NCLIV_020050 | Zinc finger (C3HC4 RING finger) protein, related

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  • Fasta :-

    >NCLIV_020050 MRCSPLSSPEDASAPSSEPPAEDASSPSAAHSLDMASAPVSLSVSGEQKFASCPSASSPG EKVPSSDSHSSSMREVRGVSAKPLEGEGGSLPAPSPETGGGRWAEHEDEERRKEEGRENG GETEERRQGQDRETEEADPTGYEEQTRDREDSGGRNARKHEGKDEAGNQEIGKDEGEEGE EAAARESCPREPEKEAGEEGGQERGEETTSAEGSSEAAREFCWQCLHSWLRRGASECPVC KGHTTTSNVIPIYGRGAEKHPRDAPDKGETAAGRIPERPRAERPEPGPQSQSSVRFGPGD TKDKRCFGSGRDSVFVCPCTWGFAGGTGGASLSFGLFPFFGLGVTWGGGAVNTGFSTSAS SAFDWLFFPPGAHRRRPGVHRPDQVLTEEQQRMQSLGFLLLAFCFVLYIIFIA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NCLIV_020050.fa Sequence name : NCLIV_020050 Sequence length : 413 VALUES OF COMPUTED PARAMETERS Coef20 : 3.374 CoefTot : 0.087 ChDiff : -24 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.624 2.971 0.606 1.015 MesoH : 0.774 0.501 -0.025 0.387 MuHd_075 : 8.780 1.408 3.157 2.412 MuHd_095 : 24.022 3.124 4.106 2.258 MuHd_100 : 10.935 2.444 1.237 1.030 MuHd_105 : 7.680 6.963 4.193 0.730 Hmax_075 : -0.933 0.933 -0.845 2.170 Hmax_095 : 6.400 -1.900 -0.853 0.960 Hmax_100 : 6.400 2.200 -0.103 1.260 Hmax_105 : 0.000 2.200 -0.103 0.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9955 0.0045 DFMC : 0.9923 0.0077
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 413 NCLIV_020050 MRCSPLSSPEDASAPSSEPPAEDASSPSAAHSLDMASAPVSLSVSGEQKFASCPSASSPGEKVPSSDSHSSSMREVRGVS 80 AKPLEGEGGSLPAPSPETGGGRWAEHEDEERRKEEGRENGGETEERRQGQDRETEEADPTGYEEQTRDREDSGGRNARKH 160 EGKDEAGNQEIGKDEGEEGEEAAARESCPREPEKEAGEEGGQERGEETTSAEGSSEAAREFCWQCLHSWLRRGASECPVC 240 KGHTTTSNVIPIYGRGAEKHPRDAPDKGETAAGRIPERPRAERPEPGPQSQSSVRFGPGDTKDKRCFGSGRDSVFVCPCT 320 WGFAGGTGGASLSFGLFPFFGLGVTWGGGAVNTGFSTSASSAFDWLFFPPGAHRRRPGVHRPDQVLTEEQQRMQSLGFLL 400 LAFCFVLYIIFIA 480 ............................................................................P... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NCLIV_020050 2 -----MR|CS 0.078 . NCLIV_020050 49 SVSGEQK|FA 0.081 . NCLIV_020050 62 ASSPGEK|VP 0.067 . NCLIV_020050 74 SHSSSMR|EV 0.179 . NCLIV_020050 77 SSMREVR|GV 0.655 *ProP* NCLIV_020050 82 VRGVSAK|PL 0.113 . NCLIV_020050 102 PETGGGR|WA 0.100 . NCLIV_020050 111 EHEDEER|RK 0.082 . NCLIV_020050 112 HEDEERR|KE 0.121 . NCLIV_020050 113 EDEERRK|EE 0.096 . NCLIV_020050 117 RRKEEGR|EN 0.140 . NCLIV_020050 126 GGETEER|RQ 0.106 . NCLIV_020050 127 GETEERR|QG 0.127 . NCLIV_020050 132 RRQGQDR|ET 0.176 . NCLIV_020050 147 GYEEQTR|DR 0.126 . NCLIV_020050 149 EEQTRDR|ED 0.105 . NCLIV_020050 155 REDSGGR|NA 0.093 . NCLIV_020050 158 SGGRNAR|KH 0.356 . NCLIV_020050 159 GGRNARK|HE 0.117 . NCLIV_020050 163 ARKHEGK|DE 0.090 . NCLIV_020050 173 GNQEIGK|DE 0.090 . NCLIV_020050 185 GEEAAAR|ES 0.114 . NCLIV_020050 190 ARESCPR|EP 0.101 . NCLIV_020050 194 CPREPEK|EA 0.110 . NCLIV_020050 204 EEGGQER|GE 0.088 . NCLIV_020050 219 GSSEAAR|EF 0.140 . NCLIV_020050 231 CLHSWLR|RG 0.070 . NCLIV_020050 232 LHSWLRR|GA 0.278 . NCLIV_020050 241 SECPVCK|GH 0.064 . NCLIV_020050 255 VIPIYGR|GA 0.115 . NCLIV_020050 259 YGRGAEK|HP 0.064 . NCLIV_020050 262 GAEKHPR|DA 0.200 . NCLIV_020050 267 PRDAPDK|GE 0.074 . NCLIV_020050 274 GETAAGR|IP 0.078 . NCLIV_020050 278 AGRIPER|PR 0.074 . NCLIV_020050 280 RIPERPR|AE 0.086 . NCLIV_020050 283 ERPRAER|PE 0.188 . NCLIV_020050 295 QSQSSVR|FG 0.090 . NCLIV_020050 302 FGPGDTK|DK 0.060 . NCLIV_020050 304 PGDTKDK|RC 0.063 . NCLIV_020050 305 GDTKDKR|CF 0.278 . NCLIV_020050 311 RCFGSGR|DS 0.103 . NCLIV_020050 374 FPPGAHR|RR 0.065 . NCLIV_020050 375 PPGAHRR|RP 0.179 . NCLIV_020050 376 PGAHRRR|PG 0.124 . NCLIV_020050 381 RRPGVHR|PD 0.093 . NCLIV_020050 392 LTEEQQR|MQ 0.088 . ____________________________^_________________

