCCGCCGACAACGGC GGAGAGGCGAAAAGCCGGGGTAGACACGCGCAGGCGACAAGACAGTCTTATCACTGCTCT CCGCAAAGACAGGAAACCAGCCGGAACCGCAAACACTCAACGGGGACAGGCGCCGAACAC AACAACCAATCCGTGGATCGGGCGCGCGTCAGTCAACGTCTCGGGAATGCTCTGAGGCGT TCGAGATTTTCCTCAGAGGGGGAACGTGGTGCCCATAAGCAGAAGGAGGTCAAGACGGAT ACGGAAAGACTGTGCGCGAGTACGAAACAGGAACAATTCCAAGGAGCGCAAGAGCCCTCT CCTCCGTCGCCTTGTCGAGTTGAAGAAAGGCTCCGCATTGCAATCAGTTCGCTCCTGTTC GCGATCGCGCACTATGTACCTCCGTCCTCTTCCGAGCTCGACCACCTTGAGTCCAGGCCT CCTACGTCGCACATTGCGACGCCTTCTCATTTCCAGGAGCCTTCCGGGCCGAGAATTTCT TCCACATCACCTTTAGGCTCGCCTTCTCTCTCCGCCCGTACTCCACATCGCTCGGGTCTC CTCTCTGCGCCAGTCGATACTCGCTCTGTGCACGGCCCTTTCCCCTCCCATCGGTGGCGA ATTGCAGATTGCATTGCGGCGAACCGCATCTTAACTGCCGCCGTCCAAGGCTGCGTTTGG GGCTTTGCGATGGAAAGAGGCGGTCTCGCGAGCGCCGTGCTTCTTCACGTTCTGCACAAC CTCCAACAGTTCGCGCTCCTCTCTGCCTTTCGTTGGTGTGTCTTCCGCAAACAAAGGGAG GCGAAAAAGGGAAGCACGCCTTGA
  • Download Fasta

  • Fasta :-

    MSRHPALGSPASRHFFLCVFLFFALSHVTPISSSPFPPFSSPLAAASCQARPLAVCAAHL LNSASRPCTPVQRWSIRESGRSSSSSARSSSSSALSDTPPSLGARLVSFSRKQLHGGSLP CARAVSVRWFPQAKLLPLCTLLHLHCLTTLLSFTALGLNALLSSQHLLLLPSLPFFWRRL LDKNNQLHAFIRGVITPDLPAVQATLTGPFFEELQFRFLLQKCLLSPLLSLVSFWLSVEG KRPLTFFRERPSPFLSADNGGEAKSRGRHAQATRQSYHCSPQRQETSRNRKHSTGTGAEH NNQSVDRARVSQRLGNALRRSRFSSEGERGAHKQKEVKTDTERLCASTKQEQFQGAQEPS PPSPCRVEERLRIAISSLLFAIAHYVPPSSSELDHLESRPPTSHIATPSHFQEPSGPRIS STSPLGSPSLSARTPHRSGLLSAPVDTRSVHGPFPSHRWRIADCIAANRILTAAVQGCVW GFAMERGGLASAVLLHVLHNLQQFALLSAFRWCVFRKQREAKKGSTP

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_01947086 SSSSSSARSS0.996unspNCLIV_01947086 SSSSSSARSS0.996unspNCLIV_01947086 SSSSSSARSS0.996unspNCLIV_01947089 SSSARSSSSS0.991unspNCLIV_01947090 SSARSSSSSA0.994unspNCLIV_019470293 SNRKHSTGTG0.997unspNCLIV_019470324 SRSRFSSEGE0.998unspNCLIV_019470325 SSRFSSEGER0.995unspNCLIV_019470403 SRPPTSHIAT0.99unspNCLIV_019470423 SISSTSPLGS0.993unspNCLIV_01947075 SVQRWSIRES0.996unspNCLIV_01947083 SSGRSSSSSA0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India