  • Fasta :-

    >NCLIV_020050 ATGCGCTGTTCTCCCCTTTCCTCTCCTGAAGACGCTTCTGCGCCTTCCAGCGAACCACCT GCAGAGGACGCGAGCTCGCCTTCCGCGGCGCACTCTCTCGACATGGCGTCTGCGCCCGTG TCGCTCTCCGTGTCGGGAGAGCAAAAGTTTGCTTCTTGTCCCTCTGCCTCTTCTCCAGGT GAGAAGGTGCCTTCTTCTGATTCACACTCGTCTTCGATGAGAGAGGTTCGCGGCGTGTCT GCCAAGCCCTTAGAAGGCGAGGGGGGTTCTCTGCCGGCTCCGTCGCCGGAAACTGGGGGA GGGCGGTGGGCAGAGCATGAGGACGAAGAGCGGAGGAAAGAAGAGGGGCGCGAGAACGGA GGAGAAACAGAAGAGCGGAGGCAGGGACAAGACAGAGAGACAGAGGAAGCAGACCCGACA GGATACGAGGAACAGACGAGGGACAGAGAAGACAGCGGTGGACGCAACGCACGGAAGCAT GAAGGAAAGGATGAAGCAGGGAACCAAGAGATAGGAAAAGATGAAGGGGAAGAGGGTGAA GAAGCGGCTGCGAGGGAATCCTGTCCCCGAGAGCCGGAGAAGGAAGCAGGGGAAGAGGGA GGACAAGAGAGGGGAGAGGAGACAACCTCTGCTGAAGGTTCGTCCGAGGCAGCAAGAGAA TTCTGCTGGCAGTGTCTGCACTCCTGGCTCCGACGAGGAGCCAGCGAGTGTCCTGTGTGC AAGGGCCACACGACGACTAGCAACGTCATCCCCATTTACGGCCGGGGCGCTGAAAAGCAT CCCCGCGATGCGCCGGATAAAGGCGAGACTGCCGCAGGCAGGATCCCCGAGAGGCCGCGG GCGGAACGGCCGGAGCCTGGGCCGCAAAGCCAGTCGAGTGTCAGGTTCGGGCCCGGCGAC ACCAAAGACAAGCGTTGTTTCGGCAGCGGGCGGGATTCGGTTTTCGTGTGTCCGTGCACC TGGGGTTTCGCGGGCGGAACTGGCGGTGCGAGTTTGTCGTTTGGTTTGTTTCCTTTCTTC GGCCTCGGAGTGACGTGGGGAGGCGGAGCCGTCAACACAGGCTTCTCCACCTCCGCGTCC TCAGCCTTCGACTGGCTGTTCTTTCCGCCTGGCGCACATCGGCGGCGTCCGGGGGTTCAT CGTCCAGACCAAGTTCTCACAGAGGAACAGCAGCGCATGCAGTCTCTCGGCTTCCTCCTC CTGGCCTTTTGTTTCGTGTTGTATATCATTTTTATTGCCTAG
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NCLIV_02005058 SPSASSPGEK0.992unspNCLIV_02005058 SPSASSPGEK0.992unspNCLIV_02005058 SPSASSPGEK0.992unspNCLIV_02005072 SSHSSSMREV0.996unspNCLIV_02005080 SVRGVSAKPL0.995unspNCLIV_02005095 SLPAPSPETG0.991unspNCLIV_020050152 SDREDSGGRN0.996unspNCLIV_020050214 SSAEGSSEAA0.991unspNCLIV_020050293 SQSQSSVRFG0.994unspNCLIV_020050309 SRCFGSGRDS0.991unspNCLIV_020050361 STSASSAFDW0.992unspNCLIV_0200508 SSPLSSPEDA0.997unspNCLIV_02005026 SEDASSPSAA0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India